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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0089800 |
| Transcript ID | LotjaGi5g1v0089800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein; Swiss-Prot: sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7MVE7|K7MVE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0089800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15620596..15628216) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACGGTTATCTCGTCAGTGCACACCACACTGTTTTCCAGAGCCTCTCGCTTTCGTCACAGTAATGGCCTAAGAAG CTTAACATTTTGTTTACCTTTCTCATCTTCCGCTGCTTCTGTATCTACTGATAACCTTTCACTGAAGAAATGGAGGCAGC CGGTTGTCTCATTTTTGGATCTTGGAGGAGTCAAGATTAGCATAGAAGGTATTTTGGCTGTTGCTTGTGGTTTTGTATTT TTGTTGGTTGACCTTATTTTTTCACTTACATCTGAATTATACTTTCTTGTCAATGGTATTTGAATTTATATCACATATTT TGATCTACAAAGTGAGCTTTAAAACTCAGGTTTGCATGTCTTAGAAGTTGAGTTAGGCCTAACTCTACCCGAAAAGCTAA TTTTGAGGTGAATGGTGAGGGTTGCTCTACCCTCTAGTCAATGTGAGACTTCTCAAGTCACAACACACCTTACACCCAGC GCTGAACATTTGGAGCGTGACATTTGCAGGAATGAACATCTGTGAGTGGCCATATATGGGTGGTTTCCAATAAATTGATC TAGGATAGACTTTCATACCATCTTAGAATTTGGGTTACGCCTGACTCTACCCTAAAAGCTAGCATAGAGGTGAGGGTTGT TCTACCCTTTATAATCACTTATTTGGCCATATTTCTAGTCAATGTGAGACTTCTCAACAGTATGCACTAAAAGATTCCAA TTTATGTTTTCCCCATAGTTTTGAATCATTTGCAACTGACAAATGTCTTTTACAACCACAAATTGTGTTAATCCTTAAAG TAAATATCCATGACTTTGACCCCTTTGCTTACTTTGTGCAAGTGAATGACATTGAAGTTATTTTATTGAAGTTCACATTT GGATGTAATTGTCATGGCTAAAGTGTTTGGGATGTTATGAGCATTGTAAGACACTATGAATTGCTTTATTCGTTCTACTT TTCTTACTCTGTATGTGCCTTTATGTTTGCTGTTTTGCTTCATGTTAATGTTTTATTTTAAACTGTTATTTGGTTCATCA AATTCTTATTATTTTTGCTCCATGGTCTCCTAGATGTAGTGAGGGACGATCCAACAAATAATGTGCCGGACAATATATTT ACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATTTTGA CACAAATTATTCAGATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTCAGTGAAGCAGGTATGGCAAAATGTGT TGAAGAATTAGTTTCCCTTAGCTTCTATATGATCCAATATTAGCAACTATTGTTATATGTCGCATATGTTTATACTCTGT TTGCTACTTCTATCCTTCTAGATTTGTGCTGATTGTTATAATGAGTATTGCATGCATTTGAAGCACCTTATTTGTCATGG ATGTTATTTGAGAAAATTGCACAATGATCTTCATCTGCAGGTGTAATTTCTGCTCTCTTTTTTTCAATATTCTGTATAAA CTTTTTAGTTTAAAATCTTACAAAGCCATTAAAAATAAGTGATATTAATGTTTTCATGAATTTATTTCATGTATTTCATA CGTTTACCCCAGTGATATTATAATTTGATTTCTTTGACCTGAACATGTAAAGTTGATAAGTTATAAAAACAATACTTTTA CTTTGGGATTTAAGGGATGGTATAAGTATAGGAGATTAATTGATTGACCCAATATTTTTTCCTGGTTTTAATCCAAGGCT TGGGTTAAAACTTGTTTCGATTTCTATTCGGGTGCCTTCTTGGTGGCTTTTGATCAAATGGTGTCATTCTTCAGTCTATT GGTGCTGCTTTTAATGAAATGATTTCATTCTTCAGTCTTTTCTTTTATATGAGTTGCTTTTCATCAAGTGACTTCTTTGG TCCTCTCCTTTCCGAAAGTTGAGTAAAACAAAAGAAAAAGGGAAAAATATTTTATGTTATTAAAAAGGGATGATTATAGT TTGTGCACGATACATATATTAAAAGGAACTCTATCAGTGATAGCATCTCAATAACTGTTGATTTCTAACAATAATACAAA TAAAACTCGATATGATTGATAAAGTATTATTTTTGTTTTAACAACACATCAACAAAATATTGTTATGCATTAACTAGATT