Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0099300 |
| Transcript ID | LotjaGi5g1v0099300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|C6TEZ3|C6TEZ3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0099300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17831561..17840011) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGTCAACCCTCTCTCTTAGCTCTATCTTCTTCCTCCCCACTCCAAAAACAACCACGAATCCCTCGTTAATTACAA TTCTACCACCGCTTCATTTTCACGAAACCGCCACTAACTACCACTGTAGCAACTCTTTCTTTTCTTCTCAACTCAAGTTT CTTTCTTCTTCTTCTTCTCTCTCTGTTTCGAAGAACGTTGTTGTTGATGTTCATCAAATTTGTAGAAGAATCACATCATC GCGATAATGGAACAGCAACAGAGAAGTCTCTCCGGTTCGTCATCGCAGAGCCCTAGATCTCCGTCTTCCTCTCAACAACA ACCGTTCCTCTCCGTCTCCGTCACCGATCCCGTCAAGCTCGGCAATGGCGTCCAATCCTACATCTCCTACCGCGTCATCA CCAAAGTATTCATCTACTTCTCTTCTTTATTTATGCATTTTTGTTCCTTTTATTGGAAAATTCAATCCGAGTCCAGCTTT GATTTTTGTTTGTTGAGTTCGAGATGAGTGTAGAAATGATCAAATGGTGAGATCGTGAAAATCTTGGTTGTTTGTGTGAT TGGTTTTGCTGAGAGGCTTGAAGTTCAGTTTGGGGGATTTTTTAAATTTTTTTTTATCAATGGTCATAACTCTTAAGTAA TTAGATTATTAGGAATGATTAAATGCTAAGTGGCGATCCGTTTGTGAGGCGTTGTAGTTTGTAATGATTGGAATTGCGGC ATTGCGATTTGTTAGAACTTAGAGATGTATGAAGAAGCTAAGCTCTCTTGGATTTGGATGATGTTTTTTTTTTTAAATGC TTGCCTTGTGATTCTGTTGTCAATTTAGTACATTGTGATTTGCATTTATGCAGTAGTTGTGGTTAAGAATTGAGATGGGA CATGCATGCTTGTTGATGATGCCTATTTCGAGCATATGATTACTGCTTTTCTTTTGGAGAACTTTTTGGTTTATGATTTT CCAGCTATGAAGCATGGGTACTCCATTTTGGTAACCGGGTACGTACCCGGTACCGTTGGGTACTTCATTATCTCATTCCC GGTACCGTATACCGGTACCACCGGTATTGTACCCGTATACGAGCAACATAGTTTTCCAGAAACAGAAAGTTCAAGGATGA TGGACAATTTTCTATTAGCTGAAATATTGTCACACAATCTTAATTCTCGGACTACCCATAGCTTGAGTATATTTATCGCA TTAAAAGCTCTATATGAAAAATGAATAATTATTTCCTCCCTTATTTTCAATGTCAAGATATCCTCTTTTGTCATTTATGA GTTTTAGCTCCACCAAATGCATTGGGTAGGTGTGTAACTCTAAACATGTGCCATGTCATCATCTGACTATCTGAATCAAT TTTTGGCAGACAAATTTTCCCGAATACCAGGGACCTGAGAAGATTGTCATCCGGCGATACAGTGACTTCATTTGGCTACG CGATCGCCTTTTTGAGAAGTACAAAGGCATTTTTATCCCCCCTCTTCCAGAGAAAAGTGCTGTAGGTAACATCTAAGAGT ACTCTTACTTGCATGTTTAATAATAGTTTGAGACGTCCATTCGAATTTTTATGCCAATGCTACCTTATAAATCTTTCAAA GCTTTATCTTCCTGCTTATGTTGATTTTCTGAAATTATTGTCTTTTGTTATTGTAATGAAAACATCTTAATTGAGGGGAA CTGCTGTATTTTCCCATGTGAAAAAAAATTAAGATATTTTTCATTAAGTTAACTTTGGAAGCATCCGGTCATCTGTTTGC CTTTTTATTGTTGCAGAGAAATTTCGTTTCAGTGCTGAATTTATTGAGATGAGGCGTCAGGCTTTGGATATATTTGTAAA TAGGATAGCATCACATCATGAACTTCAACAAAGTGAGGACCTGAGGGTGTTTTTGCAGGCAGAAGAAGAGGTGATGCCTC ATGCCTCTATGCATCTGTATCTATCTTATATGTGATTGATTGGCTTTGTTGCTCTTACTTTTCGTTTCTGCTTCCGTTGC