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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0069100 |
| Transcript ID | LotjaGi5g1v0069100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q9ZUS0|H2B4_ARATH Histone H2B.4; TrEMBL-Plants: tr|I3T995|I3T995_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0069100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11456091..11456513) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTCCCAAGGCAGAGAAGAAGCCGGCAGAGAAGAAGCCCGCGGCGGCGGAGAAGGCACCGGCGGAGAAGAAGCCGAA GGCGGAGAAGAAGATCTCGAAGGACGCCACCGGCAGCGAGAAGAAGAAGAAGCGCACGAAGAAGAGCGTGGAAACCTACA AGATCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATCATGAACAGC TTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTCGCCAGGTACAACAAGAAGCCTACCATAACCTC TCGTGAGATCCAGACTGCAGTGCGTTTGGTTCTTCCTGGTGAATTGGCTAAGCATGCTGTTTCTGAAGGGACTAAGGCTG TGACGAAATTCACCAGTTCTTAG
CDS sequence (LotjaGi5g1v0069100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCCAAGGCAGAGAAGAAGCCGGCAGAGAAGAAGCCCGCGGCGGCGGAGAAGGCACCGGCGGAGAAGAAGCCGAA GGCGGAGAAGAAGATCTCGAAGGACGCCACCGGCAGCGAGAAGAAGAAGAAGCGCACGAAGAAGAGCGTGGAAACCTACA AGATCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATCATGAACAGC TTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCCAGGCTCGCCAGGTACAACAAGAAGCCTACCATAACCTC TCGTGAGATCCAGACTGCAGTGCGTTTGGTTCTTCCTGGTGAATTGGCTAAGCATGCTGTTTCTGAAGGGACTAAGGCTG TGACGAAATTCACCAGTTCTTAG
Protein sequence (LotjaGi5g1v0069100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKAEKKPAEKKPAAAEKAPAEKKPKAEKKISKDATGSEKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNS FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 140 | 140 | 2.2E-84 | – | |
| MobiDBLite | 1 | 48 | 48 | - | – | |
| PANTHER | 1 | 140 | 140 | 2.2E-84 | ||
| Gene3D | 3 | 140 | 138 | 7.0E-60 | ||
| Pfam | 5 | 116 | 112 | 1.1E-22 | ||
| SUPERFAMILY | 25 | 140 | 116 | 1.39E-52 | ||
| SMART | 43 | 139 | 97 | 4.6E-73 | ||
| PRINTS | 53 | 71 | 19 | 2.9E-49 | ||
| PRINTS | 72 | 92 | 21 | 2.9E-49 | ||
| PRINTS | 94 | 111 | 18 | 2.9E-49 | ||
| ProSitePatterns | 108 | 130 | 23 | - | ||
| PRINTS | 111 | 124 | 14 | 2.9E-49 | ||
| PRINTS | 124 | 137 | 14 | 2.9E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0069100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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