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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0098800 |
| Transcript ID | LotjaGi5g1v0098800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760; TrEMBL-Plants: tr|I1JGM4|I1JGM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0098800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17755850..17758072) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAAAATAATTAATATAGTTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTT ATAAATAGGACCGGAGGGAGTACATACTAGGAAGTTCCTTTGACACTGTCACTTCCAACAGTTATCCTTAGTGATGCTTT TGTTTGCGTGGGCACTGAGGGAAAAACCTTAAAACAAACATGTACTCAGTGGTAGCCGAGTCATGTATTGATATGCTATA TAGGTGCAGAAACGTTGTTCATATCAAACAAGTTCATGCCCACATGATAGCCAATGGAAAATTGCAAGATCTCGTTTTTG CAAACAAGCTCCTTTACACCTATGTCCAACACAAGGCCATGGATGATGCTTACTACCTGTTTGATGGAATGACAATGAGA GACCCCACTACTTGGAGTCTCATGGTTGGTGGGTTTGCCAAGATTGGTGACTATGGCAATTGCTATGCAACCTTCAGGGA GGTTCTGAGGTGTGGTGTTTCACCTGATAACTACACTTTGCCTTTTGTGATTAGAACTTGCAGGGACCGAAAGGACCTTC GAACGGGCCAAGCGATCCATGGCGCGGTCTTGAAATATGGCTTGCAAATGGATCATTTTGTTTGTGCCTCCCTTGTTGAC ATGTATGCCAAGTGTATGTTGATTGAGGATGCTCAACGGCTGTTTGATGGAATGCCCAGTAAGGACCTTGTGACTTGGAC AGTGATGATTGGTGCTTATGCTGATTGCAATGCGTACGAGTCACTGGTCTTGTTCGATCGAATGAGGGAAGAAGGTCTTG TTCCTGACAAGGTTGCTATGGTGACCGTTGTCAATGCATGTGCCAAGTTGGGGGCTATGCACAGAGCAAGGTCTGTTAAT GAATATATTGTTAGAAATAGTTTCCCTTTGGATGTGTTCTTGGGGACTGCAATGATTGACATGTATGCCAAGTGTGGGAG TGTTGAGTGTGCTAGAGAGGTTTTTGATAGGATGAAAGAAAAAAATGTCATTTCATGGAGTGCTATGATTGCTGCTTATG GATATCACGGGAAAGGGAAGGAAGCCATTGATTTATTTAACATGATGTTGAGCTGTTCAATATTTCCAAACAGGGTTACC TTTGTCTCCCTCTTATATGCTTGTAGTCACTCAGGGCTGATCGAAGAGGGTCTTCGCTTCTTCAATTCGATGTGGGAAGA ACATGCTGTTAGACCGGATGTCAAACATTATACCTGCATGGTTGATCTTCTTGGACGCGCTGGGAGGTTAGATGAGGCTG TTAAATTGATTGAGGCCATGGCAGTTGAGAAAGACGAGAGACTGTGGAGTGCTTTGATTGGGGCATGTAGAATTCATGGG AACATGGAGTTGGCAGAAGAGGCAGCTAATTCTCTACTTGAACTGCAGCCACAAAACCCAGGGCACTATGTGTTACTATC TAATATTTATGCAAAAGCTGGTAAGTGGGAAAAAGTTGCAAAATTTAGGGATATGATGACTCGAAGGAAACTGAAGAAAG TTCCTGGATGGACGTGGATCGAAGTGGATAATGAAACGTACCAGTTCAGCGTCGGAGACAGATCTCATCCTCGATCAAAG GAGATCTATGAAATGCTGATGAGTCTAATCAAGAAGCTGGAGGTGGCTGGTTATGTACCTGATACAGATTTTGTGTTGCA TGATGTTGAGGAGGAAGTTAAGCAAGAAATGTTGTACACACATAGTGAAAAGTTGGCTATTGCATTTGGCTTAATTGCCA