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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0457200 |
| Transcript ID | LotjaGi4g1v0457200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase family; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1; TrEMBL-Plants: tr|V7CQN0|V7CQN0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0457200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82863318..82867358) extracted from Lotus japonicus Gifu genome v1.2.
CTACAACTGATCAATGTGAGATTAATCAATCAATCACTCACAACGCACTAAGCTATAGAACTTAGAAGGATGACCGGTGA GTCAATTCTATTCGCAAAAGTTAAAGAATCGAACCTCTAATCACTTATTTAAGGGACGTAGTGTTAAACCATTCTACCAG TGTTATTCCTCTGTGTGGGTCACCTCCATAAATTTGTGCACTTGAATTTAATCTTTTCAACGACCAATTCACGTTTCAAC TGTTGAACGTGATCATCTTCTTTGCTCTCGTGTTTCAACTATGTCTTCACAACCCTTCGCTTTCTCATTCTAAATCATTA CTAATATGGCATCGCCTTACTCCGCCCCTCAGCCCCACGCGCCACTCCTCCGCCCCCGCCGCGATGGCTCCCGACCTCCC ATCCTCGCGCTCCTCCTCGGCCGCCGCGGCCCTTCCGTGCTGGTCCGCGAGACAGCAGCGCGTGAGCTGGAGGAGCGGCG TGCCGACTGGGGCTACTCGAAGCCGGTGGTGGCCCTTGACATGGCGTGGAACATGGCCTTTGTGGTGGTCTCCGTGGTGA TGCTCGGTTTCACCCTCCAGGAGAATCCTAACACGCCGATCCGGTTGTGGATCTGCGGTTACGCGGTTCAGTGCCTGGTT CACCTCGTGCTGGTGTGGCTCGAGTACAGGAGGAGGAACCGGAGGGGACACGGCATGGAATCTGGTAACAACCTTGACGA TGACGTTGACGACAGTGAGGATGATGATGTTGGGGTTGGAAGCTCTGGGAATTCCTCTAGCTATGGGTGCGTCCGTTGAA TTTTGTTTCTCTCAGCTGAATTTTGATAATTGACTATTCAATTTTGATATTATTCCACTGTCTTCTTTCACCGAGGTAGG TAACATAAGTTGATCAGAACAACAATTACAGTGAACTTTCGTCTTTCTGCTAACATGTTTTGGATAGTGAAGCTAGACAT GCTTTGGATAGTGAAACTAGACATGCTTTAAGTCCTGCTTTTAAGCTTCAATTCTCTAAGTTTAAGGCTTTGATAATGTG GTTTTTGGTTGGTTTACTTTGAGCAATTATCCTAGGGGTGAATGCATTGAGTTGTTATTAGCTATTAAGTGTCATTTTTC TTATACTGAATGGTATATGTGTTTCATTAAGATTTTAGTGGACAGGATCCTCTACTGATTTTTGTCCCTAAAGGTTTACT TCTTTTTGTATTGTGAGGACTAAGTACATGTTTGGATTATCGTTGTCGGAATTGATTTTGATATAATTTATTATGGTAAA AGTGAGTTGGACCACTTGTTTTGATCCACGTTTGAATCACTATATATGCGGGTTGATCTTGAAGCTACACGACACACGTT GGAGATAAAAATGAGACGTGCCTAGGAGAGTTTGTGCATAGCTCATTATGAAACATACACGAAGTGTCTTGAAAGTGGAA TTATTTATGTTTGAATACATTTATGAAAATAATGATATCCGTAGGATAATGTTGTGAAATCAAGTTGTAAAAGTTCACGA TTGACGCCGTGTAAGCTATTCTCTTTAGCTTCTCCAGAGATTTGATTTTGGAACGAAAATCAGTTCCGAGATTATTCCCA AACATCCATGTATGTTTGGAAATCCTTCAACAATTGATTCTAAAGCTAGAATCAAATATGCGGAAAGTTTAATTTAGTAG CTTCTAGATTTCATAATTTACTATGAGGAAATAGAAAATGATCCATTCATGCATCCAAAAGAGATTTTGTCCAATGAGAA TTAATTCTAAGATTCCCCAGTGAGGTACCTAACACACTCTGATTGGTGGACTATCCTTTCACCGTGGGTAAAGGAAACTA CATGTTTGTTACTGTCTAAGTGCTAAAGCTTGTTAATCTACTATATGAGTTGTGTATAGTTCGGCTTATTGTTATATAAT