Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0000100 |
| Transcript ID | LotjaGi5g1v0000100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G16830.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830; TrEMBL-Plants: tr|V7BY36|V7BY36_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0000100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9998..15843) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGTGAGTGGAGATTAACCAGTACTTGTCTGAAACATTTGGTTCGCTGAAGAAAAACAATTTGGACGGTGGCCGCCG CCATCTCCTCCTCCTCCATCCAGCGTCATCAAATGATATGGAGTCGGTTTGGATTAGGAAGGCAAATGAAGAAGATGATG ATGGTTAGATTGAGATTGAGAGCACAACAAACACACAAGACAGTGACTGCTCCTGTTTCATATTCATATTCATATTCATA TTCATATTCATATTCAAGTGAAACGAAAAGGGAGAATGTGCGTTCTTCTGATTTGATTGCTCTCTCTTGCTTCTTCTGGT CTTCCCAACGCCGCCGCGATCACCAGTCCGTCACCGTCGACCACATGGTCCCTGTGCTTGGTCGCCTCACTCGCCGCCAC AAAACCCTCCAAGCCATTCTCCTTCAATTGGAATCCATAGGCTGTATCCTCACCAAAAATCCTAATTCGTTCTTGCTCTT GTTGAGGATTTTATGGCGAGCAGGTATGCATGCCATGTTCTTCCAAGCTTATCACCAAATGCAATCTTACGGTTTTGTTC CCAATACATTTGCTCGTAATTTGTTTATGGATGCTCATTTTAGGATTGGCAATCTCCATCTTGCTTTAACTGTTTTTCAA CAAATTCAACCCCCTAATTTCTTCACCTTTGACATTACCCTTTTTCATCTTTCCAACTTAACTACTGATCTCACTCTAAT CACTCCTATTCTCAAACGTATGTTGAGGATGCATTACTATCCCAATGCTAACACCTTTCACTCCCTTCTCAATGCTTTCT TTAAGATGGATGCATTGCTCGAGGCTTATCAGCTCTTGGGTCTCATGGTTGTTTTAGGGATCCAATTCTCCGTCAATGTT TGGACTATTCTCATCCATAAGCACTGTCAATTGGGTATACTTGATGTTGCCAACAAACTGTTGCAAAACATGCTTCATAC AGGTTGTTCTCCTAATGTTGTAACCTATACCACCTTGATTAAGGCATATATGGAATCCAACAGGGTAACTGATGCCTCTA ATTTGTTCAATCACATGCGTTCTGCCGGCCATACTCCGGATTTAGTTCTTTGGAATGTGTTAATTGATTGCCATTCAAAG GCTGGAAGGCACCAGGATGCACTTGGAGTTTTTCGCAGCTTGTCAAAACAAAACATACAACCTGATCCTTATACCCTTAC TTCATGGTTGTCTATGATCTGTCAGTCTAGAATGTTTGATCTCTTACCCAAACCAGCTCTAGTCTTCAGATATATAGATC CTGATTTAGTTTTCTGTAATGCTCTGCTAAGCTATTTAGTTAAGGCTGGGCATCCTTCTGACGCTGCTGAGTTCTATGAT CTTATGATTGAATTAGGTTTTGCGCCAGATAAGTATAGTTTTGCTGTATTACTAAGTGCACTTTGTGCTGCGGGGAAAAT TTATGAAGCAGTTAAAGTGTACCGTGGTGGTGTTATGAGTTCTCAAGAAACTGATGCACGCATCCATACTGTAATAATAG TTGAGCTTATAAAGGCTGGTAAGTATCTCATGGCTGCTACTGTTTTTAAGCAAGCAGTGGTGAGAAAATATCCACTTGAC AATGTAGCATATGCAGTTGGCATATGTGCACTTCTTAGAAGTGGAAGAACCCCGGATGCTTGCACATTTTACGACCAAAT