TGGCTGGTAGAAGTTTATGTTTCACAATCTTAAAAACTAGTATGATTGATTATTGAAACCTGAGGTATGAATACTACTAT GTTTTGCTGGTGTTACATTTTCGACATTATAAGTGGAGTGAGTCTGTGAATGTGTCTCTGAAGCTCTGCTAACCTGTAAC TATTGTTGTGATCCCTTTCATTTTGATTTATTAGTCTTGCATATTGCATCCTTTTTGTTGATAAGGTAGTTTAAACTTCA CAATAGGGCTTCTTTATGATAATCTTCATGCTGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTCAGCAGGAG CTATAATGATACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAAAA ATGGAAATACCCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCATTATCCTGTCTTTCAT CAGGTATGCCCCTATGCAGTAACTAATGTTTTCTACTGATTAACTTTATGTAATTTCCTTTTTTTTATTATGCAGATGGA AGGTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCACATCATTTGCCGCAGCAGACCTAAAGA AATGCCTTGAGGGTCTAGCATGCCATTTATTTGGTATTTCCAATTGCCAACATACACGTCTTTATCAGTTGCTGCAATTT AATAATTTAATGGTCTTGAGTTCAATTGTGGAAACATCCTTTCTGCTTACAAGGGTAAAGCTGCATACATCTAACCTTCC CCTGACCGTAAAATGGTGGGAGCCTCAATGCCTCATGTACTAGGCTACCTTTCTATATAACAGTGTAGTTGTTCCTAAGT AAATAATAAAAAGACACAATTGTATACAAGACAATATCAACAATCATGCGCATATGATAGAAAAAAGGCCTCTTTATGCA TATCAAGCAATGCTCACAGGTTAAAAGAAAATTATAATGAAATGGAAATTATCACTGCATAATTCTTGAGTATAAAAACC TGTAAGTAGGAAAGTGGACAACTGGACATTTTATGTACTTTGTGGTGATCGTCTCATTGTAATGCTTAAATGGTTTCTTT ACTCAAGTTGTCTAGTTATGAATTTGAGATATTCTTCTGGAACAAAGTATAATGTCCAAGATGTGGATATTCTTTTCTAT TTATAATCTTTTGCATTGTACTTTAGGTGCTGTGGAAATGCGTTGGGTGGATACCTATTTTCCGTTTACTAATCCATCAT TTGAGCTTGAAATATATTTCAAGGTATACTATGTTCATTATTGTTTCTTAAATGAAACATGTTCTCATAGTTCCTGTCAC TGGTTTTTCCATGTTCTATTATTGTCATTCTATTTTAGTGAAATTAAGTAATGTTTTATATATCATTTATTTCAGGAGAA GTGGATGGAGGTTTTCGGGTGTGGAGTGACAGAGCAAGAGATTTTGAAAAGAAATGGGAAACCTAATAATGTTGCTTGGG CTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATACCAGACATCCGTCTCTTTTGGTCAAATGATGAG AGATTTACCTCTCAGGTATTTCGTGGATATGTTTAACAAACACCTTCAATAATTTGTCGCTTTTTCCTGGTTGGCAAGAT GTTATTATATGGAACTATGGAAGTATGATTTAATCATCTTGAGAATCAAAGTGTTATGCCATAAGTTTCATTCTTTTCTG ATCTCTTATGTCTGATATGTGTTTTCTTAATTATTTTATTTACAGTTCTCCAAGGGTCAGTTGGGAGTTAAATTTAAGCC ATTTTCAAAGGTAACTTCCACATGTGCTTCTATGTGTCTACCCGTGGGTTTCTACATTCATTGTCATTGCACTGAGTTGT TCATGGTTAGGAATATTTTTTATTCTTTAGAATATTTACTACAATTTAAAACTGCATATAAATTATCCATGATTGTGAAA CTTAAGATAGTCCACACAATTTGTTATGCAAAACTCTTCATATTTTTCATGTTGTTTTAGTGAGTTTTTTTCTGTCTACA TAGCAAGTTACGCTCGCTAAACTTAGAGATATTTATGCCCATGGATTTGATACTTCACTATGTTAAAGTCCTTGTCACGA TCTAGTTCAGAATTTCAGATACCATAGTTATTTTAAACTAATAAATTTATATTATATTATCTGCATTTTGGTTTCATTCT TGTCAAATGATACTCATCTACTAATATGTAATGCCGAAGCAAAGGGCATGTAACTAAGCAATCTTACTAGCCCTTTTTTA TGCACAGTCCTTGTGGGATTGTGTTCCTATGTCTGACTGTCTTGTTATTAACCATGGGGAGTTTATGTTAACTTTATAAT TTATATTATTCTCTCTGCTTTGCAGTTTCCTCCCTGCTACAAGGACATCAGTTTCTGGATCAATGAATCATTTACTGAAA ACAATCTGTGTGAAGTTGTCATAGGAATAGCCGGGGATCTTGCAGAGGAGGTACATGATACACATTTGATTAATTTGAGC ATAATTTTCTCTGGCATATTAATTATATTTCTGTAAGTTCTCAAATTAGCTGCTTTCATGATGTTCAATGGAAACTTTAT