TGTGCCATGTTACTCCACTGTTTGTTGTTTGATTCCAAATGTTCTAAACAGTTATCAGTATCTTACGATACATATCTCGA TAAGATACAAATTCTTGAGGTAGTGATGCGTATCGCAGTGTTAATCTAAAATGAACCTGAATCTCATTTCTTATCTATGA GTTAGAGCTAAATTTTACAATTCACTAGTCCTTGTTGAATCTTACGATTCTAAATTGTGTGCATGTTGCACTTTAGTCGG GTTGTGTGGCCCATATAGGTTTCTGGTGTTTCTTGAGAAGAGTTTTTAAGTTTTTTGCATGGCCCATATAGGTTGCGTGG CCCACACGACTAATATTGCTGTGACCTAGTGTTGACCTTGGGGATGATGAATGATTCAATTAGTTAGCCGACTAACTATA GGAAGTAGGAAAGTAATTTGCATTTTGTCATCTTATTGATGTTTTTTGGAGGGTTTGAGTACTTAAATTTTGTGCAAGCA CCCACAAATTTCCTTCTTATTTTGATTTATGGCTTGGATCTTGTATTATTTTAAGGTTAATTATATGATATATCAGCTTA TGTTTCAATTTATGACTTAATTTTTTTGTACCATGTATCTTCCGATACATAAAAAGATTGGATTCACGATTGGGAAAATA GGTCTTCCAATTTACGATTCGTATCTCAACTTAATAACCATTTCTATTTAGTCTAAGACTTACATTTTGTCTACATTAAT TGTTTTGTTTTGATGATGAGTTTGCTGAATTTACTGTCAAATGCATGATTCCAAATTTTATGACTTATATTAGTGATTGA TATATGGAAAATTGAATTATGCCTTATGGTTGCTGATTCCATAACTACCTACCTTATAATCACTGTACATGGTGGATAGT ATGGGATATGTGATGTGCAAGACTTATAATACCTTTCCCATCCTCTCCCGTGTACGATGTAGGTGTATCTGTCAGTGTTT TCAATCTCTTACTATAGCGCTACATTTGTTGTCAATCCCGGCGGGATCCTATCCCATCCCAGCGATAACCTGGGATAACT TTTCCCATTCCAGCCTAGAACGTTGTCGCTGCCAAAATCGTGGCCTATCCCGCACGGTCGTGATTCTCCGTTTTTTTTTT TCTTTCTGAACTCCTGTTTTCCTAAAATACCTTTAATATCAAAACATTGGGGATTATATTTTAAGGGTATTTCTGGGTTT ACCCTACGAGATAAAACCCTAAAATCTTCACACTCGCCAATTCCTTCTCACACAACTCTTTCAGGCTGCCCTTCCCTCTC TCTCTCTCCCCTTTCCCTCTCTCTCCTTCCCTCTCATCGCCGCTGATCTGTGAAGCACCAGGACCAGCCGGCAACCACCG CGCGACTCTGGCGAGCTTCTTGTAAGGTAGTTTCTCCTTGCTTCTCCTCTCCTCTGTCATGTTTTATTTCCTCTGCTCTG TTTTTCGTAGTTCCTCTCCTCTGTTCTCTTCTCTGTTCTCCTCTCTCTGTTATGACTTTAGTATTTAAGTAGCTCAGTAT CGTGTATGATTTTCTTTTTAGTTCTAGCCCTATTAGGACTTTAATTGCTAGTTTGCTACTATGAAAGTATGCATATATTA TGAATTTCAAGTAACATTTATCATTGATTTAGTATGTACATATATATGGTATTATACAAAATATAGACAAAAATTCAATA CCCCAGCTATTCCGCTTTCCGGGATCCGGCTAACCCAGTTTTGGGGCTGACTGGGACGGGCTGGGAACTGGGATTGATAA CATAGGCGCTGCTGCAGTGGCGGAGCAGCTGTCTTCTGCGACAAAAAGGGGGATGGCGGAGCGCATCGCTGTCGCGACCT TGAAGGCGCGATTGCAGTCTGAGTCGCTGTCGTTGCGGCGCTATCAGTGTGCAGTGCTGCTTCTCTTTCAGGAAACCCTG TTTTACCCTTATAATGATACTGTTAGGGGAACATTTAAGGGTATAATGGGTAATTCATGCTCAGGTTCTTCCCAGTGCGC AGCCCTTGATCTCCTTTCTTCCTTGAATCCAGCAAGCTGCAACTTTGACCTGACTCGAGGACTTCCGGCAAGCCTCCATC TCCCTTCTTCCTCCAGCATCCTTGCTACTCTGTTTTGTCTCTCTCTTATTTTATTTTTTTCCTTTCAGTCTTATTTCTCT GTTTTTTTTTTGGTCGACAGGGTTATTTCTATAAGTCTATATTGTATATCTTTTATCCCATTAGCGTCTATCTATTTTTA