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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0016100 |
| Transcript ID | LotjaGi5g1v0016100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0016100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3158394..3164927) extracted from Lotus japonicus Gifu genome v1.2.
GCCGGGAACTTAGAATCAAAATCGAGGAAGGTGGGGGTAGAGCAGCATTTGTGGGGTTGTTGCCGAATATTTACGCGATC CGACCGAAGAAGGTGTTGGAAGCAGCATTGAAGTCATTGGATGCAGTAATTCAAAGGCCGAGCTATGCCTAGTTTACCCA TATTGAGCCATGCCTAATTTATTCGGCATGCACACACAAGTGTTTGGGTAAACTTAGGCAAATAGCTTATGACCTATCTG TAAGTTTTGTTTTAATCTTATGCGGCTCAGAGTAGCTTATGAAGAAGTGTTTATACCTACCTATTAATATAAGCTATTTT GAGCTTATTTCAAAGTTTATTAAATTAAAATTAGCTTATGAATATGTGCATAAACGTTTATTGCCACAAACACTTAAGCT ATTTACCCAAATGCACTCTATATTGTTTGAGTGGTAACTACATTCTGAAGCCTACTGCAATTTTTCATTTGACATGAGCT CTAACATTTTCTTAAGCTAGTTGAAACTTGTGACCAAATTGCTTTTATGTGCTTGAAACTATTGTTTTGCAGGTGCAAGC AACCTGTTTCATTGTTGTTGAGATGGACCGTATATTAAGACCAGTGGGTCAGACAATCATACGTGACAAGGTTGAAATTC TGAATCCATTGGAGGAAATACTGAGAAGCATGCAGTGGGAGATCAGAATGGCATTCAACCAAGATAAGGAAGGGATTCTT TGTGCGCAGAAGACTATGTGGAGGTCTTGAATCTCTATAGTATACTGTTTTCTTGTACCATATCGACCATGAGTGCCACT ATGACTTGAAATATCATGATCTTTTTTTGTTGAGTTTAATATGTAAAGGGTATCCTTCATCTAACACATCAACCAATCAT CAATTCTGATCAATATAATATGTAAAGGAAAGTTGAGTTTGTAAAAAAACATTTGATTTATATTGATTGTTCAAATCTGT TTATTGATTATAGAATTTATGGAAAGTTATTTCTTTTTAAATAAATAACTAGTCTAGTCATATATAATAAAGTGGAATTT TCACTATAGAGAATAACTTATTACCCTTATTGTTTGGCCCGACTTCTTTTTATTTTTTAAGTTACTTGCTAAAGTTGGTC CAAACACAATTTATAAGAAACTCTTTAAAATTAAGTTACTTATTTTTTTACAAAGAAAAATAAAAGTGTCTTTAAATGAG AGTTTTTTTTTAAATAAGTTGCTGAGAGTGTTAACTCTTAGTCTTATTCACAAGTTACAATACTTGTTCCTCGTGTTTTC TTTTCTTTTTCTCCTCCATGGTTTCCTTATACTTGCTTCTCTCTAATGCTTTTCTTGCAATCTAAATTCACCATTCAACC ATACAAGAATTGTGTCATTTTTTTTGTTTATCATTTCATTTTGAATCAAAGTTGTAGTCATAGATGACCTAAAAGAACTC TACTTCTTGTGATTCATTCTCTCCATCTCTCTATTTCAGGCTTTAGCTTTGGTTATTATGATACTTCTTGCTTGATGCAA ATCATATTTATTTATCATCTTTGTGAGCGAAAGGGCAAAAGGAAAGCAGGATATATAGTTAGGTGTACTTTTTTGTTGAA AGGGGTAGCATTTATGCTATTTAAAGTGATGAGAATGCAGTCTGTGTGAGCAAAGCAAACAATAAAATATACTAAGTCAC ACTAGCTCCATCCAATGTGATGATAAGCCATCAAACAAGAAAAGGCATTAAAAGATATGAACAAGAGAGAACTATGAAAA AGAGACTTATAAACAAAAACTGAACTACTTCACTGGGATCGGGAACGGGCGGTCGGAATCTCCTGGCATGTCTCGGCATG