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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0089800 |
| Transcript ID | LotjaGi5g1v0089800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein; Swiss-Prot: sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7MVE7|K7MVE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0089800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15620912..15627442) extracted from Lotus japonicus Gifu genome v1.2.
ACCACAAATTGTGTTAATCCTTAAAGTAAATATCCATGACTTTGACCCCTTTGCTTACTTTGTGCAAGTGAATGACATTG AAGTTATTTTATTGAAGTTCACATTTGGATGTAATTGTCATGGCTAAAGTGTTTGGGATGTTATGAGCATTGTAAGACAC TATGAATTGCTTTATTCGTTCTACTTTTCTTACTCTGTATGTGCCTTTATGTTTGCTGTTTTGCTTCATGTTAATGTTTT ATTTTAAACTGTTATTTGGTTCATCAAATTCTTATTATTTTTGCTCCATGGTCTCCTAGATGTAGTGAGGGACGATCCAA CAAATAATGTGCCGGACAATATATTTACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTG AAGAATGCAATATATGAGTATTTTGACACAAATTATTCAGATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTC AGTGAAGCAGGTATGGCAAAATGTGTTGAAGAATTAGTTTCCCTTAGCTTCTATATGATCCAATATTAGCAACTATTGTT ATATGTCGCATATGTTTATACTCTGTTTGCTACTTCTATCCTTCTAGATTTGTGCTGATTGTTATAATGAGTATTGCATG CATTTGAAGCACCTTATTTGTCATGGATGTTATTTGAGAAAATTGCACAATGATCTTCATCTGCAGGTGTAATTTCTGCT CTCTTTTTTTCAATATTCTGTATAAACTTTTTAGTTTAAAATCTTACAAAGCCATTAAAAATAAGTGATATTAATGTTTT CATGAATTTATTTCATGTATTTCATACGTTTACCCCAGTGATATTATAATTTGATTTCTTTGACCTGAACATGTAAAGTT GATAAGTTATAAAAACAATACTTTTACTTTGGGATTTAAGGGATGGTATAAGTATAGGAGATTAATTGATTGACCCAATA TTTTTTCCTGGTTTTAATCCAAGGCTTGGGTTAAAACTTGTTTCGATTTCTATTCGGGTGCCTTCTTGGTGGCTTTTGAT CAAATGGTGTCATTCTTCAGTCTATTGGTGCTGCTTTTAATGAAATGATTTCATTCTTCAGTCTTTTCTTTTATATGAGT TGCTTTTCATCAAGTGACTTCTTTGGTCCTCTCCTTTCCGAAAGTTGAGTAAAACAAAAGAAAAAGGGAAAAATATTTTA TGTTATTAAAAAGGGATGATTATAGTTTGTGCACGATACATATATTAAAAGGAACTCTATCAGTGATAGCATCTCAATAA CTGTTGATTTCTAACAATAATACAAATAAAACTCGATATGATTGATAAAGTATTATTTTTGTTTTAACAACACATCAACA AAATATTGTTATGCATTAACTAGATTTGGCTGGTAGAAGTTTATGTTTCACAATCTTAAAAACTAGTATGATTGATTATT GAAACCTGAGGTATGAATACTACTATGTTTTGCTGGTGTTACATTTTCGACATTATAAGTGGAGTGAGTCTGTGAATGTG TCTCTGAAGCTCTGCTAACCTGTAACTATTGTTGTGATCCCTTTCATTTTGATTTATTAGTCTTGCATATTGCATCCTTT TTGTTGATAAGGTAGTTTAAACTTCACAATAGGGCTTCTTTATGATAATCTTCATGCTGCAGAATTTTGATGATGTCTTG GTTCCTGAAGACCATGTCAGCAGGAGCTATAATGATACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAG TGCTCATCAGGCAGAATTATTGAAAAATGGAAATACCCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTG ATTCTACTCATTATCCTGTCTTTCATCAGGTATGCCCCTATGCAGTAACTAATGTTTTCTACTGATTAACTTTATGTAAT