GAAGGAGAATGGTCTGAAACCTAATGCTCATACATGTAATATGATGCTTTTCACTTTTTATAAAGAAAAAGACCTTCAAA AGGTTAATCAGATGCTAAAAGAGATGATTGGTTCAAGGATAGAGTTGAGTGACAGAAATTTCTTAAACTTATGTAACTTT CCATGTAGATCAGATGCTTATTATTCTACATCAAACTTGTTGGCTGAGATGAGAGAGATGGGTTTATTACCTGCCAAGGC TTTGCACGCCTTAAGCTCTGACAAGTATGCTGAAAGCTTAGAAGAAAAATATGAACATTGTGCAGAAGTTAATACAGAAC TGAACCTAGTTCTAGATTCATCCAGTTCTGAAGATCTGTCAGATGTTGCTGCTTCAGTTGGCTGAGTTATCATGCTTACC ATGTGGCGGACCTGTCTAGCTGGAAGTTGGAGTTACATCATTAATCACTCATCTCTGTAAGTTCCATTTTATTTAATAAC ATTTGAAAATTAATGGACTTGTTGAAAATTATAAATTATAATACATGTGATCAGATGAATTATCACATTTCAAAACAGTG AATGCTTTCTTCGAGGAAGCAGAAGCTACACTTAAGATCTTGATCTTCTAAGGTAAAAGGCGAGCTAGTGCTGAAAAAAC ACTATGGAGAAGAGGGCGGAGATGATATTGATTATGATCGGAGGCTGCTAAGCTCTTCTGATGAATACACTTTTGGAAAG GTATGTATCATATTTACAATTTGACCTTTTTGTCCAATCATTTTCTGTCTTCTTTTGGTTACATTTTTGTCTTCTACTTA TCATGAACCAACTATCCCAAAATCTTAGTGATTGGTGAAGACACGTGAATGGTTTTATAGTGCACTCATGAATGGTTTTA TAGTATACCCTAACCTGTCCCGTCACGCAAGAGCCAAGTAGGCTCCACGTCCTGTTTGAAAATATTACTTTCATTGATCT TTGGTATTATGCTTGCAGTGTTTCTTTATGCTGCCCTTACTGATGTGCTTTTCTTCAACCCTTTACTTCTATGATGATTT TTATTTCATAATCTCAGATTCCAAATATGTCAGCCACAATACCTTCACAGTCACTACTTCCACGGATGCAGGTTTGTCTT TGATGTTCTCTGCCTAAGTTGTATTCTCAAAAGGCCTGGTTGGTTTTATTGAACTATAAATTTTGATGGATTTGAGTGTA ACATGAAGAGATGTATGAGGAACTTATGGTGAAGACCTTTGATATACTGGGGATGTTTACTAACTCCATAGTTTAGTCCT TTTAGAGTTTAGTCACTATTTTGCTTGACTTAATTCCATTCATGCACTTTCTCCATGCTAGCCAAACACATTTTGTTTCA AAAGTTTGCATTTGAAAAAAAAATATTGGAATCTTGCAACCACCCCAAACACGCCCTTAATTTTAGGAGGTGTTTTGATT TGCAATTTATGAATTGATATTTTGATTTTGGCAAATTTTTAGTTGTCTTTTATTTTGTGATATTTTATGACAAAGAACTA TCATTATGACATACTTTCATTTTGCATAAAATTTGGCTGGTCTTCCCTGACGCACTTCAAGTTGGTCATTCTTTTTTTAT CTCATCTTGCTTTTTGGTTAACCCTTGATCACATGAGGATAACAACAGACTGAAACTTGCTCTACTTTTTTTATTTCCTC AGTTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATGCTTCTCAAATGTTGAATGATCAAAGTATGAACTTTGTTCCT CAATGCCTTTTTTTTTGTCGAACTCAGTGCCTGAAATCTTATTTTATCATTAGTTAGTTGTGGATCCTGTTGTGTTTAGT CAACCCTCATTAAAAGGGTTATGATGCAATATGAAGTGTCATTAATTCTATGAGATTAACTTTCATGCAGTTAGTGTCGA ATTCTTTTATACTGACATTCAATCGTTTCATATCACATCAGCTTAAATGCTTTTAAGAGGTTACATGACTTCTTATTTTG ATTAAATTTATTTTTTAACTTGGAAACAACTATTGGATGCCAGTGTAAAGAAGTTTTACGCTGATAGTACATGCACATTA