TAGAATGAAAACATGAGAGGGATAGTCACCAGATAACCAAGCTCTTCAGATCCAGGTACCCTGCACCATAACATAGTCAG TCCAGTGTAAAAGCAGAACCCGGTGTTGGGTTTAAGGTACCAGCCAATACGGGATGGAAAGTTAGTGTGAATGGCGAGCA CCGGAGGGAAGCTCATCGTATAACCTGTGATCTGCTTTATGGTACTACTTAGTAGTTAAGGGCGGCTTTCAATTGTCAGT AACATAACATGTTCCAAGACACTGAGACAGATCAAGTACACTGTTCACAGAATCTTGACCACACAAACAAACAAACATCC ATCCACGTGAGGCTTGTAGAGAGAGAAAGCAAGACCAAAGGTAGGTTTTTTTGTTTAATCCCAACTCAATGAAGTTCCTC CGTTTTCCCCTCAAAACCTTTTGCCGCCACATGGTCCGAAACGGCATGTCGCCGCCGAACCCTTACATGTTCCGCAGCTT CGCCGCTGCCGCCGGGAACTTAGAATCAAAATCGAGGAAGGTGGGGTTAGCAGAAGCATTTGGGGGTTGTTGAAAGAAAT GAATGAGAAGGGTGTGGTCCGAAACCTGCCGAATATTTACGCGATCCGACCGAAGAAGGTGTTATAATCAGTATTGAAGT CATTGGATGCAGTAATTCAAAGGTTGATAGAAGAAAGGAGGATGACAGAGGCTGAGGAGGTTCTTGAGGAGATGTATCAC AAGGGTTTGACCCCTCATGAGAGGACTTACACTTGTCTCATTCATTCCTTCTGCCAAGAGTCGAGGGCTTCTAAGGCTGT AAAGGTTTTCAGAGAAATGATTGATAGAGGCTTTTCGCCCTCTCTTGATACATACAATGCGGTTATTCAAACGAATGCCT TTGCAGGGACGGGGATTGAGGTGGCTCTGGAGATTTTGAGGGAAATGCCTGAGAGGGGTTTGACCGCTGATGCTGTTAGT TATTGCCATGTAATATGCGCGTTATTGCTCCCACCCGAGGAGAAACTGGGGAAGGCTTTTGAAATGAAGAAGGATATGGA TGACAAGGGCATCTTGCCTGATTCTGTAACGTATGAGGTGCTTATAGACAACCTGTGCTGGGTGGGAAGACTGTCAGAAG CTTTTGATCTCTTCCGAGAGATGCTGCATCGTGGGGGGTTCTCGCCAGATGAGCATACTTATTTCAATTTGATGAATTGT TATTGTCTTCAAGGTGAATTCAGTAAGGCTTTTCATTTGCATCATGAAATGGTACACAAGGGTTTTTTGCCTGATTTTGT TACTGGGTTTTCACCCTCACTTGTTACATACAACGCGCTTATTTATGGGTATTGCTCTTTGGGGAGGGTTCAGGAGGCTC TCGAGATTTTCAGGGGCATGCCTGAGATGGGTTTGTCCCCTGATACTGTTAGTTATCGCCAAGTAATATCCGGGCTTTGC AAAATCAGGGAGCCGGTGAAGGCGTATGAACTGAAGCTGGAGATGGATAAAAAGAGGAGCTGTTTGAGTCTGAATGAAGA CACGTATGAAACCCTTATGGAACAACTGTCGGATGAAGATACTTATTCTAGTTTGATCAATGATTATTTAGCTCAAGGGG ACTTGGAAAAGGCTTATCAATTGGATTACGTAATGGGACACGATGGTTATTTGTCAGATAATGTTACCTTAAGTGTGTTG TTGAATGGACTGAATAAGATAGCTAGGACAACAGAAGCTAAGTGGTATCTTCTGTGGACGGTTTTTTTTAGGTGTTTTGG TATGCCAGCTTATATAATATATGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAGCGTCTGGTAGGGCCTGCCA TTACTTTCAGTGTGAAAGTAGCAATCAAAGCTCATCACACAATGCTTCATGGGAATTATAAGCCAGATGGAACAGTTTAT AATCTATTAATATTTGATCATTCTAGATCTCTTGAAGTTCATAAGGCCTATAATATGTACATGGAGATGGTGCATTATGG TTTTGTTCCTCATATGTTCTCTGTACTTGCTCTTATTAAAGCTCTACATTATGATGGAAGGTACAATGAGATGAGTTGGG TAATTCACAACACATTGAGGAGCTGTAATCTCAGTGATTCTGAGCTACTTAAAGTACTTAATGAAATTGATTTCAGCAAA