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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0089800 |
| Transcript ID | LotjaGi5g1v0089800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein; Swiss-Prot: sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A1J7HX04|A0A1J7HX04_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0089800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15620912..15627180) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAATTCTTATTATTTTTGCTCCATGGTCTCCTAGATGTAGTGAGGGACGATCCAACAAATAATGTGCCGGACAATAT ATTTACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATT TTGACACAAATTATTCAGATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTCAGTGAAGCAGGTATGGCAAAAT GTGTTGAAGAATTAGTTTCCCTTAGCTTCTATATGATCCAATATTAGCAACTATTGTTATATGTCGCATATGTTTATACT CTGTTTGCTACTTCTATCCTTCTAGATTTGTGCTGATTGTTATAATGAGTATTGCATGCATTTGAAGCACCTTATTTGTC ATGGATGTTATTTGAGAAAATTGCACAATGATCTTCATCTGCAGGTGTAATTTCTGCTCTCTTTTTTTCAATATTCTGTA TAAACTTTTTAGTTTAAAATCTTACAAAGCCATTAAAAATAAGTGATATTAATGTTTTCATGAATTTATTTCATGTATTT CATACGTTTACCCCAGTGATATTATAATTTGATTTCTTTGACCTGAACATGTAAAGTTGATAAGTTATAAAAACAATACT TTTACTTTGGGATTTAAGGGATGGTATAAGTATAGGAGATTAATTGATTGACCCAATATTTTTTCCTGGTTTTAATCCAA GGCTTGGGTTAAAACTTGTTTCGATTTCTATTCGGGTGCCTTCTTGGTGGCTTTTGATCAAATGGTGTCATTCTTCAGTC TATTGGTGCTGCTTTTAATGAAATGATTTCATTCTTCAGTCTTTTCTTTTATATGAGTTGCTTTTCATCAAGTGACTTCT TTGGTCCTCTCCTTTCCGAAAGTTGAGTAAAACAAAAGAAAAAGGGAAAAATATTTTATGTTATTAAAAAGGGATGATTA TAGTTTGTGCACGATACATATATTAAAAGGAACTCTATCAGTGATAGCATCTCAATAACTGTTGATTTCTAACAATAATA CAAATAAAACTCGATATGATTGATAAAGTATTATTTTTGTTTTAACAACACATCAACAAAATATTGTTATGCATTAACTA GATTTGGCTGGTAGAAGTTTATGTTTCACAATCTTAAAAACTAGTATGATTGATTATTGAAACCTGAGGTATGAATACTA CTATGTTTTGCTGGTGTTACATTTTCGACATTATAAGTGGAGTGAGTCTGTGAATGTGTCTCTGAAGCTCTGCTAACCTG TAACTATTGTTGTGATCCCTTTCATTTTGATTTATTAGTCTTGCATATTGCATCCTTTTTGTTGATAAGGTAGTTTAAAC TTCACAATAGGGCTTCTTTATGATAATCTTCATGCTGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTCAGCA GGAGCTATAATGATACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTG AAAAATGGAAATACCCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCATTATCCTGTCTT TCATCAGGTATGCCCCTATGCAGTAACTAATGTTTTCTACTGATTAACTTTATGTAATTTCCTTTTTTTTATTATGCAGA TGGAAGGTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCACATCATTTGCCGCAGCAGACCTA AAGAAATGCCTTGAGGGTCTAGCATGCCATTTATTTGGTATTTCCAATTGCCAACATACACGTCTTTATCAGTTGCTGCA