TTCCTTTTTTTTATTATGCAGATGGAAGGTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCAC ATCATTTGCCGCAGCAGACCTAAAGAAATGCCTTGAGGGTCTAGCATGCCATTTATTTGGTATTTCCAATTGCCAACATA CACGTCTTTATCAGTTGCTGCAATTTAATAATTTAATGGTCTTGAGTTCAATTGTGGAAACATCCTTTCTGCTTACAAGG GTAAAGCTGCATACATCTAACCTTCCCCTGACCGTAAAATGGTGGGAGCCTCAATGCCTCATGTACTAGGCTACCTTTCT ATATAACAGTGTAGTTGTTCCTAAGTAAATAATAAAAAGACACAATTGTATACAAGACAATATCAACAATCATGCGCATA TGATAGAAAAAAGGCCTCTTTATGCATATCAAGCAATGCTCACAGGTTAAAAGAAAATTATAATGAAATGGAAATTATCA CTGCATAATTCTTGAGTATAAAAACCTGTAAGTAGGAAAGTGGACAACTGGACATTTTATGTACTTTGTGGTGATCGTCT CATTGTAATGCTTAAATGGTTTCTTTACTCAAGTTGTCTAGTTATGAATTTGAGATATTCTTCTGGAACAAAGTATAATG TCCAAGATGTGGATATTCTTTTCTATTTATAATCTTTTGCATTGTACTTTAGGTGCTGTGGAAATGCGTTGGGTGGATAC CTATTTTCCGTTTACTAATCCATCATTTGAGCTTGAAATATATTTCAAGGTATACTATGTTCATTATTGTTTCTTAAATG AAACATGTTCTCATAGTTCCTGTCACTGGTTTTTCCATGTTCTATTATTGTCATTCTATTTTAGTGAAATTAAGTAATGT TTTATATATCATTTATTTCAGGAGAAGTGGATGGAGGTTTTCGGGTGTGGAGTGACAGAGCAAGAGATTTTGAAAAGAAA TGGGAAACCTAATAATGTTGCTTGGGCTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATACCAGACA TCCGTCTCTTTTGGTCAAATGATGAGAGATTTACCTCTCAGGTATTTCGTGGATATGTTTAACAAACACCTTCAATAATT TGTCGCTTTTTCCTGGTTGGCAAGATGTTATTATATGGAACTATGGAAGTATGATTTAATCATCTTGAGAATCAAAGTGT TATGCCATAAGTTTCATTCTTTTCTGATCTCTTATGTCTGATATGTGTTTTCTTAATTATTTTATTTACAGTTCTCCAAG GGTCAGTTGGGAGTTAAATTTAAGCCATTTTCAAAGGTAACTTCCACATGTGCTTCTATGTGTCTACCCGTGGGTTTCTA CATTCATTGTCATTGCACTGAGTTGTTCATGGTTAGGAATATTTTTTATTCTTTAGAATATTTACTACAATTTAAAACTG CATATAAATTATCCATGATTGTGAAACTTAAGATAGTCCACACAATTTGTTATGCAAAACTCTTCATATTTTTCATGTTG TTTTAGTGAGTTTTTTTCTGTCTACATAGCAAGTTACGCTCGCTAAACTTAGAGATATTTATGCCCATGGATTTGATACT TCACTATGTTAAAGTCCTTGTCACGATCTAGTTCAGAATTTCAGATACCATAGTTATTTTAAACTAATAAATTTATATTA TATTATCTGCATTTTGGTTTCATTCTTGTCAAATGATACTCATCTACTAATATGTAATGCCGAAGCAAAGGGCATGTAAC TAAGCAATCTTACTAGCCCTTTTTTATGCACAGTCCTTGTGGGATTGTGTTCCTATGTCTGACTGTCTTGTTATTAACCA TGGGGAGTTTATGTTAACTTTATAATTTATATTATTCTCTCTGCTTTGCAGTTTCCTCCCTGCTACAAGGACATCAGTTT CTGGATCAATGAATCATTTACTGAAAACAATCTGTGTGAAGTTGTCATAGGAATAGCCGGGGATCTTGCAGAGGAGGTAC ATGATACACATTTGATTAATTTGAGCATAATTTTCTCTGGCATATTAATTATATTTCTGTAAGTTCTCAAATTAGCTGCT TTCATGATGTTCAATGGAAACTTTATGCATGATTCGGGACTATGGATTGGGGTGACAATATTCTCAGACGCTGCAGCTTT GGTTTCTTTAATATTTCAAAAAAAAAAGCTTTGGTTTCTTTAAAAATCATACAAGCATCAAACACAAATTATAAACCTAC TAGAATAATTCAACCAGTAGCTTAAGTCATCATTTGCCAACAGTATTCTTATCCGCTTAAATTTAATTGGTAAAAGCAAA CCTCGGGAATAAGTTGCTAAACTAAACAAAAGACTAAAACTAGCCTTTGCAACTTGATCTTGATGGAAAATAACATATAT