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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0012100 |
| Transcript ID | LotjaGi5g1v0012100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT1G45000.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A; TrEMBL-Plants: tr|D7U4M5|D7U4M5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2660778..2663783) extracted from Lotus japonicus Gifu genome v1.2.
ATGACAGACGCTGCCGCTGAAGACGCCGCAAAACGCCGTAGTGCTGCGGCGGCGTACCAGAAGAAGCTCCTTCAACACAA GGAATTGGAATCCCGAGTACGATCAGGTTCGTTTCTTATCCTCTCGTTACTGCAATTCAATCTCGTTTTCGTTTTTCTTG AGTATTCAGAATGTCTAGGGTTTTGTTGCGATTGTGATGATTTTGCATTTTGAATCGCGAATTTGCAGTGAGGGAGAATT TGCGAGCTTCGAAGAAAGAGTACAATAAAACTGAAGATGACTTGAAGTCTCTTCAGAGCGTTGGACAGATCATTGGCGAA GTTCTCAGGCCTCTGGACAAAGAACGCTGTAATTGTTCTATCCTTTCATATCTGGCTATTCAATATACATATTGAGATTT AAGATTGAGATTATGTGCAAGAAGTTGATGTTTCATTTTTATTATTTATGTAATCAAATTAAGTAAAATTGATTTGTTTG TATATTTGGAGAAATTAACTGTAATTGTATGAGTGTGTAAACTTTGTGTAGGAACTAGGAATAGATACTCACTATTTAAT TAGTTAGCAATACTATTTGGCACGAATTATTGGTAAACGAAACCTTTACGAGTGAAATAATTTGTCCAATCAGTAAAAAG ATGGGATACAAGTTTCACTTCATGCTACAGGAGAGAGAAGGAAAAAAATCAAGTATGGCAACACGTAGGATTCGTACGTT TCGTTTCGTCACATTAACCATTTTCCTTAATTAGTTCATTTACCTGCTTGATAAGATGTCTTATTTGTTTCCTTGGTTGG TTGTTGTGAACTTGTGATTAGTGGTGAATGATTATTGTATGTTTTTGTTATCTCAGTGATTGTTAAAGCAAGCAGCGGGC CTAGGTATGTGGTTGGCTGCCGCAGTAAGGTAGACAAGGAAAAACTGACGTCCGGCACGCGAGTCGTTCTTGATATGACG ACACTCACCATAATGCGAGCCCTTCCACGTGAAGTAATGTTTATTTGATGCATATGTTCATGTTCTTGTTGGGTTGTCTA ATTTTGGTACCTTTTCTGAAAATCATCTGCTTGTTTCTTATCTGAAATTGACAGGTCGATCCAGTGGTTTACAGCATGTT GCATGAGGATCCTGGTAATGTTAGTTACTCCGCCGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGAGAATCAATTG AACTTCCTCTGATGAATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGTGATTTGATTACCTTTTCACTGC ACTATTTAGTCCCGGTCCTCCATTAGTGTTAAGTTATGTTGCTTTTTTTATCAACAAGTTCTCAATTCTGATCTTCCAGG GTGTTCTCCTTTATGGGCCTCCTGGTACCGGTAAAACATTGTTAGCTAGAGCAATTGCCAGTAATATAGATGCTAACTTC TTGAAGGTCAGTTTTTGTTTCTGTTCTGAACTCAATTATGTTTTGAAGTTTCCTTTGGTATAAATATACAGTTCCATTCT TTTGTAGGTTGTCTCAAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGGTATG CCCGTGATCACCAGGTAGATTCTTTTCTAAGGTTTCTTCCTTCCTGTTTATATATTCAATGAGAATGTAATTCTGAATCT CCACTTTGTTTGTTAAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTTAGTGAGGGAACA AGTGCAGATCGTGAGATTCAAAGAACACTAATGGAGTTGCTAAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTATA TCTTTCTTCATAATCCCCATTTAATTTAATTTGAAAACCATAATATTTGCTTTTAGATGAGGAGCTTTATCCTACTTTTG TATTTTGGTGGGAAGGCTAATAGATGGTGAACAATTGGTCAGCTTATAGAGTGACTGCATTTCAAAGTTTCTTAATTTTC ATGTGGTCTTTATTTTTTTCATATTGTTGAGGTATATAATTTTTGCTGATGTATAAGACTTCAAAGATGCAGTTGCAAAC ATGATGGTTAATGTTAGCAAATAAATTCTTGTGTGACCATTTATAATCCAAAAGATTGAGCTACTACTCCATGACATTTT TCCTGTCTGGAATAGCGAAGTTGTAATGCTTACTTTTTTATCAGCAACGAAGTTGTAAAGTTGAGCTGAAATTTGTCAGG AATTTTCTCTTTGTCAACTTTGTTTATACATTTGAATTTCCGTGTATCTAGTACAGGTTTATTTCATTTATATGAGATTT AATTGAAATATCAACCTTTTCTGATTAATTTGTCTTCTGGATATGGTGATTGATTCTATATCTAGAAATGATTGTCAACC AAATTTTAATATTGGGTTGATAACGGAATTTCTGTCTGCATGGATGTTGTAGGTTAAAATGATAATGGCAACAAACCGGC CTGACGTACTGGACCCTGCTCTTCTGCGTCCAGGTAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCA AGGATGGAAATTCTGAAGATTCACGCTGCTGGGATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTTAAGCTTGC TGAGGTGAGTCCAGTTTGGTTTAGTTTTGTTTGCCAATTGCTGCTTGTCTAATGTGCTTTATGTTGTTGCTAATTGCTCA GGGATTTAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGA TCCATGAAGATTTTATGAAGGTGAGTTCTTTCTTTGAGGAAGCAATTTTCTGTGTATTAATCATCTACAAAGGGATTAAC CCATCTTTATCACTCACGGGGAAATAACTTGACTTCTTGTTTCACTTCCAGGCTGTTAGAAAACTAAATGAGGCAAAGAA ACTTGAATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAA
CDS sequence (LotjaGi5g1v0012100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGGTATGCCCGTGATCACCAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTTAG TGAGGGAACAAGTGCAGATCGTGAGATTCAAAGAACACTAATGGAGTTGCTAAATCAACTTGATGGGTTTGATCAACTTG GGAAGGTTAAAATGATAATGGCAACAAACCGGCCTGACGTACTGGACCCTGCTCTTCTGCGTCCAGGTAGATTGGATAGA AAAATAGAAATCCCATTGCCAAATGAACAATCAAGGATGGAAATTCTGAAGATTCACGCTGCTGGGATTGCTAAGCATGG TGAAATAGATTATGAAGCTGTTGTTAAGCTTGCTGAGGGATTTAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTG GAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTAAATGAGGCA AAGAAACTTGAATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAA
Protein sequence (LotjaGi5g1v0012100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDR KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEA KKLESSAHYNADFGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 176 | 176 | 1.8E-121 | – | |
| PANTHER | 1 | 176 | 176 | 1.8E-121 | – | |
| Gene3D | 1 | 86 | 86 | 1.3E-28 | – | |
| CDD | 1 | 86 | 86 | 3.53892E-11 | – | |
| Pfam | 2 | 86 | 85 | 4.1E-21 | ||
| SUPERFAMILY | 2 | 161 | 160 | 1.33E-37 | ||
| ProSitePatterns | 56 | 74 | 19 | - | ||
| Gene3D | 87 | 157 | 71 | 2.4E-21 | – | |
| Pfam | 109 | 151 | 43 | 1.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0012100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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