ATTTAATAATTTAATGGTCTTGAGTTCAATTGTGGAAACATCCTTTCTGCTTACAAGGGTAAAGCTGCATACATCTAACC TTCCCCTGACCGTAAAATGGTGGGAGCCTCAATGCCTCATGTACTAGGCTACCTTTCTATATAACAGTGTAGTTGTTCCT AAGTAAATAATAAAAAGACACAATTGTATACAAGACAATATCAACAATCATGCGCATATGATAGAAAAAAGGCCTCTTTA TGCATATCAAGCAATGCTCACAGGTTAAAAGAAAATTATAATGAAATGGAAATTATCACTGCATAATTCTTGAGTATAAA AACCTGTAAGTAGGAAAGTGGACAACTGGACATTTTATGTACTTTGTGGTGATCGTCTCATTGTAATGCTTAAATGGTTT CTTTACTCAAGTTGTCTAGTTATGAATTTGAGATATTCTTCTGGAACAAAGTATAATGTCCAAGATGTGGATATTCTTTT CTATTTATAATCTTTTGCATTGTACTTTAGGTGCTGTGGAAATGCGTTGGGTGGATACCTATTTTCCGTTTACTAATCCA TCATTTGAGCTTGAAATATATTTCAAGGTATACTATGTTCATTATTGTTTCTTAAATGAAACATGTTCTCATAGTTCCTG TCACTGGTTTTTCCATGTTCTATTATTGTCATTCTATTTTAGTGAAATTAAGTAATGTTTTATATATCATTTATTTCAGG AGAAGTGGATGGAGGTTTTCGGGTGTGGAGTGACAGAGCAAGAGATTTTGAAAAGAAATGGGAAACCTAATAATGTTGCT TGGGCTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATACCAGACATCCGTCTCTTTTGGTCAAATGA TGAGAGATTTACCTCTCAGGTATTTCGTGGATATGTTTAACAAACACCTTCAATAATTTGTCGCTTTTTCCTGGTTGGCA AGATGTTATTATATGGAACTATGGAAGTATGATTTAATCATCTTGAGAATCAAAGTGTTATGCCATAAGTTTCATTCTTT TCTGATCTCTTATGTCTGATATGTGTTTTCTTAATTATTTTATTTACAGTTCTCCAAGGGTCAGTTGGGAGTTAAATTTA AGCCATTTTCAAAGGTAACTTCCACATGTGCTTCTATGTGTCTACCCGTGGGTTTCTACATTCATTGTCATTGCACTGAG TTGTTCATGGTTAGGAATATTTTTTATTCTTTAGAATATTTACTACAATTTAAAACTGCATATAAATTATCCATGATTGT GAAACTTAAGATAGTCCACACAATTTGTTATGCAAAACTCTTCATATTTTTCATGTTGTTTTAGTGAGTTTTTTTCTGTC TACATAGCAAGTTACGCTCGCTAAACTTAGAGATATTTATGCCCATGGATTTGATACTTCACTATGTTAAAGTCCTTGTC ACGATCTAGTTCAGAATTTCAGATACCATAGTTATTTTAAACTAATAAATTTATATTATATTATCTGCATTTTGGTTTCA TTCTTGTCAAATGATACTCATCTACTAATATGTAATGCCGAAGCAAAGGGCATGTAACTAAGCAATCTTACTAGCCCTTT TTTATGCACAGTCCTTGTGGGATTGTGTTCCTATGTCTGACTGTCTTGTTATTAACCATGGGGAGTTTATGTTAACTTTA TAATTTATATTATTCTCTCTGCTTTGCAGTTTCCTCCCTGCTACAAGGACATCAGTTTCTGGATCAATGAATCATTTACT GAAAACAATCTGTGTGAAGTTGTCATAGGAATAGCCGGGGATCTTGCAGAGGAGGTACATGATACACATTTGATTAATTT GAGCATAATTTTCTCTGGCATATTAATTATATTTCTGTAAGTTCTCAAATTAGCTGCTTTCATGATGTTCAATGGAAACT TTATGCATGATTCGGGACTATGGATTGGGGTGACAATATTCTCAGACGCTGCAGCTTTGGTTTCTTTAATATTTCAAAAA AAAAAGCTTTGGTTTCTTTAAAAATCATACAAGCATCAAACACAAATTATAAACCTACTAGAATAATTCAACCAGTAGCT TAAGTCATCATTTGCCAACAGTATTCTTATCCGCTTAAATTTAATTGGTAAAAGCAAACCTCGGGAATAAGTTGCTAAAC TAAACAAAAGACTAAAACTAGCCTTTGCAACTTGATCTTGATGGAAAATAACATATATCTTGATGAATTGTAAATAGGCG