TCCCTGAGGGTGATCCCATAAGGATCTCCAAAAATCTGAGGGTCTGTGGTGATTGTCACACATTTAGTAAGATGGTTTCA GCTGTTATGAGAAGGTCCATAATTGTTCGGGACGCGAATCGTTTTCACCATTTCAATGAAGGGACTTGTTCGTGTGGGGA CTATTGGTAGCTTGACGATTATACCAGTCATTTTTGTGTGTCTACCAAAATGTAATACTTAACAAGTACGAAAATGCATG ATAATTTTGAAATGTAACTGTATACTACAACAGAGGGGTACTTGGTAAGTTTGGAGAGTCCTTAGGCCTTCTGCATCTAT GAGTTGATTTTTGAGCAATTAAAGCTCATAAATTAATATACAACATTTGATAATGTTAATGTTACTCTAGATAGCTTCTG TTTGTAATTACTTTGAGATGCTATTGAAATCAAATTATGTAATTGTCAACTTTCTTGTTTGAG
CDS sequence (LotjaGi5g1v0098800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTCAGTGGTAGCCGAGTCATGTATTGATATGCTATATAGGTGCAGAAACGTTGTTCATATCAAACAAGTTCATGC CCACATGATAGCCAATGGAAAATTGCAAGATCTCGTTTTTGCAAACAAGCTCCTTTACACCTATGTCCAACACAAGGCCA TGGATGATGCTTACTACCTGTTTGATGGAATGACAATGAGAGACCCCACTACTTGGAGTCTCATGGTTGGTGGGTTTGCC AAGATTGGTGACTATGGCAATTGCTATGCAACCTTCAGGGAGGTTCTGAGGTGTGGTGTTTCACCTGATAACTACACTTT GCCTTTTGTGATTAGAACTTGCAGGGACCGAAAGGACCTTCGAACGGGCCAAGCGATCCATGGCGCGGTCTTGAAATATG GCTTGCAAATGGATCATTTTGTTTGTGCCTCCCTTGTTGACATGTATGCCAAGTGTATGTTGATTGAGGATGCTCAACGG CTGTTTGATGGAATGCCCAGTAAGGACCTTGTGACTTGGACAGTGATGATTGGTGCTTATGCTGATTGCAATGCGTACGA GTCACTGGTCTTGTTCGATCGAATGAGGGAAGAAGGTCTTGTTCCTGACAAGGTTGCTATGGTGACCGTTGTCAATGCAT GTGCCAAGTTGGGGGCTATGCACAGAGCAAGGTCTGTTAATGAATATATTGTTAGAAATAGTTTCCCTTTGGATGTGTTC TTGGGGACTGCAATGATTGACATGTATGCCAAGTGTGGGAGTGTTGAGTGTGCTAGAGAGGTTTTTGATAGGATGAAAGA AAAAAATGTCATTTCATGGAGTGCTATGATTGCTGCTTATGGATATCACGGGAAAGGGAAGGAAGCCATTGATTTATTTA ACATGATGTTGAGCTGTTCAATATTTCCAAACAGGGTTACCTTTGTCTCCCTCTTATATGCTTGTAGTCACTCAGGGCTG ATCGAAGAGGGTCTTCGCTTCTTCAATTCGATGTGGGAAGAACATGCTGTTAGACCGGATGTCAAACATTATACCTGCAT GGTTGATCTTCTTGGACGCGCTGGGAGGTTAGATGAGGCTGTTAAATTGATTGAGGCCATGGCAGTTGAGAAAGACGAGA GACTGTGGAGTGCTTTGATTGGGGCATGTAGAATTCATGGGAACATGGAGTTGGCAGAAGAGGCAGCTAATTCTCTACTT GAACTGCAGCCACAAAACCCAGGGCACTATGTGTTACTATCTAATATTTATGCAAAAGCTGGTAAGTGGGAAAAAGTTGC AAAATTTAGGGATATGATGACTCGAAGGAAACTGAAGAAAGTTCCTGGATGGACGTGGATCGAAGTGGATAATGAAACGT ACCAGTTCAGCGTCGGAGACAGATCTCATCCTCGATCAAAGGAGATCTATGAAATGCTGATGAGTCTAATCAAGAAGCTG GAGGTGGCTGGTTATGTACCTGATACAGATTTTGTGTTGCATGATGTTGAGGAGGAAGTTAAGCAAGAAATGTTGTACAC ACATAGTGAAAAGTTGGCTATTGCATTTGGCTTAATTGCCATCCCTGAGGGTGATCCCATAAGGATCTCCAAAAATCTGA GGGTCTGTGGTGATTGTCACACATTTAGTAAGATGGTTTCAGCTGTTATGAGAAGGTCCATAATTGTTCGGGACGCGAAT CGTTTTCACCATTTCAATGAAGGGACTTGTTCGTGTGGGGACTATTGGTAG
