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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0083600 |
| Transcript ID | LotjaGi5g1v0083600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G53190.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072VVN7|A0A072VVN7_MEDTR Pectate lyase; Found in the gene: LotjaGi5g1v0083600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:14061093..14067464) extracted from Lotus japonicus Gifu genome v1.2.
TCTTATCCTAATATTATAAATACAAGAGAGATTGCACTAGCAGCATATCCCATCCCACTATTTCTCTATCTCTTATTCTT CTTTTCTCCTCCCTTACTTGCTTACTCTTTATTCATAATACGAAACAAATTATAAGGAGCAAAATCACTCTAATAGTGTA CCTTATAACTCAAGGTGCACTAAAATAAAAAGGAAAATATAAATGACAGTGAAATTGAGAGCTTAATTAGGAAAGTGATT ATCCTATGTTTGGGTTCGACTCTACACCATTGGTTGCTAATTCCTTTAATCACGGAACTTCACACTTTCACTGTGTATTA ATAGTTTAATAGTCAAATACTGCTAAACCAAGACTGGTAACAAAGTAACAACCTTTTAGGAGAAGCAGCCATGGTTCTTC TACCTACCCACAATGAGTGACTATAGTGAGTGTGAACTGTAGCAATCTCCCACCTAGCAGCACCAGTTGGCGCCTGAACT CAGCAGGGAAACCCTCTCCTTCATCAACGATGCTTCAAACAACCTGCATTTTACTCATCTCTGCAGTTGTGGGTTCGTTT TTTCCACATGGAAGAGCAATGCTGAACCTCACTCTGCCTGGTCAACATCCTGACCCTGAAGCTGTTGCCCGAGAAGTTCA CTGGTACCTACATTGTTCCAAGACCTCATTTTTCTGTCTTCTTACTCTTCAAATTCCTGTCTTTTTAGCTGTATGATGCA AAACATTGACTCATTTAGGCCTCTTATAATTTCCCCCTCATGTTTATGACCCTGCATTGCAAAGCAGGGGAAAAATGATA GATCTGTGCTTATGGGTCATAACTCATAACCCAGAACCCTTACTCTTCATTTTTCTTTTTCTATTTTGTCATCTTGACCC AAAAAAAAAGGTTACTCCTTTCTACTCACTAGTCACTAATTGCAGCATAAATTGGTTCATTTTGTTAGAAATAGCTAGAA GAGTAAATACTCAATTTTGTCCTTGAAAGTGTGAGTGTTGGGCAAGTTGTCCCCAAAGAATAGAAGAAGAAAACACCTAT GTGAGTTTTGATTGTGTAAAATGTTAGTTAAGTTGGTTCATGCGGTCAGGCAAAATGTCGAACAAGTTAATATGTGTAGC GATTAACTTGACTGACCGCGAGGGTATTTCATTCTACTCGGGACCAACTTGACCGATCGCCAGAACTTTCATTCTTTTAT AGACTAATTTGTCTGGCGCTTACATTTTTAGAGATGGAATTGAACATTCACTCGAAATAACTGTTCATGTGCATTGTACC CAACTACCTAAGCTGGTTAAGATTTTAGGATAATTGGTTTATAAAATAGCATTAGAGATTGTATGACAGTGTTGTACAGT TGGATAGTTGGTGCCCCACTTAAACCCAATTGGCTTCTTTTTTGAACTTTTGGGATAGTTGGTTGTTGATACATTTTTGC TTTGTAGGAAAGTGAATGCCTCACTTGCAAGGAGGGAAATGCTAGCAGTATCCGAGAAAGATGTCTCAACATCATGCCTC ACAGGGAATCCCATTGATGATTGCTGGAAATGCGACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCCGACTGCGCCAT CGGGTTCGGGACAGGCGCGAAGGGTGGGAAAGGTGGTCAATTTTACATCGTCACGGACTCCTCAGACCATGATCCGGTGA ACCCGAAACCTGGCACGCTCCGTTACGCCGTGATTCAGAACGAGCCACTGTGGATTGTGTTCCCTAGTAACATGATGATT AAGCTTTCACAGGAGCTTATATTTAACAGCTATAAGACTATTGATGGGCGTGGAGCGGATGTGCACATTGTTGGGGGAGG CTGCATTACTTTGCAGTACATAAGTAATGTTATCATTCACAACATTCATGTCCACCACTGTCATCCCTCTGGTAAGAAAT TGAATCATTCAATGGCTTTGAATTATTTCAATCTGTCGTACACTTAGAGCAATTAATAAACAATAGAAGCTTTTGCTTTT