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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0043300 |
| Transcript ID | LotjaGi5g1v0043300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Desaturase; TAIR: AT3G61580.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|O04353|DES6_BOROF Acyl-lipid (9-3)-desaturase; TrEMBL-Plants: tr|G7I9X4|G7I9X4_MEDTR Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi5g1v0043300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7285881..7287239) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAAGCAATATCGCCGGGAAAGAGAACCTTCATTTCGTTAGAAGAGCTAAAGCAACACAACAAGCGCGGCGACGC GTGGATCTCAATCGACGGCAAGATCTACGACGTCTCCGACTGGCTCAACCACCACCCCGGCGGCGAGCTTCCCCTCCTCA ACCTCGCCGGCCAGGACGTCACCGACGCGTTCCTCGCCCTCCACCCTGTCTCCGCTCGCCGCAACCTCCCCGCCCTCTTC ACCGGCGTCTACCTCCGCGACTACGCCGTCTCCGACGTCTCCCGCGACTACCGGAGCCTCGCCTCGGAGCTCACGAAGAT GGGTCTCTTCGACAAGAAGGAGCACGGCGCGCTCATCTCGCTCTGCGTCATGGCGGTGCTGTTCTGCGCCAGCGTCAGCG GGGTTCTCCTCTCCGACAGCGCGTGGGTGCATGTGGGTTGCGCCGCCTTGATGGGGTTCCAGTGGATTCAGAGTGGGTGG ATTGGGCATGATTCTGGGCACTACCAGATCATGGTGAACCGGAGATTCAACCGGTTTGTTCAGATCCTCTCTGGGAACTG TCTCACTGGGATCAGCATTGGGTGGTGGAAGTGGAACCACAATGCTCACCACATTGCTTGTAACAGCCTTGACTTTGACC CTGATCTTCAACACTTACCATTCTTTGTGGTTTCTTCCAGGTTCTTTTCTTCACTCACTTCATGCTTCTATGAGAGGAAG ATGAACTTTGACCCTGTTGCTAGATTCTTAGTCAGTTACCAGCATTTGTCATATTACCCTGTAATGTGCTTTGCTAGAAT CAATTTGTTTGCTCAGTCTTTCATGTTGTTGTTGTCCAAGAGAAAGGTGCCTAATAGATGGGTGGAGCTTTCAGGGTTGC TTGTGTTCTGGATTTGGTATCCATTGTTGGTTTCATGCTTGCCCAATTGGGGTGAGAGGGTTTTGTTTGTGCTTGTTTCA TTTTCTGTTACTGGGATTCAGCATGTGCAGTTCACTTTGAATCACTTCTCAGCAAGTGTGTATGTTGGTCCACCAACTGC TCATGATTGGTTTGAGAAGCAGACTCATGGGACTCTTGATGTCAGTTGCTCTCCTTGGATGGATTGGTTTCATGGTGGCT TGCAGTTTCAAGTGGAGCACCACCTTTTTCCGCGGCTTCCCCGGTGCCATCTCAGGAAAATTTCACCCCTGGTTAAGGAT CTGTGCAAGAAACACAATCTTCCTTATAATTGTGTGTCCTTCTGGAAAGCCAATGTGCTGACGCTTCGGACGCTCCGGAA CGCCGCCTTGCAGGCTCGGGACCTTTCTAATCCTGTTCCCAAGAATTTGGTTTGGGAAGCTGTTAATACTCATGGTTGA
CDS sequence (LotjaGi5g1v0043300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGCAATATCGCCGGGAAAGAGAACCTTCATTTCGTTAGAAGAGCTAAAGCAACACAACAAGCGCGGCGACGC GTGGATCTCAATCGACGGCAAGATCTACGACGTCTCCGACTGGCTCAACCACCACCCCGGCGGCGAGCTTCCCCTCCTCA ACCTCGCCGGCCAGGACGTCACCGACGCGTTCCTCGCCCTCCACCCTGTCTCCGCTCGCCGCAACCTCCCCGCCCTCTTC ACCGGCGTCTACCTCCGCGACTACGCCGTCTCCGACGTCTCCCGCGACTACCGGAGCCTCGCCTCGGAGCTCACGAAGAT GGGTCTCTTCGACAAGAAGGAGCACGGCGCGCTCATCTCGCTCTGCGTCATGGCGGTGCTGTTCTGCGCCAGCGTCAGCG GGGTTCTCCTCTCCGACAGCGCGTGGGTGCATGTGGGTTGCGCCGCCTTGATGGGGTTCCAGTGGATTCAGAGTGGGTGG ATTGGGCATGATTCTGGGCACTACCAGATCATGGTGAACCGGAGATTCAACCGGTTTGTTCAGATCCTCTCTGGGAACTG TCTCACTGGGATCAGCATTGGGTGGTGGAAGTGGAACCACAATGCTCACCACATTGCTTGTAACAGCCTTGACTTTGACC