TGCTTGATCTCATTGATCTGTAAAATACATTCCTATCATCTCAAATGAAGCGATCAAATTCTTGAGTTAGCAGCAATTGT TGTTTGTAGACTAGTGTTTTTAGAGGCTTTGATACCTTGTTTGCAAATAGCTCCTTGTGCCTAATAAATTTGTGGAGAAA TAGTTTTTGGCTGCTTGTTCTCATAATAGAATATAAAACTCCTGAGTCTCTTATTTGAATAATTAAAAGGCTTAATTGCA ACTTTAGTCCCTGACGTTTATCAAAACCACGATTTTAGTCCCTCACCTAATTTAATTACAAGAATAGTCCTTCACGTTCC CTCCTCTTTGCAACGTTAGTCCTCCTGTCTAATTGTTAACGGAGAAGGCTTATGTGGCAACGCACGTGCCTCTCATGTGA CCAAGAAAAACGATTTAATTGCAATTTTGGTCCTTGACTTATACGCATTATGTAGTTTTGGTCCTTAAAGTTGAAAAATT GCATTCAAATTTATATAAAAACAAAAAAAAAAACCAGTATTCATATTCTTCAAATTTAATTACATATTTAGTAAATCATA ATCAGACATCATTTATAAATTTTAATTTTAAATAATTAAAAACATATGTATTGATTTGTTTATACTTTATAGAATAATAA AAATATATTTAATCAATACATTTAACTTAATATAAAAGATATCTGAAAAAAATATGGAGGATAATATATAAATACTTTCA ATTTTAATTAAATTGGATAGAAAGAGAAAAAATTATGATTGTTATCAAAACATTACTGAATAAGAATTTAAATAAGTATT TTATAAAATCATAATCAGGCATAGTAAAATAAATTTTAATTTGAGTAGAATTTTTGAAGATGAATAGTTATCATTTTCTA TTTCTTTATTGTTTTTTTATTAATTTATATGCAATTTTTGAACTTTAAGGACCAAAACTACACAATGTGTATAAGTAGGG GACTAAAAGTGCAGTTAAATCATTTTTCTTGGTCACATGAGTGGCATGTGCGTTGCCACATAAGCCTTCTCTGTTAAAAA TTGGACGGAAGGACTAACGTTGCAAACAAGAGGGAACGTGAGGGACTATTCTTGTAATTAAATTAGGTGAGGGACTAAAA TCATGGTTTTAGTAAACGTCAGGGACTAAAGTTGCAATTAAGCCTAATTAAAATTGGCTTCAAACTTACATTTCAGGATG GTACATTGGTACATCATAAAGAACTTAGACTAGAAAATTTTGGGAGTAAGGGCGGTTGTTTAGCAGGAAACTATTTAATA TATTTCTCTCTGCTATTGCTAGTGTTCTTTCTGTGCTTAATTTAGAGCAAGTTGTGGTAGTAAGATATGGATGCAGCCAT GTAGAAAGAGAATATTGTTTTAGTAAAGAATGGGAATGGTTTGGACTTGAGTTTATATTAAATAAGACAGGGGTAGTCTC CTCAAAGTTAATGTATAATACGGTATTACGGTATAGTGAAGCTAATGTGCATAGTATCTTCCATGTACAATATTAACATA CTTCCTCTAGTTGGAGCACCATAGATGTTGCATGCAACAAGTTTGCTCTGATAGCTTCAATCTGGGTTATCTGAGATGAA TAGTAATTATGCCTGCTAGTTGGTCATTTGAGTTAGCAATGCACCCTGAAAGGATTGTAAGTGGCAGAAATTCGATGAGT TTGGTCCTCTCATTATTTAAAGTGATTAGAGACTGCATGCATGGCAGCTTGACTATCAAAAAGTAGCTTCATTCATCAAG GCCATAGTTTGAATTGGTCTAGCAGGGATTTTTTGCTCTTTCTCTTTCAAGAGATGATGTTGTCTCCAATCAGAATGCAA TATCATAGAGCATCTCTTTGTAGTAGAATTTCTCCCATCAGCATTACCATAACCAGTCCCCTGTTTCTTGAAATCACAGG TGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTACAGGATTGCATATAGGTCCATGGAACGT TCTCTAACTGATGATGAAATTAATGATCTGCAGGTATTAAATATAATTATAAATATCGGACACAAGTCTTGGTTTGAAGT TGTCATATTTTGTTTCCTAAGCTATAACATAGTAACATTATTTTCCTTGTCAATGCAGTGGAAAGTAAGAGAACAGGTGC AGAGCAAATTGGAAGTTGTCATAAGATGA