TTGGCTTGTTTACAGCCCTTTTTGATCACTCTTGCCAATGTAGTGCAAGGGCTTTTTCTTTTGAAATGTCAATATCGAGG GTAGCTTGAGAAAAAGTTAAGCTGGTGGGGTAACACTCTTCATATAGCATTTGACTACCTCTGAACTTGAAAATGATACA ATATTTGAAAAAGTTAATATAGTGGGAAATACATTATTGAGAAAAATATACAGTATCTTGAAGGGTGATGTCATTTATAA GAACGAAAAAATATACACTACTATGTTAAACCATTTAGATAAATTAACATGTTCTTAATCCAAATTAGCTTATTTTTTGT GTGGATAAAGTTGGTTTATTTAGTTTTTTTTAGGATATTTTAATAAATATTTTAATCAATTTTAAAAAATAAAATTTTGA AATTTATTTTCTTCTTTCAACTAATAATATAAAAAAGTTATAATTCATTGATTTCATTCACACTTCCAATTCATTTCAAC TTCATTTTTTATCTACTTCTTTTTTCTTGAATTATATCACTCATATTTTCCGATGTACAAAAAAAAAAGAATTATATCTC TCATCACATCTATTTTCTTCCTCTTTGCTTCATATCTCTCCTCTTTCTCCACTTCATTGATCACATTTGTTACTTTCTTT TTCTCTTCATCTCCATTTTCTCATCCAATTTCTACTTATATGAGAGTGTAAATGAAATTTAATTCAATATCAAAAGAAGG GTCAACTTAGTATATTGGTGGGGTAAATAACCCATTCTAAGTGCCCTAGTGGTGTTTTAGATTAATGGGCTAAGAATTAT CCTCATTTTATATTTTTTTAACAGTTCCTGCAATATATTAAACGGGAGCATAGAAGTAAAAATGTCTGCGGTTATAAAAG TATTATCCTCATTTTATACTTGAACTCTTATCAATAATGCTATTGGTCTCTATCTATGATGACATATGGACCCATTTTTT TTTTAAGGAACCCATAGATAAGTTAGTAAACAAAAAAGTATACAGTAAAAGTTCTTAATCAAATTAAGGGAGAAAAATGA TTTTGAAAATGTTTCAATTGTCCTCTAAAAACCTTTTATATAAACATCATTTGGTCTTCCAATATTCAAAATATACACTA GTTAACCCAATGATTACCACGATTTATGCCCCAATAATCACAGGTAATACTAACGTGCGGTCGAGTCCAGAGCACTACGG CTACCGCACACTATCAGACGGCGACGGAATCTCCATCTTCGGATCACGCGACATATGGATCGACCACTGCACCCTCTCAC GGTGCAAAGACGGTCTAATCGACGCCGTGATGGGTTCAACCGCTATAACAATCTCCAACAACCACTTCTCCCACCACAAC GAGGTCATGCTCCTCGGCCACAGCGACCACTACACTCCCGACTCCGCCATGCAGGTCACAATCGCCTTCAACCACTTCGG CGAACAGCTCGTGCAACGCATGCCGCGGTGCAGGCTGGGTTACATCCATGTGGTGAACAATGATTTCACTCGGTGGGAGA TGTACGCGATCGGCGGCAGCGGCGGACCGACGATTAATAGTCAGGGGAATCGGTATACGGCGCCGGAGGATGGCCGGGCG AAGGAGGTGACGAAGCGGTTGGATTCTGGTGACGGCGAGTGGAGCTCGTGGAATTGGCGGTCGGAGGGGGATGTGTTGGT GAATGGAGCGTTTTTTGTGGCGTCTGGGGCGGATGGGGAGGGGAAGTATGAGAAGGCTTTTAGTGTGGACCCTAAATCGG CGGATCGGATTTCGATGCTCACCATGGCCGCCGGTGTTCTTGGTGTTGCTAGGTATCTCTATCTTAGTATCTTATCCTTT CTTTTGCTTTGCTTTTGCTTTTGCTTTTGCTTTACTTTTACGTGAAAGAGGTATGGACCTCTGTTGGGTTGAAGTACTTT CAAACTGAACACTAAAAACCCAATGAGTGGTGATTACAACGGTTAAAACTTAAAAGTGGTTGTTTGAACTTTAAGGTCGA AAGTTCAATCATTAGAAGATGCATTCTTGGGGAGATCTTTGACTTTTTAACGCATTAGCATTCCCTTGAGTAGAGGATAT CTATGGTTAAACTAAAAAAAAATCAATTAGTAAATGTGAGTTTTAACTTTTAACTTTGAGTTGGCTTTTAATTCAGTTCT CAATTACTTTTTTATCATAAAGATAGAATGGTAGGTGTTGTCCTTAAAGTGTAGGTAAAGGATTGTTTCATTTTCTCAAC AAAATATGCACTATAACTTCAATGCAACATTAGCTCTTTTTATTTGTTAAAAATTTAGGTGGGTATTAACAGATTGAGAT TTGAGAGTGATTTCATCAGAGTAGAAGTGAAACCCATATGATCTAGTGAACTTCACATATATTTTAATTCTATAAGATGA AAGGAGATAAAAGATAAATCTTCACTTCACCTAGCTATAACAGTTTATTTGGGATGAATGCATGTTAAGAATTTGACAAG