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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0008200 |
| Transcript ID | LotjaGi5g1v0008200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|V7CUW8|V7CUW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1793433..1797265) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGATTGAAGAAGAAACTCGAGTACTTGTCGTTGGTATCAAAGGTGTGCACTGAGTTGGAATCTCACACCGGCACC GGCGACAAGGTCCTCGCCGAGTTCATCACCGAGTTGGGTCGCGACTCCGAGAACGTCGAGGAATTTGATGCCAAGTTGAA GGAGAATGGTGCTGAGATGCCTGATTACTTCGTCAAAACACTCCTCACCATCATTCACGCCATTCTCCCACCGAAACCGA GGAAGGAGAAGGAGAAGGAGAGGGGTGGTGCTGCCGGTGGGAAGACTAAGTTCAAGGCTCTTGCTATAGCGGATGATAGG GACCGTGTCAAGGAGCTTCAGAAGGAGATTGAGAGTGAGGCCAGGCAGAAAGAACCGGCAGATGATGATGATAGATACGT GGATAGGGATAGAAGAGATAGACGCAGAGATCATCGGTATGGTGGAGATGACAGAAGGGATTATAGAAGGGGAAATGGTA GAGATAGAGATAGAGAGAGGGATAGGGATAGGGATGTGGACAGAGAGAGAGATAGAGATCGAGGGAGAGACAGGTATGAT AGGCGTAGGAGAGATGGGTATGAAGAGGATGAGCGTGGAAGGGAGGATGATGAAGGGAGAGGTCGGAGGGATTCAAGACA TGGGTATGAAGAGGATGAGCGCGGAAGGGGGGAGAATGGCGAAGGGAAAGGTCGTAGCGATTCAAGACATGGGTCTGGTG AGCCTGAACTGTATATGGTTTATAAAGGTAGAGTGTCAAGGGTTATGGATACTGGCTGCTTTGTTCAGTTGGATGATTTT AGAGGGAAGGAGGGTTTGGTGCATGTTTCTCAGATTGCTACTAGAAGGATTACTAATGCCAAGGATGTTATCAAGCGAGA TCAGGAGGTTTATGTGAAGGTGATATCGGTTTCTGGTAACAAGTTGAGTCTTGCCATGAGGGATGTTGATCAGCATACAG GGAAGGATCTTCTTCCGTTAAAGAAGAGCTCCGAGGATGATGCTCCGAGGATGAATCCGCAGGGCTTGAGGGATGGGCCG GTTTCCAGGACGGGGCTTTCTGGGATAAGGATTGTGGAGGAGGATTCTGTTGGTGGTTCTTCGCGGAGGCCTTTGAAGAG GATGAGCTCTCCTGAGATATGGGAAGCGAAACAGTTGATTGCTTCGGGAGTTATGAGTGTTTCGGAGTATCCGACTTATG ATGAGGAGGGAGATGGGTTGTTGTATCAGGAAGAAGATGCTGAGGAAGAGCTCGAGATTGAGATGAATGACGACGAACCT GCCTTCTTGCAAGGGCAGAGCAGGTACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGCTCTCTGGG TCGTGCTGCGGCGCTCCAGTCTGCACTTATAAAGGAGCGGAGGGAAGTAAGAGAGCAGCAACAGCGTACAATGCTTGATT CAATTCCAAAAGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGACGGGTGAAAGACATCTTGCCCAGGAGCTCAGG GGTGTTGGTTTATCAGCCTATGATATGCCTGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAGAGGTC AAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTGAAAAAAGAATTGATTCAGGCAGTCCATGATA ATCAGCTGCTGGTGGTGATTGGTGAAACTGGTTCAGGTAAAACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTAC ACCACAAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCGATGTCAGTTGCAAAGAGAGTTGCAGAAGAGTT TGGTTGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGTTTTGAGGATTGCACTGGACCTGATACTGTAATCAAGTACA TGACGGATGGTATGCTCCTTAGGGAAATATTGGTTGATGAGAGTCTATCACAGTATTCTGTTATCATGCTTGATGAAGCC CATGAAAGAACAATTCATACCGATGTTCTTTTTGGACTCCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGCGATTGAT TGTCACATCTGCTACTCTGGATGCTGAGAAGTTTTCAGGATATTTCTATAACTGTAACATCTTCAGAATTCCTGGGAGAA CTTTTCCTGTGGAGGTACTTTATACTAAACAGCCAGAAAGTGATTACCTAGATGCATCTTTAATCACTGTTCTACAGATC CACTTGACAGAACCTGAAGGGGACATTCTTCTATTTTTGACTGGTCAAGAGGAGATTGATTTTGCTTGTCAGTCTCTCTA TGAGAGAATGAAGGGGTTAGGTAAGAATGTACCAGAGCTGATTATTTTGCCTGTTTATAGTGCCCTTCCTAGTGAAATGC AATCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTAGTAGTGGCTACTAACATTGCTGAGGCTTCCTTGACT ATTGATGGAATATTTTATGTCATTGATCCTGGATTTGCGAAGCAAAATGTTTATAACCCCAAGCAAGGTCTTGATTCTTT