TCTCTGGATTGTATTAGGTAATTAAGTTTTGTATATACTGAATTTGATTACCTGCAACTCAGATTCGTAAAACGATGTGC ATCATTCAATACCATGGTTTCATTGCTTTGGTGGATGGTGGGCTTTTACTGGGTAGTCTGTGGTGGTGATGTTCTTCTGC AAGATGCTCCACGTTTGTACTGGTAAGCCTTTATTGATAATGTCTGCATATTAACTTAGGGAAAAGTACCTTAAACTTTG AGTTTTCTGCAATTTGTTGCAATGAACATTGGAATGTTATGAGGTCCCCAATTGCTCTTCCAACCTTCCATTGGTATCAA ATTTGCACTGTCTATTATGAAAACCACTCATCTCAATGCTTATTGTATCATGCTATATCTCAAGGAGTTATGGCCCATTT TCTTCTAATAAAAATGTCATAATCCATTCTACTATAGGGGAAATCAATTATATAGCTCTGATGTTTTGTCAAAGTAGACA TGGGAGTTTAAATGTTAAATAAGAACCGATGGAAATGCTAAATAGTCAATTCTATAAAATAAATATTTCATTACCAAGTA CCAAGGATATTTTTTTTAATACTTCAACTTATTAGATTGTAGTATATTTATATTACTGAAAATGGATTGATTGAGTGGTG AAAATCTTAAGAAAGGTTATCACTTTTGTTTTTGATTTTGTACAGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCT TTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGCTGTTGTTTGCCATGTATTATTGGTATTCTC TATGCTGTTGCTGGACAGGTATGAATTTATTTTATTCTGACTGAAAATTTTCTAATATTTGTGGACCTTCCAATTGTTCT CATTACCTATTTGGTGAGACTGTAGGAGGGTGCATCTGAATCAGATATCGGCGTACTTCCAAAATACAGATTTCAAATGT CAAGCAATGGGGAAACACCTAGTGAAGGAGGTGGATCAATGGTTCCCCTAGAAACCGGCATCGGTTTCCCGGCAAATGAA CGAGCACTTTCACCCGAGGATGCGGTATGTTCTACAAAAACACATTTAATTTGTTTATGCCTTATGTGGTTATTCCCTTT TGCTCGATGGTACTTCAATATTTTCTATTTTTTGATCACTGCATATGACAATTTGTATAGTAGCTTCATATGTACTTCTG TGTGAGAATTTCTGGTTGTGCAGAATGGGAAAAATTCTAACTTCTACTTAGGGATACTAAATCTTGAAAGATTTGTTAAA AATAAATCAAATTTCTTTTTTTCCTGTTTTCTTTTCAGGAGTGCTGTATATGCATCTCTTCTTATGAGGATGGAGCAGAA CTTCATTCTCTTCCATGTAACCATCATTTCCATTCTACATGCATAGTGAAGTGGTTAAAGATGAATGCAACTTGTCCTCT TTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTTTAATGGAACAGTAAAGAAGATCCAAGATATTATATCATATCAA GCCTACTTTAATTATGTGACAGAGCAGGCGTTTCAACTGCTGATGTGTATTTGTAGATAATATCAACTCATATAACAATA GAGCTTTCCCAATCTGCTCGGTGCAGCTGTTATTGTTGGCTTAAGTGCTCGTGTGGAGTAAAGCATGTTTGGATCATTTT CTCTTTTATCAGAATTAATTATGGAACCCAGAACTACTCACACAAGCCTTTTCCGGTAATTAATTCTGGCTCCAGAATCG ATTATAGTAGGGGTTCCAAACATGCACAGAAGGCCGAGGGAAGAAGGAAAGCTTGTTATAGAGATCTAGTATTTATTTTG ATTTTGAGTGAGTTTTCCTCTCACTCTTATTTTGTCCTTTATTGGTCATTTGAAAGCTGTCCAACTTCTATGTCTCGAAT TTGTTCATATGGGAGAAAACAATGGAAAATCTGGCACTCCAACTATCTGCTTATTTCATGTTGTATTTTATGGATTCTTC ATCGGTTTTGGTAGAAACACAGATTTGCGCTTTATGTTTGCTTGTTGATGGAAGTTCTATAATGTTGCTTCTCAAACCTT GAATTTTGGAGAACTCTCCGGTCACAAACGATTGATCAATT