ATATATCCCCATAGCCTCCCTGTTCTTTGACTATTAATTATGAATGTCTCAATTTCATAAAATTTGAGTACCTTTTGTCA TTTTTGAGCAATTATGTGTATATTATAGTTTATAGTTTTTATAAAATATATCGGAAAATTCAGCTTAGTGGTCATCCCGC TATGCGCTATACTGCTATAGCGGTTTTGGGTCGGCCGCTACGTGCTGCTATCCGGAATTGAAAACACTGGTATCTATTGT ATTTGTATCTTATCTAGTTCTTCTCTTTTTATCACATTTGACTTTTAAGAGGTAAAAGAAAAATCTTATTAAAGCTTGAT TTGATTATACATACTATGCAGACAATGGAAAGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCAGCTGATTT AGTGCAGATATTTAAGGTAAGACATGTTTGAATGGTATTTTGGAATATTGATTCATTTTATTTTACTAGATTGAAGTCTG TTAATTGGAGTAATTTTAAAATTTGAATTCCAATAGTTTCCTGTCTGAAATAACCTGGCAAGGGGTGTTTTTTTAGTCCT TAGTCTTAGTAGCTAAATTATCAGAAATAATGAAAAGAAACATGATGTATTTTTTTAAATATTTGATTTTGCTAACCTAT CTGGTTGAGCGTGCTGTACGTTCAGGCGTTTTTTTCGATTTGTAATTGCTTATGTAAATTCTGGCAGGATGTACAATCCA AAGTGAGTGATGTTGTCCTTGGGAAAGAGAAGCCAGTGGAGGAATCAAATCCTGAATATGAAAAGCTGAAACATTATATC TTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCATATCGTCTTGTGAAGAGGCATAGAGGTGATGTTTGAAT TTAAGATTTCATTTTGGTAATTATTATTGTCTTCTGTGTCTATTTCACTTTCTGTTTTACTCATCTATGCTTACTTTTAC ATTTTATCCACTCTTTTGGCTAGATTAATTCATAACAAAAATTGTAATTTATAACTCATGCAGAGTTGGGACAATCGCTG GCAGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCCTCTGAAGGAAATGCTCTTGGGAAAGCATTCTCTGAACTTGGGAT TAAGTCAGAGATTTTATCTGCCAAGCTGCAAAAGGAGGTAAGTGTCCAAGTGTTGGTGTCGTACGTTATTTTACTGGTTA TTCATATATGGGTGCTTGCATGTTGAGAGGGGTGATAAGAACTATCCTAATATGACTCTGTCAAGCAGGCACAACAGCTC TTGATGGATTTTGAAGAACCTTTGAAAGATTATGTCCGTGCTGTACAATCTATTAAGGTAGGTCTAGTTTTTGTTTTCCT TCATTATTTAGTAAGTAAATTGTATAACCTGATTAAGATATTGTTTGTGAATTTTCCTTTGTTAAACAATTATTCAGATA TTTGAATCCTAACATTTTTTCTTTTCCAACCGCCTTACCCTGAGAGTGAATGGATTGTTACACCTTATTTTTCAACTCAA TACTCTTGTTTTACATTCTGAAACAGGCAACAATCGCAGAGAGGGCCAATGCCTTCAGGAGACAATGTGAACTGGCTGAA ACAATGAAGCTGAAGGAGATTAATCTGTATGGTTCTATTACTTGACTAACGTAGTTCGTAAGGCAGAATAATTTCTTTTT TACATAGCATTCCTTTCCCCCTACTAAAACCCTTGTGTGTATGTAAATGCAGATAAGCCTTGGTTGTGTCTTGTATTGTG GAATATGTAAAAATTCACTTAGTGTTTGGTAAATAGCGGGGTAAAAATCTCTCCACTGCAAGATTTGGGGATTTGAAGGG AATAGAAAATGATTTACAATTTAGGAACTGTATTGACTACAATATCCTTGTATATTTTTTAATTTTCAAAACAGTCCTTA TGTATATTAATACCTAGCTATGCCCCCATGCTACTTCATGCTTCTTCACTCTCACATAGGTCAAGCCTTAGTTATATGCT TTTTTTATATCACTTCTTCTATTTTGTTTTATCACCTTCTAGAAGGATACATTTGTAAAATTACTGTTCTGTTGCCTCCC CTCCCCTTACACCCCAAACAATAGGAGGCTTATTTTCCTTCCCCTCTTCTCCCCTTTTGGCTGATGCCTGATTGTTTACA GAACCTAGAGGACTGACTACTTGGTGTTTTTATTCTGATTTAAATTTTTCGTTGTTGTTTCGAATCCAGTGACAAACTCA TGTTGATTCGGTCTGATAGAGTTGCAGAAGCTGAACGTGAATATAACGAGGTAAATTTGCTAACATTTGGCATCCATTGA