CCTGAAATGACTGCTCTTCTGGATGTGCTATCTGAAATTGCCATGGATGGCCTGTTACTTGATGGTGGAAAGTGTTCATT TGCTTCAACAAGTACCTAATATCTTTGGTTTTGCTTGTTGAAATCTGTTACCATAAACCTTAAGCTGACTATTCCAGCTT GCATCTAGCATGCTTTGGTTTGGAGACTTGCCATATGGTAAATTCTCCCTTGCTCGGAAAGCAATTTATCATCTTTTATG TGAAACTCTTCAGCTATTAAAGACCTCCTTCTAGACCAGGTCATTTAGATCTTTTTTTTTTTAATTGTCAAGTATGAAGT AAGTTGCTTTCAATCATAAGTAGAAATTGTTTTCTTTTTGCTTTTTAAAGCAAAAGGTCTTTCTTACTATTGCCAATTTA CTTCCAGGTTGTTGGGAATCATGTTTTATGATTATATGAATTTCAATAATTTTGAATGAGGGTTGCTGAGATCAAGAAAG TATTATCTGACATGATCTGCCATTTATTATTTTACATGAATGATAATATTTGAATCTGTTCTCCCTAAACTCCCCGGGTC CCTAGCTCAGTGTGTAAATCACTAAGCTCAGGTTCGAGATTATTGTGAGAGTGAAGATGTTTTTCTCAAGTTCTTTATGT CTTCTTATAGGCTCTTTTTTGGTCTCTTGGGTTGTTGGGGGTTTGACTAAAATTATGTGTCTAATTACATGTTAAATGTG GTAATAATTGCTCTTTGGAGGTTGCGGGTGGCTATTTTCCGTTGAGGGACTCAGCCTTCCAAGCCCTTAAGCTTGTGCGC TTGATGGGTTTTAAGATAAGTCACGTTCCTTCTTTATGTCGGGCTATCATGTTCCCAGTAGCTCTTTGTCTTGCCATGTG GAGGTGGGAGAATCAGATAGCTGAATTTTTTCCATGTATTGTTTAAATTCAGTAGGCTCCATTCTTTGGCCTTCTTCTAT CTTTCCCTTACGAGATCTCTTTTCTTATCAGAAAGCAGAGTAGCAGACCGAATATCCCAGCAGTAGAAACTGCACCTTAT GTTGCCATTCGACAAATGGGATCACCTTTCCGGAGGATAACCCCTCCCGTGAATATATGGACTGCAATACATGTATTCTC TCCAACCACCGGCGACAATGTCCCATCATCAAGTAATGCGGGCTCCTCCTGTATGAGGTTGCTCCTCTGGTCAGTATTCG GCAAGCAGTTATGCTGCTCCCCCAGTTCGAAAAATGTACCAGCTCCAATCTGGTTATAACATGCTTGGATCAGGTTCTCT TTCACCTGAATGAGTTCTGATGTTTAGAGCTGCTCACTGAAGCTTCTGCCCAGAATTGATTCTGACTACAAAATCAATTG TAGAAGAGGTTCTAAACATGCACTTAGCACGTAATCTGCTCAAGTTTTTGCTTTTTATGTATGTTGCTGATATGGTAGTA ATAGTATACCTGCTGATAGGGGTGTTCATAACCAAACCAAATCATATTGCGTCAAGTGTATTGATGTGGAATTGCACTTG CAGGTCAGTGTGGCTGTGTTTGGGTTGAGTGATCTGCATCTGTCATAATAGATTTTGCTAGTTGGGATACAAAAATTGCG TAATAGATTTTGCTTGTGTGATCGTTTAAAAGCATGGTTAACTTCTGCTTCCACTCTGTCGTGCTATTGTTCTCAATACC TTCTACTTTTCCAATTTCACGGATTCTATTGTGTGATCTTTATGTTGCTGAAATCAGCAAGTGCCCAGAAAAGTTATATG CACAGTTTGAAAACTATGGTTCAATTTTATTTAGAAGTTATGTATATTAAAAATCATAATTATTGGGATCTATGAATCTT GCCTATTTTGATTAGTTTTCCAATTCTGATGTTTCAAACATGCTGATATTTCTCTTCTTTCTACCTCTCTTTCTCGTTAA AAGCTCGTTTTTTAGAAAATATATCTTCCCATTTTTAGAGCATAATTACAGCTATTGATCAGATGCCAAAAGCATGACTC TCCTGAACAGGAAGGCATTGAAAATCTCTTCTAGGACCTTGAAAGAACTGAATCAGAACAGAGAATGTGAGATGAAAAGT TTATTATCATTGAGAATGAACCGAAAATCTCTTGTAAAAAACATTTTACTTTTTGTCTTGCTCTCTTTTTCTGTTATAAT