AATCCATTCTATATTCTACACGTGTGTGTGTCTAATAGATGGGTTTTACATTGCAGTGTTTAACATGGGAGGTGGCAATC CCAGTGGTATGATGCCCATACAGCAGCAGCAGCAGCAGCAACATGGTTCACAAGGTGCATTTGGTGGCATGGCATCAAAA GCTCAGAATCTACAATCTGGTATGGTGACACTTCAGAACACACAACAGAATCATCACAATTTCTCTCAACAAAGGCAGCA AAATCAACAGTGATTATGAGTGGGCATGGTGGGTTCAGTTTAGAATGAACTGAATCATGTGTTGCCCTTATGATGTGCTT TACAAATACTGAACCAAACAGTTTAAATATAGAGTAGTAAAGAAGAACTGAATTGAAAAGGGAGAAGTTATTCTGGTTTG CTTCTGTTAGCTGGTTATTTTTAAGAAAAAAAAAAAAATAGATATGATTTGACCACAGGTTATTGGGTTTCATCTGATTT AATATGAATCGAATAACTGAAAAGAAAAAAAACATGGGATGAATTTCATCAAATAAGCAGTAAGTAATCTTGCTTTCAAG CTCTAGCTCTCCACCTCCTTTTATTGCATCTGATCCTACCAGTTTCAGCTCAGAAATTTTTTGTTTATATGGCTGACCAA GGATAACAAACGTTTTTTTTTTAATTGGTAGAACGGAGATAAAACACCTTTAGACAACCAGACAGGGTAGCAAACAATGT GGAAGAGCTTTATGAGTGTTTAATGTCACTATTTTAAACTGATCTTAGCACAGAATTTCTTTAGATGGATTGAGATATAA GTCTGTTATTGTTGCACACGATTAGCGCACGACTAATATTCAAGCACGTTATACTCTTCGGTTAATTGCTGTAAATTGAT TTAATAGTGTATCTGTAGCTATTAACCAATCAATTTCAAATTTAGAAAACTGGATTAACTTTAGGGTCCATTTGTTCTAG TTTGATTAAATTAGGTTTAGTATAAATAAGTTCAGTAGAATCAAGTCTAAGAGTATGAATGTGTAAAAGTAAGTATAAAA AAATGAATGTGGTTTAACAAGAATAAAATTAAATTACTTTAGGTATTAAGTACAGGTGGATTGTTTGGATTACGAATCTC GCTTCATTTCACCCCATACTATGAGAATATTCAAACATGGGCTAATTCACCCTAACATTGAAGACTTGAGAGGAGAGGGA TATGATAACTGATTGACTGGACCTGAATTCCGTTTAAGTTTTTCCAAACAGAGAGAATAGAAAAATGAGAAGAAGTTTTA ATGTGTCAGTAGACAATTAGTTGTTATTTCAGCAGAAACGTTGGAGCCGACTTGAATGCCTAAATAATAATCCTTGGGAG CTAACTCTATTGCCACTAATTTGAATCCTGGAGCTGTTCTGTGGTGTTAGGGAGTTTCAAGGAAATTTCTCACAGCAACT GCAACATCTTCGTATAAACCATTCCAACCTGTATTAATTCAGGGGAGAAAAAGAAAAGGTGGTTAGTGTTTGGACTGGTT GGTGCTTGGAATGAAATGAACTAAACCTACCAGTCAAGAAACTTCCAACAAATATCATTTGTTGTGGTAGTGGGATAACA AGTAGTGTCTAGGACACAAGGAAGCAGATTATTCTTAAATTGTCGAATGATTCATGTTCTCAAACTGAGGGAACATGAAA ATGTAACATACCAACCAGTAATTTGTGTGTTGTTGACTTGTATCTATTTCCCATGTCTTCATCAAAAGTATGATTCGGTG TAAGTGTGTGAAAGACAAGAGGGCTTACAAGTCCTTGAGGCATGTACTGTTGTTGGATTCCGTTTCTTGAGGATGCTGGC AATCCAATGAAAATACTGCTGGCACGTTAGGACTACCGAGCGTCTTGTCCAGAAGAGGAAGATTCTCAGGAGATGAGTGT GTGGAGAAGGGTGGTGAAGGAGTTGACGATGCTGAGAAGGAGTATCTCCGGTTGCCTGGTCCAAAACTAATGGGAAGTGG AGAGGGAGGTGTAGGAGGTGATGATGTTGGAGATTCCCACACCGAATTCATATTAGTTTTCATGAACTCTCTCACTCACT CACTTT