GGTCATAACTCCAATCTCTCAAGCATCAGCCCAACAAAGAGCTGGACGTGCAGGGCGCACTGGACCTGGAAAGTGTTATC GTCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAATTTGGGGACG ACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCGCCATCACCCCAAGCTCT TATTTCTGCCATGGAGCAGTTGTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGG CAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCTGCTTGCCAGCGTAGACCTTGGATGCAGTGATGAGATTTTGACC ATAATTGCCATGATCCAGACAGGCAATATTTTTTACAGGCCCAGGGAAAAGCAAGCCCAAGCAGATCAAAAGAGGGCAAA GTTTTTCCAGCCCGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCAT GGTGTTTTGAGAATTTCGTTCAATCTCGATCCTTGAGAAGAGCACAGGATGTTAGGAAACAGCTTCTTACCATCATGGAT AAGTAAGATATTTATCTATCAATCATCCCACATGTTTTATTTGCTTTGATTTTTTTCTCTTTGCTATGTTCTCTACATGT CTTTGTTGTTCTACATATTTAGTTGCTCCCAATAGTATTATACATATGCATGTTCTTCTCTTTTTACATTGTGCTGTGAC TTGTAGTTTTTTTGATGACATTATTCTCATGCGTTTATTAGATTGAATTGTGTTCTAAATCACCATGACTTATATTCAGG TACAAGTTGGATGTTGTAAGTGCTGGAAAAAACTTCACGAAGATCAGGAAGGCTATCACTGCAGGTTTCTTCTTTCATGC AGCTAGGAAGGACCCTCAAGAAGGTTACAGAACTCTAGTTGAGAATCAGCCTGTTTATATCCATCCAAGCTCAGCTTTGT TCCAGAGACAGCCAGATTGGGTCATATACCATGAACTTGTGATGACTACTAAGGAATATATGCGTGAGGTCACCGTCATA GACCCCAAATGGCTTGTTGAATTGGCTCCAAGGTTCTTCAAAGTGGCTGATCCTACAAAGATGAGCAAGCGAAAGCGTCA AGAGCGTATAGAACCACTTTATGATAGATATCACGAACCAAACTCGTGGCGTTTGAGCAAGCGCCGCGCATGA
CDS sequence (LotjaGi5g1v0008200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTGAGATGCCTGATTACTTCGTCAAAACACTCCTCACCATCATTCACGCCATTCTCCCACCGAAACCGAGGAAG GAGAAGGAGAAGGAGAGGGGTGGTGCTTGCTCCGAGGATGAATCCGCAGGGCTTGAGGGATGGGCCGGTTTCCAGGACGG GGCTTTCTGGGATAAGGATTGTGGAGGAGGATTCTGTTGGTGGTTCTTCGCGGAGGCCTTTGAAGAGGATGAGCTCTCCT GAGATATGGGAAGCGAAACAGTTGATTGCTTCGGGAGTTATGAGTGTTTCGGAGTATCCGACTTATGATGAGGAGGGAGA TGGGTTGTTGTATCAGGAAGAAGATGCTGAGGAAGAGCTCGAGATTGAGATGAATGACGACGAACCTGCCTTCTTGCAAG GGCAGAGCAGGTACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGCTCTCTGGGTCGTGCTGCGGCG CTCCAGTCTGCACTTATAAAGGAGCGGAGGGAAGTAAGAGAGCAGCAACAGCGTACAATGCTTGATTCAATTCCAAAAGA TCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGACGGGTGAAAGACATCTTGCCCAGGAGCTCAGGGGTGTTGGTTTAT CAGCCTATGATATGCCTGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAGAGGTCAAAGCTTTCTATT CAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTGAAAAAAGAATTGATTCAGGCAGTCCATGATAATCAGCTGCTGGT GGTGATTGGTGAAACTGGTTCAGGTAAAACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACAAGAGGTA AAATTGGATGTACTCAACCCCGTAGGGTGGCTGCGATGTCAGTTGCAAAGAGAGTTGCAGAAGAGTTTGGTTGTAGATTA GGAGAGGAAGTTGGTTATGCCATTCGTTTTGAGGATTGCACTGGACCTGATACTGTAATCAAGTACATGACGGATGGTAT GCTCCTTAGGGAAATATTGGTTGATGAGAGTCTATCACAGTATTCTGTTATCATGCTTGATGAAGCCCATGAAAGAACAA TTCATACCGATGTTCTTTTTGGACTCCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGCGATTGATTGTCACATCTGCT ACTCTGGATGCTGAGAAGTTTTCAGGATATTTCTATAACTGTAACATCTTCAGAATTCCTGGGAGAACTTTTCCTGTGGA GGTACTTTATACTAAACAGCCAGAAAGTGATTACCTAGATGCATCTTTAATCACTGTTCTACAGATCCACTTGACAGAAC CTGAAGGGGACATTCTTCTATTTTTGACTGGTCAAGAGGAGATTGATTTTGCTTGTCAGTCTCTCTATGAGAGAATGAAG GGGTTAGGTAAGAATGTACCAGAGCTGATTATTTTGCCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATT TGATCCTGCTCCTCCTGGGAAAAGGAAAGTAGTAGTGGCTACTAACATTGCTGAGGCTTCCTTGACTATTGATGGAATAT