Protein sequence (LotjaGi5g1v0098800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSVVAESCIDMLYRCRNVVHIKQVHAHMIANGKLQDLVFANKLLYTYVQHKAMDDAYYLFDGMTMRDPTTWSLMVGGFA KIGDYGNCYATFREVLRCGVSPDNYTLPFVIRTCRDRKDLRTGQAIHGAVLKYGLQMDHFVCASLVDMYAKCMLIEDAQR LFDGMPSKDLVTWTVMIGAYADCNAYESLVLFDRMREEGLVPDKVAMVTVVNACAKLGAMHRARSVNEYIVRNSFPLDVF LGTAMIDMYAKCGSVECAREVFDRMKEKNVISWSAMIAAYGYHGKGKEAIDLFNMMLSCSIFPNRVTFVSLLYACSHSGL IEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEAVKLIEAMAVEKDERLWSALIGACRIHGNMELAEEAANSLL ELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTRRKLKKVPGWTWIEVDNETYQFSVGDRSHPRSKEIYEMLMSLIKKL EVAGYVPDTDFVLHDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGDPIRISKNLRVCGDCHTFSKMVSAVMRRSIIVRDAN RFHHFNEGTCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 130 | 128 | 5.7E-16 | ||
| PANTHER | 16 | 142 | 127 | 1.9E-92 | – | |
| ProSiteProfiles | 37 | 67 | 31 | 6.281 | ||
| ProSiteProfiles | 68 | 102 | 35 | 10.216 | ||
| Pfam | 71 | 100 | 30 | 0.043 | ||
| ProSiteProfiles | 103 | 137 | 35 | 5.053 | ||
| PANTHER | 123 | 224 | 102 | 1.9E-92 | – | |
| ProSiteProfiles | 138 | 168 | 31 | 7.761 | ||
| Pfam | 144 | 169 | 26 | 0.11 | ||
| ProSiteProfiles | 169 | 202 | 34 | 8.966 | ||
| Pfam | 171 | 200 | 30 | 0.55 | ||
| ProSiteProfiles | 203 | 237 | 35 | 6.928 | ||
| Gene3D | 204 | 322 | 119 | 4.1E-30 | ||
| SUPERFAMILY | 214 | 407 | 194 | 2.98E-9 | ||
| PANTHER | 229 | 433 | 205 | 1.9E-92 | – | |
| ProSiteProfiles | 238 | 268 | 31 | 9.306 | ||
| TIGRFAM | 243 | 270 | 28 | 2.2E-5 | ||
| Pfam | 268 | 316 | 49 | 5.5E-10 | ||
| ProSiteProfiles | 269 | 303 | 35 | 10.578 | ||
| TIGRFAM | 271 | 304 | 34 | 2.7E-6 | ||
| ProSiteProfiles | 304 | 339 | 36 | 8.802 | ||
| TIGRFAM | 306 | 335 | 30 | 5.9E-4 | ||
| Gene3D | 323 | 468 | 146 | 3.9E-20 | ||
| Pfam | 338 | 367 | 30 | 4.0E-6 | ||
| ProSiteProfiles | 340 | 374 | 35 | 8.934 | ||
| TIGRFAM | 344 | 367 | 24 | 5.6E-4 | ||
| ProSiteProfiles | 406 | 440 | 35 | 8.002 | ||
| Pfam | 410 | 437 | 28 | 0.44 | ||
| Pfam | 442 | 565 | 124 | 1.7E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0098800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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