GATTAATGAACATGGCTTTTCTTTTTGACATATGATTAAAAAACCATGACATTGAACTATAATGAACACCTTGACAATGA AAATGAACAGAGAATGTATTTTTCCCCATGAACCTTGCTTATAATGAGCACCTTGACAGTGAACAAATATTATCAATATG TTACATTTTCTTGCAGCAATTGTCTTTTATGGCGGCATGTTATATGGAGCCATGGAGATTGAAGATTGACAGTGAAAGCA AGTTGTTATCTAGGAGCTGCAGGCTGCAACTGATTTAGTTTTAATTTTATTTGTGATGAAATATTGAACCAATAAGAACT TAATGCTTTATATTTGTTGGAGATTTTGATAATTGTCTTGACTTATTTATTCCA
CDS sequence (LotjaGi5g1v0016100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGGCTGAGGAGGTTCTTGAGGAGATGTATCACAAGGGTTTGACCCCTCATGAGAGGACTTACACTTGTCTCAT TCATTCCTTCTGCCAAGAGTCGAGGGCTTCTAAGGCTGTAAAGGTTTTCAGAGAAATGATTGATAGAGGCTTTTCGCCCT CTCTTGATACATACAATGCGGTTATTCAAACGAATGCCTTTGCAGGGACGGGGATTGAGGTGGCTCTGGAGATTTTGAGG GAAATGCCTGAGAGGGGTTTGACCGCTGATGCTGTTAGTTATTGCCATGTAATATGCGCGTTATTGCTCCCACCCGAGGA GAAACTGGGGAAGGCTTTTGAAATGAAGAAGGATATGGATGACAAGGGCATCTTGCCTGATTCTGTAACGTATGAGGTGC TTATAGACAACCTGTGCTGGGTGGGAAGACTGTCAGAAGCTTTTGATCTCTTCCGAGAGATGCTGCATCGTGGGGGGTTC TCGCCAGATGAGCATACTTATTTCAATTTGATGAATTGTTATTGTCTTCAAGGTGAATTCAGTAAGGCTTTTCATTTGCA TCATGAAATGGTACACAAGGGTTTTTTGCCTGATTTTGTTACTGGGTTTTCACCCTCACTTGTTACATACAACGCGCTTA TTTATGGGTATTGCTCTTTGGGGAGGGTTCAGGAGGCTCTCGAGATTTTCAGGGGCATGCCTGAGATGGGTTTGTCCCCT GATACTGTTAGTTATCGCCAAGTAATATCCGGGCTTTGCAAAATCAGGGAGCCGGTGAAGGCGTATGAACTGAAGCTGGA GATGGATAAAAAGAGGAGCTGTTTGAGTCTGAATGAAGACACGTATGAAACCCTTATGGAACAACTGTCGGATGAAGATA CTTATTCTAGTTTGATCAATGATTATTTAGCTCAAGGGGACTTGGAAAAGGCTTATCAATTGGATTACGTAATGGGACAC GATGGTTATTTGTCAGATAATGTTACCTTAAGTGTGTTGTTGAATGGACTGAATAAGATAGCTAGGACAACAGAAGCTAA GTGGTATCTTCTGTGGACGGTTTTTTTTAGGTGTTTTGGTATGCCAGCTTATATAATATATGATACTCTGATAGAGAACT GCAGTAATAATGAATTTAAGCGTCTGGTAGGGCCTGCCATTACTTTCAGTGTGAAAGTAGCAATCAAAGCTCATCACACA ATGCTTCATGGGAATTATAAGCCAGATGGAACAGTTTATAATCTATTAATATTTGATCATTCTAGATCTCTTGAAGTTCA TAAGGCCTATAATATGTACATGGAGATGGTGCATTATGGTTTTGTTCCTCATATGTTCTCTGTACTTGCTCTTATTAAAG CTCTACATTATGATGGAAGGTACAATGAGATGAGTTGGGTAATTCACAACACATTGAGGAGCTGTAATCTCAGTGATTCT GAGCTACTTAAAGTACTTAATGAAATTGATTTCAGCAAACCTGAAATGACTGCTCTTCTGGATGTGCTATCTGAAATTGC CATGGATGGCCTGTTACTTGATGGTGGAAAGTGTTCATTTGCTTCAACAAGTACCTAA