GCATGATTCGGGACTATGGATTGGGGTGACAATATTCTCAGACGCTGCAGCTTTGGTTTCTTTAATATTTCAAAAAAAAA AGCTTTGGTTTCTTTAAAAATCATACAAGCATCAAACACAAATTATAAACCTACTAGAATAATTCAACCAGTAGCTTAAG TCATCATTTGCCAACAGTATTCTTATCCGCTTAAATTTAATTGGTAAAAGCAAACCTCGGGAATAAGTTGCTAAACTAAA CAAAAGACTAAAACTAGCCTTTGCAACTTGATCTTGATGGAAAATAACATATATCTTGATGAATTGTAAATAGGCGTGCT TGATCTCATTGATCTGTAAAATACATTCCTATCATCTCAAATGAAGCGATCAAATTCTTGAGTTAGCAGCAATTGTTGTT TGTAGACTAGTGTTTTTAGAGGCTTTGATACCTTGTTTGCAAATAGCTCCTTGTGCCTAATAAATTTGTGGAGAAATAGT TTTTGGCTGCTTGTTCTCATAATAGAATATAAAACTCCTGAGTCTCTTATTTGAATAATTAAAAGGCTTAATTGCAACTT TAGTCCCTGACGTTTATCAAAACCACGATTTTAGTCCCTCACCTAATTTAATTACAAGAATAGTCCTTCACGTTCCCTCC TCTTTGCAACGTTAGTCCTCCTGTCTAATTGTTAACGGAGAAGGCTTATGTGGCAACGCACGTGCCTCTCATGTGACCAA GAAAAACGATTTAATTGCAATTTTGGTCCTTGACTTATACGCATTATGTAGTTTTGGTCCTTAAAGTTGAAAAATTGCAT TCAAATTTATATAAAAACAAAAAAAAAAACCAGTATTCATATTCTTCAAATTTAATTACATATTTAGTAAATCATAATCA GACATCATTTATAAATTTTAATTTTAAATAATTAAAAACATATGTATTGATTTGTTTATACTTTATAGAATAATAAAAAT ATATTTAATCAATACATTTAACTTAATATAAAAGATATCTGAAAAAAATATGGAGGATAATATATAAATACTTTCAATTT TAATTAAATTGGATAGAAAGAGAAAAAATTATGATTGTTATCAAAACATTACTGAATAAGAATTTAAATAAGTATTTTAT AAAATCATAATCAGGCATAGTAAAATAAATTTTAATTTGAGTAGAATTTTTGAAGATGAATAGTTATCATTTTCTATTTC TTTATTGTTTTTTTATTAATTTATATGCAATTTTTGAACTTTAAGGACCAAAACTACACAATGTGTATAAGTAGGGGACT AAAAGTGCAGTTAAATCATTTTTCTTGGTCACATGAGTGGCATGTGCGTTGCCACATAAGCCTTCTCTGTTAAAAATTGG ACGGAAGGACTAACGTTGCAAACAAGAGGGAACGTGAGGGACTATTCTTGTAATTAAATTAGGTGAGGGACTAAAATCAT GGTTTTAGTAAACGTCAGGGACTAAAGTTGCAATTAAGCCTAATTAAAATTGGCTTCAAACTTACATTTCAGGATGGTAC ATTGGTACATCATAAAGAACTTAGACTAGAAAATTTTGGGAGTAAGGGCGGTTGTTTAGCAGGAAACTATTTAATATATT TCTCTCTGCTATTGCTAGTGTTCTTTCTGTGCTTAATTTAGAGCAAGTTGTGGTAGTAAGATATGGATGCAGCCATGTAG AAAGAGAATATTGTTTTAGTAAAGAATGGGAATGGTTTGGACTTGAGTTTATATTAAATAAGACAGGGGTAGTCTCCTCA AAGTTAATGTATAATACGGTATTACGGTATAGTGAAGCTAATGTGCATAGTATCTTCCATGTACAATATTAACATACTTC CTCTAGTTGGAGCACCATAGATGTTGCATGCAACAAGTTTGCTCTGATAGCTTCAATCTGGGTTATCTGAGATGAATAGT AATTATGCCTGCTAGTTGGTCATTTGAGTTAGCAATGCACCCTGAAAGGATTGTAAGTGGCAGAAATTCGATGAGTTTGG TCCTCTCATTATTTAAAGTGATTAGAGACTGCATGCATGGCAGCTTGACTATCAAAAAGTAGCTTCATTCATCAAGGCCA TAGTTTGAATTGGTCTAGCAGGGATTTTTTGCTCTTTCTCTTTCAAGAGATGATGTTGTCTCCAATCAGAATGCAATATC ATAGAGCATCTCTTTGTAGTAGAATTTCTCCCATCAGCATTACCATAACCAGTCCCCTGTTTCTTGAAATCACAGGTGCA ACTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTACAGGATTGCATATAGGTCCATGGAACGTTCTC TAACTGATGATGAAATTAATGATCTGCAGGTATTAAATATAATTATAAATATCGGACACAAGTCTTGGTTTGAAGTTGTC ATATTTTGTTTCCTAAGCTATAACATAGTAACATTATTTTCCTTGTCAATGCAGTGGAAAGTAAGAGAACAGGTGCAGAG CAAATTGGAAGTTGTCATAAGATGAGCTTTACTGTGCTAAAGCTATACAGCTTTGCTGTAATTTTTGTTCTCATTTTTTT TGTACAGATGTTTTATCTCCCCCAACAGCAACTGAATGACTCAATGGATAGATTTATTATTTATTTTCTCTTGGTGAAAA TACACTATATGGTTGTATCTTCTGAATTTCTGATTTTCCACAAGAACATAACATTTCTGAGGAAAATAAGCATAACTGCT GACTGCTGTAGTGTAAAATCGGTGGACTCCTTCACGTAATGGTAGGCCCTCAACAATAAAATTGAGTAACAAATGGCTTG TGGACGATTTTATATTTCAGA