CDS sequence (LotjaGi4g1v0457200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGCCTTACTCCGCCCCTCAGCCCCACGCGCCACTCCTCCGCCCCCGCCGCGATGGCTCCCGACCTCCCATCCT CGCGCTCCTCCTCGGCCGCCGCGGCCCTTCCGTGCTGGTCCGCGAGACAGCAGCGCGTGAGCTGGAGGAGCGGCGTGCCG ACTGGGGCTACTCGAAGCCGGTGGTGGCCCTTGACATGGCGTGGAACATGGCCTTTGTGGTGGTCTCCGTGGTGATGCTC GGTTTCACCCTCCAGGAGAATCCTAACACGCCGATCCGGTTGTGGATCTGCGGTTACGCGGTTCAGTGCCTGGTTCACCT CGTGCTGGTGTGGCTCGAGTACAGGAGGAGGAACCGGAGGGGACACGGCATGGAATCTGGTAACAACCTTGACGATGACG TTGACGACAGTGAGGATGATGATGTTGGGGTTGGAAGCTCTGGGAATTCCTCTAGCTATGGATTCGTAAAACGATGTGCA TCATTCAATACCATGGTTTCATTGCTTTGGTGGATGGTGGGCTTTTACTGGGTAGTCTGTGGTGGTGATGTTCTTCTGCA AGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGG CATGCTTGATTGGCATTGCCCTCTGCTGTTGTTTGCCATGTATTATTGGTATTCTCTATGCTGTTGCTGGACAGGAGGGT GCATCTGAATCAGATATCGGCGTACTTCCAAAATACAGATTTCAAATGTCAAGCAATGGGGAAACACCTAGTGAAGGAGG TGGATCAATGGTTCCCCTAGAAACCGGCATCGGTTTCCCGGCAAATGAACGAGCACTTTCACCCGAGGATGCGGAGTGCT GTATATGCATCTCTTCTTATGAGGATGGAGCAGAACTTCATTCTCTTCCATGTAACCATCATTTCCATTCTACATGCATA GTGAAGTGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTTTAA
Protein sequence (LotjaGi4g1v0457200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPYSAPQPHAPLLRPRRDGSRPPILALLLGRRGPSVLVRETAARELEERRADWGYSKPVVALDMAWNMAFVVVSVVML GFTLQENPNTPIRLWICGYAVQCLVHLVLVWLEYRRRNRRGHGMESGNNLDDDVDDSEDDDVGVGSSGNSSSYGFVKRCA SFNTMVSLLWWMVGFYWVVCGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIGILYAVAGQEG ASESDIGVLPKYRFQMSSNGETPSEGGGSMVPLETGIGFPANERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCI VKWLKMNATCPLCKYNILKGNEQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 344 | 344 | 3.2E-207 | – | |
| Phobius | 1 | 60 | 60 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 344 | 344 | 3.2E-207 | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 61 | 80 | 20 | - | – | |
| Phobius | 81 | 91 | 11 | - | – | |
| Phobius | 92 | 112 | 21 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 113 | 159 | 47 | - | – | |
| MobiDBLite | 125 | 148 | 24 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 160 | 179 | 20 | - | – | |
| Phobius | 180 | 190 | 11 | - | – | |
| Phobius | 191 | 209 | 19 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 210 | 215 | 6 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 216 | 236 | 21 | - | – | |
| Phobius | 237 | 344 | 108 | - | – | |
| Gene3D | 277 | 342 | 66 | 4.1E-19 | ||
| SUPERFAMILY | 284 | 338 | 55 | 2.2E-19 | – | |
| Pfam | 292 | 334 | 43 | 2.0E-12 | ||
| SMART | 293 | 333 | 41 | 1.2E-5 | ||
| ProSiteProfiles | 293 | 334 | 42 | 12.548 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0457200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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