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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0094900 |
| Transcript ID | LotjaGi5g1v0094900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|I3SA29|I3SA29_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0094900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:16842926..16844129) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGCTCTCTATGAGTTTTTTCATAGACAATACTCGAACGCGGTACCTTTTACTAGGAGAACCAAGTACCACATGAAAC CAATAGCCAAATAGCAATTCTGACTTCTATATAAGCCTACTCAACTCACATTCAACAAACAAGTTGCCCCTCACCCAAAA AGGAAGAAAGCAAGACAAGAGAAAAATGTACTCAAGAAAGACCCTTTGGCTTTTCCTTGCTATTCTCTCCCTCAAAGTAA CAATCACATTGGCCTCAGACCCTGATCCAGTTCAAGACTTCTGCATACCAAACCCAACTTTTGCCTCCATAAAAACTCCT CACCACACCATTCTCCCTTGCAAGAACTCCACAGAGGCCACCACCGATGACTTTGTCTTCTCCGGCATGAAAGCCGCGGG GAACTTCTCAGACATAGGACTCGCTGTGGTATCCGCAACTCCCACCAATTTCCCAGGTCTCAACACTCTTGGCATGTCGT TCACAAGAGCAGATATTGAAGTTGGAGGCATCAACTCGCCGCATTTTCACCCAAGAGCCACGGAACTTGTTCATGTGGTG CAGGGGAAGGTGTATGCAGGTTTTGTGGATTCCAGCAACAGGGTGTTTGATAGAATGCTCGAACGAGGCGAGGTTATGGT GTTTCCCAGAGGGCTTATGCATTTTCTGATGAATGTTGGTGATGAGCCTGCAACGCTGTTTGGAAGTTTCAATAGCCAGA ATCCTGGTATGCAGAAGATACCTTCTGCTGTGTTTGGTTCCGGGATTGATGAGGAGCTTTTGCAAAAGGCTTTTGGATTG AGTTCTAAGCAGATTGGAACCATGAGAAGGAAATTTGATCCCAAACAAGCTAGGTAGGTAGATCACTAAAAAAGATAGTC CTCTTCTGCATTTCCTCTCAGAGTTTGAGTTATATCTTGGGGTTTAAGTTTTCTTTCTTCTTTCTTTGTTTTGAGTTTTT TCAAAATCCCACCCCTTCTCCCACTGTGTTATTACCATTGTACTACTACTATAAATGAAGAATGGAGTGCAGTTAGTTCA CATTAGCTTGCTTTGAGAACCTAAAGCAACAATCAATCCCTTCCACTCTCCCAAGAATAACAATAATAGTAATATCAAAG AAAGTGATGGTTCAAAGAAAGTGTTGCTTTGATACTAAAAAATAGTATCATTATAGAACAATTTTGATTTCTATTCATAA AAAC
CDS sequence (LotjaGi5g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTCAAGAAAGACCCTTTGGCTTTTCCTTGCTATTCTCTCCCTCAAAGTAACAATCACATTGGCCTCAGACCCTGA TCCAGTTCAAGACTTCTGCATACCAAACCCAACTTTTGCCTCCATAAAAACTCCTCACCACACCATTCTCCCTTGCAAGA ACTCCACAGAGGCCACCACCGATGACTTTGTCTTCTCCGGCATGAAAGCCGCGGGGAACTTCTCAGACATAGGACTCGCT GTGGTATCCGCAACTCCCACCAATTTCCCAGGTCTCAACACTCTTGGCATGTCGTTCACAAGAGCAGATATTGAAGTTGG AGGCATCAACTCGCCGCATTTTCACCCAAGAGCCACGGAACTTGTTCATGTGGTGCAGGGGAAGGTGTATGCAGGTTTTG TGGATTCCAGCAACAGGGTGTTTGATAGAATGCTCGAACGAGGCGAGGTTATGGTGTTTCCCAGAGGGCTTATGCATTTT CTGATGAATGTTGGTGATGAGCCTGCAACGCTGTTTGGAAGTTTCAATAGCCAGAATCCTGGTATGCAGAAGATACCTTC TGCTGTGTTTGGTTCCGGGATTGATGAGGAGCTTTTGCAAAAGGCTTTTGGATTGAGTTCTAAGCAGATTGGAACCATGA GAAGGAAATTTGATCCCAAACAAGCTAGGTAG
Protein sequence (LotjaGi5g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSRKTLWLFLAILSLKVTITLASDPDPVQDFCIPNPTFASIKTPHHTILPCKNSTEATTDDFVFSGMKAAGNFSDIGLA VVSATPTNFPGLNTLGMSFTRADIEVGGINSPHFHPRATELVHVVQGKVYAGFVDSSNRVFDRMLERGEVMVFPRGLMHF LMNVGDEPATLFGSFNSQNPGMQKIPSAVFGSGIDEELLQKAFGLSSKQIGTMRRKFDPKQAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 3 | 221 | 219 | 5.4E-111 | – | |
| PANTHER | 3 | 221 | 219 | 5.4E-111 | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 23 | 7 | - | – | |
| Phobius | 24 | 223 | 200 | - | – | |
| Gene3D | 24 | 220 | 197 | 1.5E-68 | ||
| SUPERFAMILY | 46 | 219 | 174 | 6.54E-42 | ||
| SMART | 66 | 211 | 146 | 1.0E-47 | ||
| Pfam | 74 | 209 | 136 | 3.7E-42 | ||
| ProSitePatterns | 108 | 121 | 14 | - | ||
| PRINTS | 113 | 133 | 21 | 9.6E-24 | ||
| PRINTS | 143 | 163 | 21 | 9.6E-24 | ||
| PRINTS | 176 | 191 | 16 | 9.6E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi5g1v0094900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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