TTTATGTCATTGATCCTGGATTTGCGAAGCAAAATGTTTATAACCCCAAGCAAGGTCTTGATTCTTTGGTCATAACTCCA ATCTCTCAAGCATCAGCCCAACAAAGAGCTGGACGTGCAGGGCGCACTGGACCTGGAAAGTGTTATCGTCTCTATACTGA GAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAATTTGGGGACGACTACTCTTAATA TGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCGCCATCACCCCAAGCTCTTATTTCTGCCATG GAGCAGTTGTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTT GGATCCACCGTTGTCCAAGATGCTGCTTGCCAGCGTAGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGA TCCAGACAGGCAATATTTTTTACAGGCCCAGGGAAAAGCAAGCCCAAGCAGATCAAAAGAGGGCAAAGTTTTTCCAGCCC GAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCATGGTGTTTTGAGAA TTTCGTTCAATCTCGATCCTTGAGAAGAGCACAGGATGTTAGGAAACAGCTTCTTACCATCATGGATAAGTACAAGTTGG ATGTTGTAAGTGCTGGAAAAAACTTCACGAAGATCAGGAAGGCTATCACTGCAGGTTTCTTCTTTCATGCAGCTAGGAAG GACCCTCAAGAAGGTTACAGAACTCTAGTTGAGAATCAGCCTGTTTATATCCATCCAAGCTCAGCTTTGTTCCAGAGACA GCCAGATTGGGTCATATACCATGAACTTGTGATGACTACTAAGGAATATATGCGTGAGGTCACCGTCATAGACCCCAAAT GGCTTGTTGAATTGGCTCCAAGGTTCTTCAAAGTGGCTGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGTATA GAACCACTTTATGATAGATATCACGAACCAAACTCGTGGCGTTTGAGCAAGCGCCGCGCATGA
Protein sequence (LotjaGi5g1v0008200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLRCLITSSKHSSPSFTPFSHRNRGRRRRRRGVVLAPRMNPQGLRDGPVSRTGLSGIRIVEEDSVGGSSRRPLKRMSSP EIWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEDAEEELEIEMNDDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAA LQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSI QEQRQSLPIYKLKKELIQAVHDNQLLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRL GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSA TLDAEKFSGYFYNCNIFRIPGRTFPVEVLYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMK GLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITP ISQASAQQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGTTTLNMKAMGINDLLSFDFMDPPSPQALISAM EQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQP EGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARK DPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERI EPLYDRYHEPNSWRLSKRRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 8 | 33 | 26 | - | – | |
| PANTHER | 22 | 899 | 878 | 0.0 | – | |
| PANTHER | 22 | 899 | 878 | 0.0 | – | |
| Coils | 158 | 178 | 21 | - | – | |
| Gene3D | 219 | 422 | 204 | 1.0E-89 | – | |
| SUPERFAMILY | 237 | 770 | 534 | 1.61E-133 | ||
| CDD | 242 | 420 | 179 | 5.71857E-128 | – | |
| SMART | 245 | 429 | 185 | 1.2E-32 | ||
| Pfam | 253 | 403 | 151 | 1.1E-7 | ||
| ProSiteProfiles | 257 | 420 | 164 | 19.821 | ||
| ProSitePatterns | 362 | 371 | 10 | - | ||
| Gene3D | 423 | 597 | 175 | 2.0E-71 | – | |
| CDD | 424 | 585 | 162 | 2.73962E-83 | – | |
| ProSiteProfiles | 445 | 618 | 174 | 17.276 | ||
| Pfam | 447 | 577 | 131 | 1.3E-12 | ||
| SMART | 473 | 577 | 105 | 1.4E-18 | ||
| SMART | 638 | 728 | 91 | 2.1E-41 | ||
| Pfam | 639 | 727 | 89 | 3.5E-25 | ||
| Pfam | 785 | 860 | 76 | 5.2E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0008200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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