CDS sequence (LotjaGi5g1v0000100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATGGAGTCGGTTTGGATTAGGAAGGCAAATGAAGAAGATGATGATGGTTAGATTGAGATTGAGAGCACAACAAAC ACACAAGACAGTGACTGCTCCTGTTTCATATTCATATTCATATTCATATTCATATTCATATTCAAGTGAAACGAAAAGGG AGAATGTGCGTTCTTCTGATTTGATTGCTCTCTCTTGCTTCTTCTGGTCTTCCCAACGCCGCCGCGATCACCAGTCCGTC ACCGTCGACCACATGGTCCCTGTGCTTGGTCGCCTCACTCGCCGCCACAAAACCCTCCAAGCCATTCTCCTTCAATTGGA ATCCATAGGCTGTATCCTCACCAAAAATCCTAATTCGTTCTTGCTCTTGTTGAGGATTTTATGGCGAGCAGGTATGCATG CCATGTTCTTCCAAGCTTATCACCAAATGCAATCTTACGGTTTTGTTCCCAATACATTTGCTCGTAATTTGTTTATGGAT GCTCATTTTAGGATTGGCAATCTCCATCTTGCTTTAACTGTTTTTCAACAAATTCAACCCCCTAATTTCTTCACCTTTGA CATTACCCTTTTTCATCTTTCCAACTTAACTACTGATCTCACTCTAATCACTCCTATTCTCAAACGTATGTTGAGGATGC ATTACTATCCCAATGCTAACACCTTTCACTCCCTTCTCAATGCTTTCTTTAAGATGGATGCATTGCTCGAGGCTTATCAG CTCTTGGGTCTCATGGTTGTTTTAGGGATCCAATTCTCCGTCAATGTTTGGACTATTCTCATCCATAAGCACTGTCAATT GGGTATACTTGATGTTGCCAACAAACTGTTGCAAAACATGCTTCATACAGGTTGTTCTCCTAATGTTGTAACCTATACCA CCTTGATTAAGGCATATATGGAATCCAACAGGGTAACTGATGCCTCTAATTTGTTCAATCACATGCGTTCTGCCGGCCAT ACTCCGGATTTAGTTCTTTGGAATGTGTTAATTGATTGCCATTCAAAGGCTGGAAGGCACCAGGATGCACTTGGAGTTTT TCGCAGCTTGTCAAAACAAAACATACAACCTGATCCTTATACCCTTACTTCATGGTTGTCTATGATCTGTCAGTCTAGAA TGTTTGATCTCTTACCCAAACCAGCTCTAGTCTTCAGATATATAGATCCTGATTTAGTTTTCTGTAATGCTCTGCTAAGC TATTTAGTTAAGGCTGGGCATCCTTCTGACGCTGCTGAGTTCTATGATCTTATGATTGAATTAGGTTTTGCGCCAGATAA GTATAGTTTTGCTGTATTACTAAGTGCACTTTGTGCTGCGGGGAAAATTTATGAAGCAGTTAAAGTGTACCGTGGTGGTG TTATGAGTTCTCAAGAAACTGATGCACGCATCCATACTGTAATAATAGTTGAGCTTATAAAGGCTGGTAAGTATCTCATG GCTGCTACTGTTTTTAAGCAAGCAGTGGTGAGAAAATATCCACTTGACAATGTAGCATATGCAGTTGGCATATGTGCACT TCTTAGAAGTGGAAGAACCCCGGATGCTTGCACATTTTACGACCAAATGAAGGAGAATGGTCTGAAACCTAATGCTCATA CATGTAATATGATGCTTTTCACTTTTTATAAAGAAAAAGACCTTCAAAAGGTTAATCAGATGCTAAAAGAGATGATTGGT TCAAGGATAGAGTTGAGTGACAGAAATTTCTTAAACTTATGTAACTTTCCATGTAGATCAGATGCTTATTATTCTACATC AAACTTGTTGGCTGAGATGAGAGAGATGGGTTTATTACCTGCCAAGGCTTTGCACGCCTTAAGCTCTGACAAGTATGCTG AAAGCTTAGAAGAAAAATATGAACATTGTGCAGAAGTTAATACAGAACTGAACCTAGTTCTAGATTCATCCAGTTCTGAA GATCTGTCAGATGTTGCTGCTTCAGTTGGCTGA