TTGATATCTATCGAATCTGGAAATGAAATCTGATGTATGGGTGATGAATGAGCAGGGACAATAATCTGGGCATGTGGACC AGAGGACCCAATGATGGTGGTACTTATTTTTCAGATTTCGGCCCAGATTACACGGATGATATGTCCCAGAGTATAATGCG GTTGCCACCTTCACATACTTTGTCTCTTGTATGTGTTTTTGTTACATTGTTGTGCTTGTTTTCTCATGCAACACCCTTAA TAGTAGTTCTATAACAATGAAGAACAAGCATCTTTAATGTGGTGCTGCTTATTGACTCTATTGAATGAAGAGGGCCTGCT CCTTAAAAAGACCAGGGCATCATTAAGGCTGCTATATCATATTATATCTTCAATTTCCCTCTATTTTTTATTATTCTTTC TAATCCCTCATAGGGCTAAAAGTAATGCTATCAAGATACTCTTTTATTTGAGCCTAGTGTTTGGTAAAGCTTGAAGAGGT GGTAATATTGACTCACTCTCATACTAATTGTCTGCCTAACAACTGGGGGATCAGGCGGTCTATCAGCGGCCTAGCCTGGC CCATTTAATAAAAAGGCCAGACTCAGATTTTCTAAAAAGCTTGATTAATTAAATAGGCTAGGGTAAGGCTGTTAAAAAGC CTGTTTGGCCTTACAGGCTGGCCGATTTGAAAAAAAAATAATGCAAGCCCAGTCATACAATAAGAGTAGAGACTTTGAAA CAAAAAAAAAGGTTGAGAAAAAAAAAAAAACGTGACTCACACGACAGTAAGGTAGCGTTTGGTAACAAAAAAAGACATAA CAAAATGGAACGGGTTGGAACAGGATTGTTCGTATGTTCTATTTGGTAAATACATCACGGACATATCAGAACCATAAAGT TAGTTACACATATACCCCTGTTTAATATTTTATTAAGCTTTTAAAATTGTTTTTAACAGAATAATTATATATATATTGTA TATTATTTTTTACATATGAACTTTTTATTATTGAAAAATTGATTTGATTAAAGACATTTGAGAAGTTTAAAATTAGGCTT AAAACACTTTTGGTCGCCCACGAATGCGATGTATGCAAAATAAGTCTCTAAACTTAAAAAAGAGTATTTTTGGTCCCCAA CTTAACATTCTGTCAACAGGTTTGGTCCCTCATCGTTTTTCCGTCAATAAAGTAACGATTATGAGGACAAAAGTGTAATT AGAAAAAAATTAATTATAAAATAATATAAAAATTAACAACCCAGAAGTTGTTCTTGAGCTTCATCTTCTTCCTCTTCATA ATGACCAAATCCAACTCCCTCATCACCAGCATTCCTAAGCTTCCTCCTCATCCAGATCGGAGCCACCGCAATGCACCATT GCCGCTCTTCTGCCACCACCACTGTAACAGAAGCCACCGCAGCCAGATTTGGAAAGACGGTGGCTTCGTTGTTCAGGTCT TGAAGAGGAATGGGGATCAGCGGCGGACGGCGAGAAATGGTTTTGAATGAGATAAGGAAAGGAGAACGTTGAGGGATGTT TTGATGGGGTTGTTCGGGGAGAAGAACATGAAGAACGCGGCTTTGTCTCAGGTGTTCATACGAGGAAGGTGCGTTGGTGA GGTGGGGAAGATTCTGGAAGGGTTGCCGAGGACGAAGCCCAAGTTCGTGTGTGAGAGCTGTGGGGATATGAGGTTCGTGC CGTGTGGGAATTGCAGTGGGAGCAAGAAGGTGTTTGATGAGGACGAAGGGTTGTTGAAGAGGTGTTTGGAGTGAAATGAG AATGGTTGGCTTAAGTGTCCCAATTTTTCGTCTAATTGATTGATTGCTTGGTGTTTGTAAAATTGTCACACTGGATGTAT AATTGTTGCTGTTTTTGCAATTGCAGCTTGTTATGTGTTTTAGACTTTTAGG
CDS sequence (LotjaGi5g1v0083600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAAACAACCTGCATTTTACTCATCTCTGCAGTTGTGGGTTCGTTTTTTCCACATGGAAGAGCAATGCTGAACCT CACTCTGCCTGGTCAACATCCTGACCCTGAAGCTGTTGCCCGAGAAGTTCACTGGAAAGTGAATGCCTCACTTGCAAGGA GGGAAATGCTAGCAGTATCCGAGAAAGATGTCTCAACATCATGCCTCACAGGGAATCCCATTGATGATTGCTGGAAATGC GACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCCGACTGCGCCATCGGGTTCGGGACAGGCGCGAAGGGTGGGAAAGG TGGTCAATTTTACATCGTCACGGACTCCTCAGACCATGATCCGGTGAACCCGAAACCTGGCACGCTCCGTTACGCCGTGA TTCAGAACGAGCCACTGTGGATTGTGTTCCCTAGTAACATGATGATTAAGCTTTCACAGGAGCTTATATTTAACAGCTAT