CTTGATGAATTGTAAATAGGCGTGCTTGATCTCATTGATCTGTAAAATACATTCCTATCATCTCAAATGAAGCGATCAAA TTCTTGAGTTAGCAGCAATTGTTGTTTGTAGACTAGTGTTTTTAGAGGCTTTGATACCTTGTTTGCAAATAGCTCCTTGT GCCTAATAAATTTGTGGAGAAATAGTTTTTGGCTGCTTGTTCTCATAATAGAATATAAAACTCCTGAGTCTCTTATTTGA ATAATTAAAAGGCTTAATTGCAACTTTAGTCCCTGACGTTTATCAAAACCACGATTTTAGTCCCTCACCTAATTTAATTA CAAGAATAGTCCTTCACGTTCCCTCCTCTTTGCAACGTTAGTCCTCCTGTCTAATTGTTAACGGAGAAGGCTTATGTGGC AACGCACGTGCCTCTCATGTGACCAAGAAAAACGATTTAATTGCAATTTTGGTCCTTGACTTATACGCATTATGTAGTTT TGGTCCTTAAAGTTGAAAAATTGCATTCAAATTTATATAAAAACAAAAAAAAAAACCAGTATTCATATTCTTCAAATTTA ATTACATATTTAGTAAATCATAATCAGACATCATTTATAAATTTTAATTTTAAATAATTAAAAACATATGTATTGATTTG TTTATACTTTATAGAATAATAAAAATATATTTAATCAATACATTTAACTTAATATAAAAGATATCTGAAAAAAATATGGA GGATAATATATAAATACTTTCAATTTTAATTAAATTGGATAGAAAGAGAAAAAATTATGATTGTTATCAAAACATTACTG AATAAGAATTTAAATAAGTATTTTATAAAATCATAATCAGGCATAGTAAAATAAATTTTAATTTGAGTAGAATTTTTGAA GATGAATAGTTATCATTTTCTATTTCTTTATTGTTTTTTTATTAATTTATATGCAATTTTTGAACTTTAAGGACCAAAAC TACACAATGTGTATAAGTAGGGGACTAAAAGTGCAGTTAAATCATTTTTCTTGGTCACATGAGTGGCATGTGCGTTGCCA CATAAGCCTTCTCTGTTAAAAATTGGACGGAAGGACTAACGTTGCAAACAAGAGGGAACGTGAGGGACTATTCTTGTAAT TAAATTAGGTGAGGGACTAAAATCATGGTTTTAGTAAACGTCAGGGACTAAAGTTGCAATTAAGCCTAATTAAAATTGGC TTCAAACTTACATTTCAGGATGGTACATTGGTACATCATAAAGAACTTAGACTAGAAAATTTTGGGAGTAAGGGCGGTTG TTTAGCAGGAAACTATTTAATATATTTCTCTCTGCTATTGCTAGTGTTCTTTCTGTGCTTAATTTAGAGCAAGTTGTGGT AGTAAGATATGGATGCAGCCATGTAGAAAGAGAATATTGTTTTAGTAAAGAATGGGAATGGTTTGGACTTGAGTTTATAT TAAATAAGACAGGGGTAGTCTCCTCAAAGTTAATGTATAATACGGTATTACGGTATAGTGAAGCTAATGTGCATAGTATC TTCCATGTACAATATTAACATACTTCCTCTAGTTGGAGCACCATAGATGTTGCATGCAACAAGTTTGCTCTGATAGCTTC AATCTGGGTTATCTGAGATGAATAGTAATTATGCCTGCTAGTTGGTCATTTGAGTTAGCAATGCACCCTGAAAGGATTGT AAGTGGCAGAAATTCGATGAGTTTGGTCCTCTCATTATTTAAAGTGATTAGAGACTGCATGCATGGCAGCTTGACTATCA AAAAGTAGCTTCATTCATCAAGGCCATAGTTTGAATTGGTCTAGCAGGGATTTTTTGCTCTTTCTCTTTCAAGAGATGAT GTTGTCTCCAATCAGAATGCAATATCATAGAGCATCTCTTTGTAGTAGAATTTCTCCCATCAGCATTACCATAACCAGTC CCCTGTTTCTTGAAATCACAGGTGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTACAGGAT TGCATATAGGTCCATGGAACGTTCTCTAACTGATGATGAAATTAATGATCTGCAGGTATTAAATATAATTATAAATATCG GACACAAGTCTTGGTTTGAAGTTGTCATATTTTGTTTCCTAAGCTATAACATAGTAACATTATTTTCCTTGTCAATGCAG TGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGGAAGTTGTCATAAGATGA
CDS sequence (LotjaGi5g1v0089800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGACGATCCAACAAATAATGTGCCGGACAATATATTTACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACA CCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATTTTGACACAAATTATTCAGATAAGTTCAATAAGTTCGATGATC TTTGTCCTCTTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTCAGCAGGAGCTATAATGAT ACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAAAAATGGAAATAC CCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCATTATCCTGTCTTTCATCAGATGGAAG GTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCACATCATTTGCCGCAGCAGACCTAAAGAAA TGCCTTGAGGGTCTAGCATGCCATTTATTTGGTGCTGTGGAAATGCGTTGGGTGGATACCTATTTTCCGTTTACTAATCC ATCATTTGAGCTTGAAATATATTTCAAGGAGAAGTGGATGGAGGTTTTCGGGTGTGGAGTGACAGAGCAAGAGATTTTGA AAAGAAATGGGAAACCTAATAATGTTGCTTGGGCTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATA CCAGACATCCGTCTCTTTTGGTCAAATGATGAGAGATTTACCTCTCAGTTCTCCAAGGGTCAGTTGGGAGTTAAATTTAA GCCATTTTCAAAGTTTCCTCCCTGCTACAAGGACATCAGTTTCTGGATCAATGAATCATTTACTGAAAACAATCTGTGTG AAGTTGTCATAGGAATAGCCGGGGATCTTGCAGAGGAGGTGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACC AGCCACTGCTACAGGATTGCATATAGGTCCATGGAACGTTCTCTAACTGATGATGAAATTAATGATCTGCAGTGGAAAGT AAGAGAACAGGTGCAGAGCAAATTGGAAGTTGTCATAAGATGA
Protein sequence (LotjaGi5g1v0089800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDDPTNNVPDNIFTKLGMQLHRRDQHPLGILKNAIYEYFDTNYSDKFNKFDDLCPLVSVKQNFDDVLVPEDHVSRSYND TYYVDPQTVLRCHTSAHQAELLKNGNTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPDEWEASGMDGTSFAAADLKK CLEGLACHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWMEVFGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDI PDIRLFWSNDERFTSQFSKGQLGVKFKPFSKFPPCYKDISFWINESFTENNLCEVVIGIAGDLAEEVQLIDNFTNKKGMT SHCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 148 | 148 | 3.5E-53 | – | |
| PANTHER | 3 | 360 | 358 | 2.9E-184 | ||
| PANTHER | 3 | 360 | 358 | 2.9E-184 | – | |
| SUPERFAMILY | 15 | 257 | 243 | 7.24E-54 | – | |
| CDD | 27 | 252 | 226 | 1.13607E-91 | – | |
| Pfam | 47 | 257 | 211 | 1.9E-48 | ||
| ProSiteProfiles | 113 | 268 | 156 | 12.558 | ||
| Gene3D | 149 | 266 | 118 | 4.1E-50 | – | |
| SUPERFAMILY | 265 | 360 | 96 | 2.75E-27 | ||
| Gene3D | 267 | 360 | 94 | 1.8E-33 | ||
| Pfam | 270 | 360 | 91 | 3.3E-23 | ||
| ProSiteProfiles | 270 | 360 | 91 | 22.953 | ||
| SMART | 270 | 360 | 91 | 7.4E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Phenylalanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi5g1v0089800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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