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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0099300 |
| Transcript ID | LotjaGi5g1v0099300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp|Q9FG38|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr|C6TEZ3|C6TEZ3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0099300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17833188..17839873) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTCTTCTCAACTCAAGTTTCTTTCTTCTTCTTCTTCTCTCTCTGTTTCGAAGAACGTTGTTGTTGATGTTCATCAAA TTTGTAGAAGAATCACATCATCGCGATAATGGAACAGCAACAGAGAAGTCTCTCCGGTTCGTCATCGCAGAGCCCTAGAT CTCCGTCTTCCTCTCAACAACAACCGTTCCTCTCCGTCTCCGTCACCGATCCCGTCAAGCTCGGCAATGGCGTCCAATCC TACATCTCCTACCGCGTCATCACCAAAGTATTCATCTACTTCTCTTCTTTATTTATGCATTTTTGTTCCTTTTATTGGAA AATTCAATCCGAGTCCAGCTTTGATTTTTGTTTGTTGAGTTCGAGATGAGTGTAGAAATGATCAAATGGTGAGATCGTGA AAATCTTGGTTGTTTGTGTGATTGGTTTTGCTGAGAGGCTTGAAGTTCAGTTTGGGGGATTTTTTAAATTTTTTTTTATC AATGGTCATAACTCTTAAGTAATTAGATTATTAGGAATGATTAAATGCTAAGTGGCGATCCGTTTGTGAGGCGTTGTAGT TTGTAATGATTGGAATTGCGGCATTGCGATTTGTTAGAACTTAGAGATGTATGAAGAAGCTAAGCTCTCTTGGATTTGGA TGATGTTTTTTTTTTTAAATGCTTGCCTTGTGATTCTGTTGTCAATTTAGTACATTGTGATTTGCATTTATGCAGTAGTT GTGGTTAAGAATTGAGATGGGACATGCATGCTTGTTGATGATGCCTATTTCGAGCATATGATTACTGCTTTTCTTTTGGA GAACTTTTTGGTTTATGATTTTCCAGCTATGAAGCATGGGTACTCCATTTTGGTAACCGGGTACGTACCCGGTACCGTTG GGTACTTCATTATCTCATTCCCGGTACCGTATACCGGTACCACCGGTATTGTACCCGTATACGAGCAACATAGTTTTCCA GAAACAGAAAGTTCAAGGATGATGGACAATTTTCTATTAGCTGAAATATTGTCACACAATCTTAATTCTCGGACTACCCA TAGCTTGAGTATATTTATCGCATTAAAAGCTCTATATGAAAAATGAATAATTATTTCCTCCCTTATTTTCAATGTCAAGA TATCCTCTTTTGTCATTTATGAGTTTTAGCTCCACCAAATGCATTGGGTAGGTGTGTAACTCTAAACATGTGCCATGTCA TCATCTGACTATCTGAATCAATTTTTGGCAGACAAATTTTCCCGAATACCAGGGACCTGAGAAGATTGTCATCCGGCGAT ACAGTGACTTCATTTGGCTACGCGATCGCCTTTTTGAGAAGTACAAAGGCATTTTTATCCCCCCTCTTCCAGAGAAAAGT GCTGTAGGTAACATCTAAGAGTACTCTTACTTGCATGTTTAATAATAGTTTGAGACGTCCATTCGAATTTTTATGCCAAT GCTACCTTATAAATCTTTCAAAGCTTTATCTTCCTGCTTATGTTGATTTTCTGAAATTATTGTCTTTTGTTATTGTAATG AAAACATCTTAATTGAGGGGAACTGCTGTATTTTCCCATGTGAAAAAAAATTAAGATATTTTTCATTAAGTTAACTTTGG AAGCATCCGGTCATCTGTTTGCCTTTTTATTGTTGCAGAGAAATTTCGTTTCAGTGCTGAATTTATTGAGATGAGGCGTC AGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACAAAGTGAGGACCTGAGGGTGTTTTTGCAG GCAGAAGAAGAGGTGATGCCTCATGCCTCTATGCATCTGTATCTATCTTATATGTGATTGATTGGCTTTGTTGCTCTTAC TTTTCGTTTCTGCTTCCGTTGCTGTGCCATGTTACTCCACTGTTTGTTGTTTGATTCCAAATGTTCTAAACAGTTATCAG TATCTTACGATACATATCTCGATAAGATACAAATTCTTGAGGTAGTGATGCGTATCGCAGTGTTAATCTAAAATGAACCT GAATCTCATTTCTTATCTATGAGTTAGAGCTAAATTTTACAATTCACTAGTCCTTGTTGAATCTTACGATTCTAAATTGT GTGCATGTTGCACTTTAGTCGGGTTGTGTGGCCCATATAGGTTTCTGGTGTTTCTTGAGAAGAGTTTTTAAGTTTTTTGC ATGGCCCATATAGGTTGCGTGGCCCACACGACTAATATTGCTGTGACCTAGTGTTGACCTTGGGGATGATGAATGATTCA ATTAGTTAGCCGACTAACTATAGGAAGTAGGAAAGTAATTTGCATTTTGTCATCTTATTGATGTTTTTTGGAGGGTTTGA GTACTTAAATTTTGTGCAAGCACCCACAAATTTCCTTCTTATTTTGATTTATGGCTTGGATCTTGTATTATTTTAAGGTT AATTATATGATATATCAGCTTATGTTTCAATTTATGACTTAATTTTTTTGTACCATGTATCTTCCGATACATAAAAAGAT TGGATTCACGATTGGGAAAATAGGTCTTCCAATTTACGATTCGTATCTCAACTTAATAACCATTTCTATTTAGTCTAAGA CTTACATTTTGTCTACATTAATTGTTTTGTTTTGATGATGAGTTTGCTGAATTTACTGTCAAATGCATGATTCCAAATTT TATGACTTATATTAGTGATTGATATATGGAAAATTGAATTATGCCTTATGGTTGCTGATTCCATAACTACCTACCTTATA ATCACTGTACATGGTGGATAGTATGGGATATGTGATGTGCAAGACTTATAATACCTTTCCCATCCTCTCCCGTGTACGAT GTAGGTGTATCTGTCAGTGTTTTCAATCTCTTACTATAGCGCTACATTTGTTGTCAATCCCGGCGGGATCCTATCCCATC CCAGCGATAACCTGGGATAACTTTTCCCATTCCAGCCTAGAACGTTGTCGCTGCCAAAATCGTGGCCTATCCCGCACGGT CGTGATTCTCCGTTTTTTTTTTTCTTTCTGAACTCCTGTTTTCCTAAAATACCTTTAATATCAAAACATTGGGGATTATA TTTTAAGGGTATTTCTGGGTTTACCCTACGAGATAAAACCCTAAAATCTTCACACTCGCCAATTCCTTCTCACACAACTC TTTCAGGCTGCCCTTCCCTCTCTCTCTCTCCCCTTTCCCTCTCTCTCCTTCCCTCTCATCGCCGCTGATCTGTGAAGCAC CAGGACCAGCCGGCAACCACCGCGCGACTCTGGCGAGCTTCTTGTAAGGTAGTTTCTCCTTGCTTCTCCTCTCCTCTGTC ATGTTTTATTTCCTCTGCTCTGTTTTTCGTAGTTCCTCTCCTCTGTTCTCTTCTCTGTTCTCCTCTCTCTGTTATGACTT TAGTATTTAAGTAGCTCAGTATCGTGTATGATTTTCTTTTTAGTTCTAGCCCTATTAGGACTTTAATTGCTAGTTTGCTA CTATGAAAGTATGCATATATTATGAATTTCAAGTAACATTTATCATTGATTTAGTATGTACATATATATGGTATTATACA AAATATAGACAAAAATTCAATACCCCAGCTATTCCGCTTTCCGGGATCCGGCTAACCCAGTTTTGGGGCTGACTGGGACG GGCTGGGAACTGGGATTGATAACATAGGCGCTGCTGCAGTGGCGGAGCAGCTGTCTTCTGCGACAAAAAGGGGGATGGCG GAGCGCATCGCTGTCGCGACCTTGAAGGCGCGATTGCAGTCTGAGTCGCTGTCGTTGCGGCGCTATCAGTGTGCAGTGCT GCTTCTCTTTCAGGAAACCCTGTTTTACCCTTATAATGATACTGTTAGGGGAACATTTAAGGGTATAATGGGTAATTCAT