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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0065200 |
| Transcript ID | LotjaGi5g1v0065200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication protein A 32 kDa subunit-like protein; TAIR: AT2G24490.1 replicon protein A2; Swiss-Prot: sp|Q9ZQ19|RFA2A_ARATH Replication protein A 32 kDa subunit A; TrEMBL-Plants: tr|A0A0L9V123|A0A0L9V123_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0065200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10895351..10899409) extracted from Lotus japonicus Gifu genome v1.2.
TGGCGGGAAACAAAATAAAAGTAAAAACCACCCCCATTTCTAAATCAGTTCATTTCCCACTTCTTGTACTTGCTATCAAT CTCTCTCTTCTTCAATTCTCCTCCCTAGGGTTTCACAGATGTTCTCCGTCACCCAATTCGATTCCTCCTCCGGTGGCGGC GGTTTCACCTCCACACAGCTCAACGATTCTTCGCCGGCACCGCAAAAAGTAAACCCTAATTTTCTCATCTCTCGTATATA TTTTCATGGAATCAAATCAACAAATAACGCAGTTGTGGTTTTCTTTTTTGCTGTTTCGTTTGCTTATTTTTTTGTCTACC TTCCCTCTAGGGCCGTGAATCGCAGGGTTTGGTTCCGGTGACAGTGAAGCAGATCAATGAAGCCTCTCAGTCTGGTGATG AAAAGTCAAGTTTCGTGATCAACGGTGTAGAACTCACCAATGTATGGCTCTCTCTCTGTCTTTGTTTATTGTGGTCTTCA ATTTCTGCTTAAGTTGTTAGCATTTTGGTTCTGCTGTTTGGGATCTTAATAATTTTTGTGATTATTTGGTTCTTTTGTTT GGGATCTTAATAATTTTCATGATTGTTTGGTTCTTTTGATTGGGATCTTAATAATTTTCATGATTATTTGGTTCTTTTGT TAGGGATCTTAATAATTTTTATGGTGCTGTATGAGTATGTTTGTATAGAAGGTTCTTAAAAGGAAGAATATATATATATA TATATATATATATATATATATATATATATATATTAAGTTAAGATAACTAAATAGTCTTATAAAAATAAGTAAAATACAGG GCTTAAGTTTCATAAGAACTTATTTTTTCTAAGAAATTGTTTAATTGAAAATTTATTTCCTTGAATGGAAAATTTTACCC TCTTTTTGCTTTTGCTTCAAAACTCTATTCAAACAATACACTGGTTTGTTTGAAATGAATAGAGTCTTAGTGCCCTAGGT TTGAAATTTAGGGGAAAAATGATTGTATCATGGTTTATTTGTCCTATATTCAAAAGTTGTTTATATAATTTTGGTTCAGG TGACGCTGGTTGGAATGGTGTTTGAGAAAGCAGAGAGAAACACTGATGTCAATTTTGTTTTAGATGATGGGACAGGGCGA ATCAAATGTCGAAGATGGTATGCATGCCAAAAGCTTGCATTTGTGTTCCATGTTTATGGCTCTTTTTGGAAAAAAAATCC CCTGCTGTTGATAGTAGTCTGAATTTCTGATTGGTTGTTTTTTCAGGATCAATGATGCTTTCGACACACAGGAAGTGGAA GAAATAATGTAAGTTCTTAACCAAGGATGCTGGTGGTCCATAATAAACTAGTCTTTAGTTGTTAGTTTCTCACCTTCTCT AATTATTTGATGATAGGAATGGTATGTATGTTCGTGTTAATGGGCATTTGAAAAGCTTCCAAGGTGTAAGGCAGGTTGCA GCCTTTTCTGTCAGGTATGTGTGCTAAACCTATTACTATGTTTTATCAGTTGTCCCACGGTTCTTTATTTTACATTTAGT TTTAGTATATTAGTGTTTCCTCCAAAATTGGAGGTGGGAGGACAAGTCAGAGATTGATAAAACCAGAGCCCTGAAATTGA CCCAACTACCTACATCTCCCTGTTGGGTTGTTGGCTAACAGGATTGATCCTAAAGCAGTTTATCATGAGGATTAGAACAA