Protein sequence (LotjaGi5g1v0016100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEAEEVLEEMYHKGLTPHERTYTCLIHSFCQESRASKAVKVFREMIDRGFSPSLDTYNAVIQTNAFAGTGIEVALEILR EMPERGLTADAVSYCHVICALLLPPEEKLGKAFEMKKDMDDKGILPDSVTYEVLIDNLCWVGRLSEAFDLFREMLHRGGF SPDEHTYFNLMNCYCLQGEFSKAFHLHHEMVHKGFLPDFVTGFSPSLVTYNALIYGYCSLGRVQEALEIFRGMPEMGLSP DTVSYRQVISGLCKIREPVKAYELKLEMDKKRSCLSLNEDTYETLMEQLSDEDTYSSLINDYLAQGDLEKAYQLDYVMGH DGYLSDNVTLSVLLNGLNKIARTTEAKWYLLWTVFFRCFGMPAYIIYDTLIENCSNNEFKRLVGPAITFSVKVAIKAHHT MLHGNYKPDGTVYNLLIFDHSRSLEVHKAYNMYMEMVHYGFVPHMFSVLALIKALHYDGRYNEMSWVIHNTLRSCNLSDS ELLKVLNEIDFSKPEMTALLDVLSEIAMDGLLLDGGKCSFASTST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 102 | 102 | 2.0E-23 | ||
| ProSiteProfiles | 1 | 18 | 18 | 6.621 | ||
| Phobius | 1 | 347 | 347 | - | – | |
| PANTHER | 2 | 99 | 98 | 7.5E-74 | – | |
| ProSiteProfiles | 19 | 53 | 35 | 12.441 | ||
| Pfam | 21 | 63 | 43 | 1.3E-11 | ||
| TIGRFAM | 22 | 54 | 33 | 2.9E-10 | ||
| ProSiteProfiles | 54 | 89 | 36 | 8.659 | ||
| PANTHER | 73 | 201 | 129 | 7.5E-74 | – | |
| ProSiteProfiles | 90 | 126 | 37 | 7.377 | ||
| Gene3D | 103 | 201 | 99 | 3.3E-24 | ||
| Pfam | 126 | 175 | 50 | 1.3E-12 | ||
| ProSiteProfiles | 127 | 161 | 35 | 10.939 | ||
| TIGRFAM | 129 | 164 | 36 | 1.7E-6 | ||
| SUPERFAMILY | 138 | 311 | 174 | 2.94E-5 | ||
| ProSiteProfiles | 163 | 197 | 35 | 11.816 | ||
| TIGRFAM | 170 | 198 | 29 | 3.2E-7 | ||
| Gene3D | 202 | 289 | 88 | 1.0E-21 | ||
| PANTHER | 202 | 289 | 88 | 7.5E-74 | – | |
| Pfam | 205 | 254 | 50 | 6.8E-15 | ||
| ProSiteProfiles | 206 | 240 | 35 | 13.855 | ||
| TIGRFAM | 208 | 242 | 35 | 4.5E-11 | ||
| ProSiteProfiles | 241 | 275 | 35 | 8.298 | ||
| TIGRFAM | 243 | 274 | 32 | 0.0019 | ||
| Gene3D | 290 | 359 | 70 | 3.3E-6 | ||
| PANTHER | 291 | 474 | 184 | 7.5E-74 | – | |
| ProSiteProfiles | 291 | 325 | 35 | 8.506 | ||
| Pfam | 294 | 314 | 21 | 0.48 | ||
| Phobius | 348 | 367 | 20 | - | – | |
| Gene3D | 360 | 501 | 142 | 2.9E-9 | ||
| Phobius | 368 | 435 | 68 | - | – | |
| ProSiteProfiles | 409 | 443 | 35 | 8.868 | ||
| Pfam | 412 | 441 | 30 | 0.42 | ||
| Phobius | 436 | 455 | 20 | - | – | |
| Phobius | 456 | 525 | 70 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0016100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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