TGAAAACTTATGCATACAGTTTGTTGGCTGGACTGATATGATTTTGTCATACAGTTGAAGGCAGAGAGTGAACAAGCAAC AAAGACATTTGAGACAATTGTAAAGTTAATGAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAA TCGCTTTCCATGAATTTGCTAAAGGCCAGGCACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAA CTGGAAGCATGTTCCTCCTCATAAGAGTTAATGAGTGAGTACTACATAGCATAGATGAAGTACTCTTAACAGCTGGTTAC CGGAACTAGGATTTGGCATATGTGCGGCTCTTGTTTTGTTAAAGGGCTTACACAGGAGTTATCTGCTGTTTCAAATTATG TTGTAAAAGTGATTTTCTTACTTGAATTTTGTACAAATTTTAAACAAAGTAAAGGCTGCTACCGAAGTCTTTGAAAATTT AAATGCCATCTTTAGACTATCTTTAGAATACCAACCTTTGTCACTATCTACTACCCCTCCATGATTTGCCAAATAACAAA CTTAGCTTTGCCATATCGATATATTTCTTTTATTTCTTAATCTTATAAATGGCATTGCTGTCCTCCTTTTTGTGTGGTGT TAAAAAACAATTTACAAGCAGGCAAGTTAGGCAATTTTTTTTTTTGAATAGTGCAAAAAAGAAATGATATTCACCCGAAT GGTGTGAATTTTACCGGCTGGGAGCCCATGTGGCAGCTGAGGTGGGATTTGCGTCACCCCACCCGAATCCCAATGCGATT TCGCCCTAAGCTACGTGTACCCAACTTGATTTAGCAAAAACTTTTGGAAATTCAGTGAATCTTTTCCTTCCCTGGGTGAG GGAATCTGCAGCTTTTCGTGACATTGAATGCGCCTAGTTGCACACGAATCCTTACCATGACGAACCACGAGGCTAACTTG ATGGGATGCTTGGAGACAGGTCATGTAGAAGAGGTGTTGAGTGTCGTGGACCGGGGCGCATTCAATCAATGCGCGTAGAG CGGGGCACATTCATTATGTCTGACCAGACTAGATGAGACATGATGTTGACCGAGGCACTGAATGCACGTGGATTTGGTGC ATTCAATGAAGCCGCATTGATTGGGGCAAATCTATGTTGCATGTTGTAGCGGTCTGAACCCTTATACAAGGATTGCCGGA CACTCGTAAAAATCATTCTTCCTCTTAAACATTCATTCTTCCTCCCAACTTTAACTCTTCCTATCTACACTCATTCTTAA CCTTTGTAAAATTTCAATGGCGGAGGAATTAGTGATCAATCCTCCTGTGCCCAATAATTCCGACCTGTTGTATCTTAAAG ATACCCATGTTTAAGACAATGTCTGGAATGAAATACTCATGTTTGAGATCGCGAATTGAGATGCAAAGACTCTTAAATGG TGTTCCGCTTTAATCGAAGGTCACCTCTGAGCTGCTAGATTTTTTCAGTTTGCGCTAGTCTCAGATGTTCATCCAGACCT TCAGTTGATCTTAGCGCTTGGTGAAAGGTGGAGACCATAAATGCACACTTTTCACATGTCGTTTGGAGAATGCACCATCA TGCTCCAAGATGTTGCATTACACCTTGACTTGATTATTGATAGGTGTGATTGGGCTTTTATCGTTAACCAATTTCTGGGA TGGAATCCACCACTAGATATAATTGGAGAAGGTGCATTGAGAATGAAATGGCTAAGTTTTACCTTGAATAATGTGCAAGA TTTCCTTGGGGACCCCCATTAATTGGCATGTTTTGCACGAGGATACATTATGCGCAAGATTGGAGATTGTTTTTTTATTT GGCCACAGTGGTTCACACGTTCCTTTGAGATTTCTTCCTCTTTTAGCGGAC
CDS sequence (LotjaGi5g1v0099300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAGCAACAGAGAAGTCTCTCCGGTTCGTCATCGCAGAGCCCTAGATCTCCGTCTTCCTCTCAACAACAACCGTT CCTCTCCGTCTCCGTCACCGATCCCGTCAAGCTCGGCAATGGCGTCCAATCCTACATCTCCTACCGCGTCATCACCAAAA CAAATTTTCCCGAATACCAGGGACCTGAGAAGATTGTCATCCGGCGATACAGTGACTTCATTTGGCTACGCGATCGCCTT TTTGAGAAGTACAAAGGCATTTTTATCCCCCCTCTTCCAGAGAAAAGTGCTGTAGAGAAATTTCGTTTCAGTGCTGAATT TATTGAGATGAGGCGTCAGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACAAAGTGAGGACC TGAGGGTGTTTTTGCAGGCAGAAGAAGAGACAATGGAAAGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCA GCTGATTTAGTGCAGATATTTAAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGAAGCCAGTGGAGGA ATCAAATCCTGAATATGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCAT ATCGTCTTGTGAAGAGGCATAGAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCCTCT GAAGGAAATGCTCTTGGGAAAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCAAAAGGAGGC ACAACAGCTCTTGATGGATTTTGAAGAACCTTTGAAAGATTATGTCCGTGCTGTACAATCTATTAAGGCAACAATCGCAG AGAGGGCCAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGATTAATCTTGACAAACTCATG TTGATTCGGTCTGATAGAGTTGCAGAAGCTGAACGTGAATATAACGAGTTGAAGGCAGAGAGTGAACAAGCAACAAAGAC ATTTGAGACAATTGTAAAGTTAATGAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAATCGCTT TCCATGAATTTGCTAAAGGCCAGGCACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAACTGGAA GCATGTTCCTCCTCATAA
Protein sequence (LotjaGi5g1v0099300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQQQRSLSGSSSQSPRSPSSSQQQPFLSVSVTDPVKLGNGVQSYISYRVITKTNFPEYQGPEKIVIRRYSDFIWLRDRL FEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQALDIFVNRIASHHELQQSEDLRVFLQAEEETMERLRSHETGIFKKKP ADLVQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGQSLADFGKAVKLLGAS EGNALGKAFSELGIKSEILSAKLQKEAQQLLMDFEEPLKDYVRAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLM LIRSDRVAEAEREYNELKAESEQATKTFETIVKLMNEEIGRFQEQKTLDMGIAFHEFAKGQARLANGIAEAWRSLLPKLE ACSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 2 | 404 | 403 | 1.0E-144 | ||
| PANTHER | 2 | 404 | 403 | 1.0E-144 | – | |
| Gene3D | 19 | 153 | 135 | 2.9E-38 | ||
| SUPERFAMILY | 24 | 142 | 119 | 2.62E-33 | ||
| SMART | 25 | 141 | 117 | 1.7E-23 | ||
| ProSiteProfiles | 26 | 145 | 120 | 19.309 | ||
| Pfam | 26 | 140 | 115 | 2.0E-24 | ||
| CDD | 28 | 141 | 114 | 6.9298E-62 | – | |
| Pfam | 173 | 397 | 225 | 6.4E-25 | ||
| Gene3D | 184 | 402 | 219 | 4.2E-42 | ||
| CDD | 187 | 397 | 211 | 3.24783E-53 | – | |
| SUPERFAMILY | 189 | 403 | 215 | 2.3E-11 | ||
| Coils | 320 | 347 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatidylinositol binding | Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
Expression pattern of LotjaGi5g1v0099300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…