Protein sequence (LotjaGi5g1v0000100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIWSRFGLGRQMKKMMMVRLRLRAQQTHKTVTAPVSYSYSYSYSYSYSSETKRENVRSSDLIALSCFFWSSQRRRDHQSV TVDHMVPVLGRLTRRHKTLQAILLQLESIGCILTKNPNSFLLLLRILWRAGMHAMFFQAYHQMQSYGFVPNTFARNLFMD AHFRIGNLHLALTVFQQIQPPNFFTFDITLFHLSNLTTDLTLITPILKRMLRMHYYPNANTFHSLLNAFFKMDALLEAYQ LLGLMVVLGIQFSVNVWTILIHKHCQLGILDVANKLLQNMLHTGCSPNVVTYTTLIKAYMESNRVTDASNLFNHMRSAGH TPDLVLWNVLIDCHSKAGRHQDALGVFRSLSKQNIQPDPYTLTSWLSMICQSRMFDLLPKPALVFRYIDPDLVFCNALLS YLVKAGHPSDAAEFYDLMIELGFAPDKYSFAVLLSALCAAGKIYEAVKVYRGGVMSSQETDARIHTVIIVELIKAGKYLM AATVFKQAVVRKYPLDNVAYAVGICALLRSGRTPDACTFYDQMKENGLKPNAHTCNMMLFTFYKEKDLQKVNQMLKEMIG SRIELSDRNFLNLCNFPCRSDAYYSTSNLLAEMREMGLLPAKALHALSSDKYAESLEEKYEHCAEVNTELNLVLDSSSSE DLSDVAASVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 240 | 240 | - | – | |
| Gene3D | 48 | 181 | 134 | 1.8E-6 | ||
| PANTHER | 63 | 377 | 315 | 1.3E-70 | – | |
| ProSiteProfiles | 116 | 150 | 35 | 8.089 | ||
| ProSiteProfiles | 151 | 185 | 35 | 6.248 | ||
| Gene3D | 182 | 281 | 100 | 3.5E-12 | ||
| ProSiteProfiles | 218 | 252 | 35 | 8.002 | ||
| Pfam | 221 | 250 | 30 | 0.44 | ||
| Phobius | 241 | 260 | 20 | - | – | |
| ProSiteProfiles | 253 | 287 | 35 | 9.92 | ||
| Pfam | 254 | 299 | 46 | 1.1E-10 | ||
| TIGRFAM | 256 | 289 | 34 | 1.0E-4 | ||
| Phobius | 261 | 650 | 390 | - | – | |
| Gene3D | 282 | 380 | 99 | 2.2E-26 | ||
| ProSiteProfiles | 288 | 322 | 35 | 11.959 | ||
| TIGRFAM | 290 | 323 | 34 | 6.3E-8 | ||
| Pfam | 322 | 370 | 49 | 3.9E-9 | ||
| ProSiteProfiles | 323 | 357 | 35 | 11.433 | ||
| TIGRFAM | 325 | 358 | 34 | 2.1E-7 | ||
| PANTHER | 388 | 492 | 105 | 1.3E-70 | – | |
| Pfam | 390 | 438 | 49 | 7.7E-11 | ||
| ProSiteProfiles | 391 | 425 | 35 | 10.764 | ||
| TIGRFAM | 395 | 426 | 32 | 6.8E-7 | ||
| ProSiteProfiles | 426 | 462 | 37 | 7.333 | ||
| Gene3D | 456 | 639 | 184 | 4.7E-18 | ||
| Pfam | 496 | 540 | 45 | 1.7E-8 | ||
| ProSiteProfiles | 496 | 530 | 35 | 10.402 | ||
| PANTHER | 496 | 600 | 105 | 1.3E-70 | – | |
| TIGRFAM | 504 | 532 | 29 | 2.1E-5 | ||
| ProSiteProfiles | 531 | 565 | 35 | 8.232 | ||
| ProSiteProfiles | 566 | 600 | 35 | 5.503 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0000100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…