TCAAAAGCATTTACTTTTGATGGTTCAAATCATCACCACTCAATTGCTTTCATTGTCCAAGTTTTGCTTATTAGTGGGTT TGACCCCTGCTTGAGAACTGTTAATGGTATGCATTAGGGTGTTTTATCTGGATTGTATTTGCCTCTAATGTATGCTTCTG GCTGTCTTAAGATGTTTCATTAATTGATGTAGCAGAGGATCTCATTAGTTTCTTCTGTTTTATTTAACTTTGAAACATAT CATTTTGTATTTACCTTTATTCAGTTATAGAATTTTTTGATCAAAACAAACTTTTATATATATATATATTCCTGTTGCTT CTGGTCATTAGTATAAACTTCTATCTCTTTGAAGAACATTTTCAGAATTCCGTCCTCTATTTATCCTTTATAGTCAGTGT GAATGAATATTTGACCGGGGGGTGTCAAGCATTATACCTCATAGTCGTAGAATATGTGCTTTTCATTTTGGCATCATGGA TGGCGTTTGCCTTGCTTAGCAGGCTCTGTCAGATTAAATGCTTTTTGCAAAATCATTAATTTGAGAGTTCAGGTTGGAGT GACACTTGGAAATTTTATAACATTGAACACATTTGTATAAAATCCTGACAAAGACATCAATTGGCGCATAATTCTTTACA GTAACTTTTTTTCGCCCTTTTGTGTTTCTGGGATTATATTATAACTATGCACAGTCTGGATTTTTTTGATGGTTGGAAAC TGGCAATTTAATTATATAACTGGTGTATCTGATAAGTATGATCTAATTCAACTTATTTTAAATTAAACAATAACTATTAT TTTCTTAGGATTCAATCTTTGTTCTCTCCTTGCTTATGGGTGTCCCTGTTAATAGAGGGTAGCATTTGGATTTTTCAAAA TTTCCCCAAGAGTAATGATTCTCTGGCTTGAAGATTGGTGGTTTATCTGATTGATAAATTTACCTCTGAATCACAAAACG TGATATCTAGTTGTGGAAGAGTGACATGCCAGATGACCTTGTGTAGTTTTCTTTACCTTGAGAGAATCTTTAAATTGGCA AATTGTCTGTCTTAATTAATCATAAGCTTATTTCATGTTTGTGGCGTTTCATAGGCCTGTGGTGAATTTTGATGAGATCC CTTTTCACTTCATTGATTGCATACATCACCACCTCCGCTCCAAATTAAAGGTACGCATGGTTCCATTTATCTGTTATCTG TCCATCTATTTTTTGTTAGATCATTCTGATGATCGATGGCAGTGGATACTGCATAAACTTTCAGGAATTTCATCAACTGA GAATTGTATATTAATCTATATGATCATTATAAGTGTTGACTTTTCAACTAAATCGCATGTTTGGATACATAGGAGAAAAC TATGGTGAAGTCAAAATCACAGTGGACAAAAGCAACTTCACTAAGCTTTTGCGACTGTCCATTATGATTTTAGCCTCACT TTGGTTCTCCACCTTTTATCTAAACATGCCTTGCTGCATGATTATTTAATTCAATGCCTTATTTTTCCATTTTGATTATA GATGGAGGGAACCATATCTACAGATCCTCCTGCATCAGACTCATCTTTGAAAACTCCTGTCAGAAACACATCTAATGGAT CTCAGGCACCATCATCAACTCCTGTAAGATATTTGATATTTATTGCTATAGTAGTTTAGTTAGATTGGAGATCGATGACT TAACTAGTAACTTTCCCACCCTCAGGCATATGCACAATATGGTGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTG ACTATCTGCAGCAGCATTCAGACATGTAAGTTATTCATTGCTTTTTTTTTTTTTGTATTTGTTACCTTTCATTAGGTTTA TTATGATACTTCTCTTGAAACAATATTCACTTGTGCGTTATGATGTTGAACTATATCATAATTGATCTTTAATTGCAGGT CGGATGATCGGGGAATACATGCTAACGAGCTATCTCGAGAGCTCAAGCTTCCATTGGACAAGATCATGTAAGTGCTCTTT ATCTATTTATTTATTGTGGGTATGCAATGTATTTACTTATGTATTTCCAAACTGTTTATGATGGCCAGGTTATCGCTGAG GACTCTTGGAGATGATGGTTTAGTATACTCCACCATAGATGACTTCCATTACAAACAAGCTTGATATTTTGTCATTTTTC AAATATAGCTAGGGATTGTGCTGTGGACATATTGATGTTTGTCCACTACTCTATTTTGATTTATTTTAGGCTTCTACATG TAGATATGCTTTTGGATCGTATGAATCACTTTTATTGCCCAAATTCATGAACCCTTGTTAACTGCATTGTCTTGCTTGAA AACATTTTTCACCTCCACTTTATTTATAATACATGGAAATATTATTATCTTGACCCCAG