CTGATCTTCAACACTTACCATTCTTTGTGGTTTCTTCCAGGTTCTTTTCTTCACTCACTTCATGCTTCTATGAGAGGAAG ATGAACTTTGACCCTGTTGCTAGATTCTTAGTCAGTTACCAGCATTTGTCATATTACCCTGTAATGTGCTTTGCTAGAAT CAATTTGTTTGCTCAGTCTTTCATGTTGTTGTTGTCCAAGAGAAAGGTGCCTAATAGATGGGTGGAGCTTTCAGGGTTGC TTGTGTTCTGGATTTGGTATCCATTGTTGGTTTCATGCTTGCCCAATTGGGGTGAGAGGGTTTTGTTTGTGCTTGTTTCA TTTTCTGTTACTGGGATTCAGCATGTGCAGTTCACTTTGAATCACTTCTCAGCAAGTGTGTATGTTGGTCCACCAACTGC TCATGATTGGTTTGAGAAGCAGACTCATGGGACTCTTGATGTCAGTTGCTCTCCTTGGATGGATTGGTTTCATGGTGGCT TGCAGTTTCAAGTGGAGCACCACCTTTTTCCGCGGCTTCCCCGGTGCCATCTCAGGAAAATTTCACCCCTGGTTAAGGAT CTGTGCAAGAAACACAATCTTCCTTATAATTGTGTGTCCTTCTGGAAAGCCAATGTGCTGACGCTTCGGACGCTCCGGAA CGCCGCCTTGCAGGCTCGGGACCTTTCTAATCCTGTTCCCAAGAATTTGGTTTGGGAAGCTGTTAATACTCATGGTTGA
Protein sequence (LotjaGi5g1v0043300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEAISPGKRTFISLEELKQHNKRGDAWISIDGKIYDVSDWLNHHPGGELPLLNLAGQDVTDAFLALHPVSARRNLPALF TGVYLRDYAVSDVSRDYRSLASELTKMGLFDKKEHGALISLCVMAVLFCASVSGVLLSDSAWVHVGCAALMGFQWIQSGW IGHDSGHYQIMVNRRFNRFVQILSGNCLTGISIGWWKWNHNAHHIACNSLDFDPDLQHLPFFVVSSRFFSSLTSCFYERK MNFDPVARFLVSYQHLSYYPVMCFARINLFAQSFMLLLSKRKVPNRWVELSGLLVFWIWYPLLVSCLPNWGERVLFVLVS FSVTGIQHVQFTLNHFSASVYVGPPTAHDWFEKQTHGTLDVSCSPWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPLVKD LCKKHNLPYNCVSFWKANVLTLRTLRNAALQARDLSNPVPKNLVWEAVNTHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 115 | 115 | - | – | |
| PIRSF | 1 | 439 | 439 | 1.6E-133 | ||
| Gene3D | 3 | 84 | 82 | 2.4E-21 | ||
| SUPERFAMILY | 8 | 86 | 79 | 1.09E-25 | ||
| PANTHER | 9 | 452 | 444 | 3.1E-232 | – | |
| PANTHER | 9 | 452 | 444 | 3.1E-232 | – | |
| ProSiteProfiles | 10 | 94 | 85 | 23.347 | ||
| SMART | 13 | 85 | 73 | 4.1E-24 | ||
| Pfam | 14 | 81 | 68 | 3.6E-20 | ||
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 116 | 135 | 20 | - | – | |
| Phobius | 136 | 140 | 5 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 141 | 158 | 18 | - | – | |
| Pfam | 142 | 411 | 270 | 2.0E-34 | ||
| CDD | 145 | 407 | 263 | 2.61153E-68 | – | |
| Phobius | 159 | 178 | 20 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 179 | 198 | 20 | - | – | |
| Phobius | 199 | 217 | 19 | - | – | |
| Phobius | 218 | 237 | 20 | - | – | |
| Phobius | 238 | 257 | 20 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 258 | 278 | 21 | - | – | |
| Phobius | 279 | 289 | 11 | - | – | |
| Phobius | 290 | 307 | 18 | - | – | |
| TMHMM | 290 | 312 | 23 | - | – | |
| Phobius | 308 | 313 | 6 | - | – | |
| Phobius | 314 | 333 | 20 | - | – | |
| Phobius | 334 | 452 | 119 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi5g1v0043300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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