CDS sequence (LotjaGi5g1v0089800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATTTTGACACAAATTATTC AGATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAG ACCATGTCAGCAGGAGCTATAATGATACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAG GCAGAATTATTGAAAAATGGAAATACCCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCA TTATCCTGTCTTTCATCAGATGGAAGGTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCACAT CATTTGCCGCAGCAGACCTAAAGAAATGCCTTGAGGGTCTAGCATGCCATTTATTTGGTGCTGTGGAAATGCGTTGGGTG GATACCTATTTTCCGTTTACTAATCCATCATTTGAGCTTGAAATATATTTCAAGGAGAAGTGGATGGAGGTTTTCGGGTG TGGAGTGACAGAGCAAGAGATTTTGAAAAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTCGGCCTAGGGTTGGAGA GATTAGCTATGGTTCTTTTTGACATACCAGACATCCGTCTCTTTTGGTCAAATGATGAGAGATTTACCTCTCAGTTCTCC AAGGGTCAGTTGGGAGTTAAATTTAAGCCATTTTCAAAGTTTCCTCCCTGCTACAAGGACATCAGTTTCTGGATCAATGA ATCATTTACTGAAAACAATCTGTGTGAAGTTGTCATAGGAATAGCCGGGGATCTTGCAGAGGAGGTGCAACTAATAGACA ATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTACAGGATTGCATATAGGTCCATGGAACGTTCTCTAACTGATGAT GAAATTAATGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGGAAGTTGTCATAAGATGA
Protein sequence (LotjaGi5g1v0089800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLHRRDQHPLGILKNAIYEYFDTNYSDKFNKFDDLCPLVSVKQNFDDVLVPEDHVSRSYNDTYYVDPQTVLRCHTSAHQ AELLKNGNTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPDEWEASGMDGTSFAAADLKKCLEGLACHLFGAVEMRWV DTYFPFTNPSFELEIYFKEKWMEVFGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDIPDIRLFWSNDERFTSQFS KGQLGVKFKPFSKFPPCYKDISFWINESFTENNLCEVVIGIAGDLAEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDD EINDLQWKVREQVQSKLEVVIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 342 | 342 | 6.2E-177 | ||
| Gene3D | 1 | 132 | 132 | 2.2E-48 | – | |
| PANTHER | 1 | 342 | 342 | 6.2E-177 | – | |
| SUPERFAMILY | 3 | 239 | 237 | 2.49E-53 | – | |
| CDD | 9 | 234 | 226 | 5.65801E-92 | – | |
| Pfam | 38 | 239 | 202 | 2.2E-48 | ||
| ProSiteProfiles | 95 | 250 | 156 | 12.558 | ||
| Gene3D | 133 | 248 | 116 | 4.2E-50 | – | |
| SUPERFAMILY | 247 | 342 | 96 | 2.48E-27 | ||
| Gene3D | 249 | 342 | 94 | 1.7E-33 | ||
| Pfam | 252 | 342 | 91 | 3.0E-23 | ||
| ProSiteProfiles | 252 | 342 | 91 | 22.953 | ||
| SMART | 252 | 342 | 91 | 7.4E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Phenylalanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi5g1v0089800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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