AAGACTATTGATGGGCGTGGAGCGGATGTGCACATTGTTGGGGGAGGCTGCATTACTTTGCAGTACATAAGTAATGTTAT CATTCACAACATTCATGTCCACCACTGTCATCCCTCTGGTAATACTAACGTGCGGTCGAGTCCAGAGCACTACGGCTACC GCACACTATCAGACGGCGACGGAATCTCCATCTTCGGATCACGCGACATATGGATCGACCACTGCACCCTCTCACGGTGC AAAGACGGTCTAATCGACGCCGTGATGGGTTCAACCGCTATAACAATCTCCAACAACCACTTCTCCCACCACAACGAGGT CATGCTCCTCGGCCACAGCGACCACTACACTCCCGACTCCGCCATGCAGGTCACAATCGCCTTCAACCACTTCGGCGAAC AGCTCGTGCAACGCATGCCGCGGTGCAGGCTGGGTTACATCCATGTGGTGAACAATGATTTCACTCGGTGGGAGATGTAC GCGATCGGCGGCAGCGGCGGACCGACGATTAATAGTCAGGGGAATCGGTATACGGCGCCGGAGGATGGCCGGGCGAAGGA GGTGACGAAGCGGTTGGATTCTGGTGACGGCGAGTGGAGCTCGTGGAATTGGCGGTCGGAGGGGGATGTGTTGGTGAATG GAGCGTTTTTTGTGGCGTCTGGGGCGGATGGGGAGGGGAAGTATGAGAAGGCTTTTAGTGTGGACCCTAAATCGGCGGAT CGGATTTCGATGCTCACCATGGCCGCCGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGCATGTGGACCAGAGGACC CAATGATGGTGGTACTTATTTTTCAGATTTCGGCCCAGATTACACGGATGATATGTCCCAGAGTATAATGCGGTTGCCAC CTTCACATACTTTGTCTCTTGTATGTGTTTTTGTTACATTGTTGTGCTTGTTTTCTCATGCAACACCCTTAATAGTAGTT CTATAA
Protein sequence (LotjaGi5g1v0083600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQTTCILLISAVVGSFFPHGRAMLNLTLPGQHPDPEAVAREVHWKVNASLARREMLAVSEKDVSTSCLTGNPIDDCWKC DPDWANNRQRLADCAIGFGTGAKGGKGGQFYIVTDSSDHDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSY KTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRC KDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMY AIGGSGGPTINSQGNRYTAPEDGRAKEVTKRLDSGDGEWSSWNWRSEGDVLVNGAFFVASGADGEGKYEKAFSVDPKSAD RISMLTMAAGVLGVARDNNLGMWTRGPNDGGTYFSDFGPDYTDDMSQSIMRLPPSHTLSLVCVFVTLLCLFSHATPLIVV L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 442 | 442 | 2.5E-287 | – | |
| PANTHER | 1 | 442 | 442 | 2.5E-287 | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 457 | 442 | - | – | |
| Gene3D | 71 | 413 | 343 | 2.9E-121 | ||
| SUPERFAMILY | 72 | 399 | 328 | 2.2E-97 | ||
| PRINTS | 94 | 111 | 18 | 5.0E-75 | ||
| PRINTS | 118 | 143 | 26 | 5.0E-75 | ||
| SMART | 146 | 343 | 198 | 7.6E-94 | ||
| PRINTS | 154 | 170 | 17 | 5.0E-75 | ||
| Pfam | 155 | 323 | 169 | 8.0E-20 | ||
| PRINTS | 218 | 239 | 22 | 5.0E-75 | ||
| PRINTS | 298 | 317 | 20 | 5.0E-75 | ||
| PRINTS | 320 | 339 | 20 | 5.0E-75 | ||
| PRINTS | 362 | 386 | 25 | 5.0E-75 | ||
| PRINTS | 391 | 414 | 24 | 5.0E-75 | ||
| TMHMM | 458 | 480 | 23 | - | – | |
| Phobius | 458 | 480 | 23 | - | – | |
| Phobius | 481 | 481 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0083600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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