CDS sequence (LotjaGi5g1v0089800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGACGATCCAACAAATAATGTGCCGGACAATATATTTACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACA CCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATTTTGACACAAATTATTCAGATAAGTTCAATAAGTTCGATGATC TTTGTCCTCTTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTCAGCAGGAGCTATAATGAT ACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAAAAATGGAAATAC CCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCATTATCCTGTCTTTCATCAGATGGAAG GTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCACATCATTTGCCGCAGCAGACCTAAAGAAA TGCCTTGAGGGTCTAGCATGCCATTTATTTGGTGCTGTGGAAATGCGTTGGGTGGATACCTATTTTCCGTTTACTAATCC ATCATTTGAGCTTGAAATATATTTCAAGGAGAAGTGGATGGAGGTTTTCGGGTGTGGAGTGACAGAGCAAGAGATTTTGA AAAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATA CCAGACATCCGTCTCTTTTGGTCAAATGATGAGAGATTTACCTCTCAGTTCTCCAAGGGTCAGTTGGGAGTTAAATTTAA GCCATTTTCAAAGTTTCCTCCCTGCTACAAGGACATCAGTTTCTGGATCAATGAATCATTTACTGAAAACAATCTGTGTG AAGTTGTCATAGGAATAGCCGGGGATCTTGCAGAGGAGGTGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACC AGCCACTGCTACAGGATTGCATATAGGTCCATGGAACGTTCTCTAACTGATGATGAAATTAATGATCTGCAGTGGAAAGT AAGAGAACAGGTGCAGAGCAAATTGGAAGTTGTCATAAGATGA
Protein sequence (LotjaGi5g1v0089800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDDPTNNVPDNIFTKLGMQLHRRDQHPLGILKNAIYEYFDTNYSDKFNKFDDLCPLVSVKQNFDDVLVPEDHVSRSYND TYYVDPQTVLRCHTSAHQAELLKNGNTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPDEWEASGMDGTSFAAADLKK CLEGLACHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWMEVFGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDI PDIRLFWSNDERFTSQFSKGQLGVKFKPFSKFPPCYKDISFWINESFTENNLCEVVIGIAGDLAEEVQLIDNFTNKKGMT SHCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 148 | 148 | 3.5E-53 | – | |
| PANTHER | 3 | 360 | 358 | 2.9E-184 | ||
| PANTHER | 3 | 360 | 358 | 2.9E-184 | – | |
| SUPERFAMILY | 15 | 257 | 243 | 7.24E-54 | – | |
| CDD | 27 | 252 | 226 | 1.13607E-91 | – | |
| Pfam | 47 | 257 | 211 | 1.9E-48 | ||
| ProSiteProfiles | 113 | 268 | 156 | 12.558 | ||
| Gene3D | 149 | 266 | 118 | 4.1E-50 | – | |
| SUPERFAMILY | 265 | 360 | 96 | 2.75E-27 | ||
| Gene3D | 267 | 360 | 94 | 1.8E-33 | ||
| Pfam | 270 | 360 | 91 | 3.3E-23 | ||
| ProSiteProfiles | 270 | 360 | 91 | 22.953 | ||
| SMART | 270 | 360 | 91 | 7.4E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Phenylalanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi5g1v0089800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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