CDS sequence (LotjaGi5g1v0065200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCCGTCACCCAATTCGATTCCTCCTCCGGTGGCGGCGGTTTCACCTCCACACAGCTCAACGATTCTTCGCCGGC ACCGCAAAAAGGCCGTGAATCGCAGGGTTTGGTTCCGGTGACAGTGAAGCAGATCAATGAAGCCTCTCAGTCTGGTGATG AAAAGTCAAGTTTCGTGATCAACGGTGTAGAACTCACCAATGTGACGCTGGTTGGAATGGTGTTTGAGAAAGCAGAGAGA AACACTGATGTCAATTTTGTTTTAGATGATGGGACAGGGCGAATCAAATGTCGAAGATGGATCAATGATGCTTTCGACAC ACAGGAAGTGGAAGAAATAATGAATGGTATGTATGTTCGTGTTAATGGGCATTTGAAAAGCTTCCAAGGTGTAAGGCAGG TTGCAGCCTTTTCTGTCAGGCCTGTGGTGAATTTTGATGAGATCCCTTTTCACTTCATTGATTGCATACATCACCACCTC CGCTCCAAATTAAAGATGGAGGGAACCATATCTACAGATCCTCCTGCATCAGACTCATCTTTGAAAACTCCTGTCAGAAA CACATCTAATGGATCTCAGGCACCATCATCAACTCCTGCATATGCACAATATGGTGTGGATGGACTCAAGGATTGTGATA AATTGGTTATTGACTATCTGCAGCAGCATTCAGACATGTCGGATGATCGGGGAATACATGCTAACGAGCTATCTCGAGAG CTCAAGCTTCCATTGGACAAGATCATGTTATCGCTGAGGACTCTTGGAGATGATGGTTTAGTATACTCCACCATAGATGA CTTCCATTACAAACAAGCTTGA
Protein sequence (LotjaGi5g1v0065200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSVTQFDSSSGGGGFTSTQLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAER NTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSVRPVVNFDEIPFHFIDCIHHHL RSKLKMEGTISTDPPASDSSLKTPVRNTSNGSQAPSSTPAYAQYGVDGLKDCDKLVIDYLQQHSDMSDDRGIHANELSRE LKLPLDKIMLSLRTLGDDGLVYSTIDDFHYKQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 272 | 272 | 6.4E-130 | ||
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PIRSF | 1 | 273 | 273 | 3.7E-66 | ||
| PANTHER | 1 | 272 | 272 | 6.4E-130 | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| Gene3D | 29 | 163 | 135 | 7.3E-46 | – | |
| SUPERFAMILY | 37 | 161 | 125 | 1.84E-36 | ||
| CDD | 67 | 160 | 94 | 1.42655E-41 | – | |
| Pfam | 68 | 139 | 72 | 2.6E-9 | ||
| MobiDBLite | 168 | 200 | 33 | - | – | |
| MobiDBLite | 172 | 200 | 29 | - | – | |
| Pfam | 185 | 267 | 83 | 5.6E-12 | ||
| Gene3D | 203 | 273 | 71 | 3.7E-10 | ||
| SUPERFAMILY | 207 | 271 | 65 | 9.59E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi5g1v0065200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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