GCTCAGGTTCTTCCCAGTGCGCAGCCCTTGATCTCCTTTCTTCCTTGAATCCAGCAAGCTGCAACTTTGACCTGACTCGA GGACTTCCGGCAAGCCTCCATCTCCCTTCTTCCTCCAGCATCCTTGCTACTCTGTTTTGTCTCTCTCTTATTTTATTTTT TTCCTTTCAGTCTTATTTCTCTGTTTTTTTTTTGGTCGACAGGGTTATTTCTATAAGTCTATATTGTATATCTTTTATCC CATTAGCGTCTATCTATTTTTAATATATCCCCATAGCCTCCCTGTTCTTTGACTATTAATTATGAATGTCTCAATTTCAT AAAATTTGAGTACCTTTTGTCATTTTTGAGCAATTATGTGTATATTATAGTTTATAGTTTTTATAAAATATATCGGAAAA TTCAGCTTAGTGGTCATCCCGCTATGCGCTATACTGCTATAGCGGTTTTGGGTCGGCCGCTACGTGCTGCTATCCGGAAT TGAAAACACTGGTATCTATTGTATTTGTATCTTATCTAGTTCTTCTCTTTTTATCACATTTGACTTTTAAGAGGTAAAAG AAAAATCTTATTAAAGCTTGATTTGATTATACATACTATGCAGACAATGGAAAGATTAAGGTCCCATGAGACTGGCATAT TCAAGAAGAAGCCAGCTGATTTAGTGCAGATATTTAAGGTAAGACATGTTTGAATGGTATTTTGGAATATTGATTCATTT TATTTTACTAGATTGAAGTCTGTTAATTGGAGTAATTTTAAAATTTGAATTCCAATAGTTTCCTGTCTGAAATAACCTGG CAAGGGGTGTTTTTTTAGTCCTTAGTCTTAGTAGCTAAATTATCAGAAATAATGAAAAGAAACATGATGTATTTTTTTAA ATATTTGATTTTGCTAACCTATCTGGTTGAGCGTGCTGTACGTTCAGGCGTTTTTTTCGATTTGTAATTGCTTATGTAAA TTCTGGCAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGAAGCCAGTGGAGGAATCAAATCCTGAATA TGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCATATCGTCTTGTGAAGA GGCATAGAGGTGATGTTTGAATTTAAGATTTCATTTTGGTAATTATTATTGTCTTCTGTGTCTATTTCACTTTCTGTTTT ACTCATCTATGCTTACTTTTACATTTTATCCACTCTTTTGGCTAGATTAATTCATAACAAAAATTGTAATTTATAACTCA TGCAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCCTCTGAAGGAAATGCTCTTGGGA AAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCAAAAGGAGGTAAGTGTCCAAGTGTTGGTG TCGTACGTTATTTTACTGGTTATTCATATATGGGTGCTTGCATGTTGAGAGGGGTGATAAGAACTATCCTAATATGACTC TGTCAAGCAGGCACAACAGCTCTTGATGGATTTTGAAGAACCTTTGAAAGATTATGTCCGTGCTGTACAATCTATTAAGG TAGGTCTAGTTTTTGTTTTCCTTCATTATTTAGTAAGTAAATTGTATAACCTGATTAAGATATTGTTTGTGAATTTTCCT TTGTTAAACAATTATTCAGATATTTGAATCCTAACATTTTTTCTTTTCCAACCGCCTTACCCTGAGAGTGAATGGATTGT TACACCTTATTTTTCAACTCAATACTCTTGTTTTACATTCTGAAACAGGCAACAATCGCAGAGAGGGCCAATGCCTTCAG GAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGATTAATCTGTATGGTTCTATTACTTGACTAACGTAGTTCG TAAGGCAGAATAATTTCTTTTTTACATAGCATTCCTTTCCCCCTACTAAAACCCTTGTGTGTATGTAAATGCAGATAAGC CTTGGTTGTGTCTTGTATTGTGGAATATGTAAAAATTCACTTAGTGTTTGGTAAATAGCGGGGTAAAAATCTCTCCACTG CAAGATTTGGGGATTTGAAGGGAATAGAAAATGATTTACAATTTAGGAACTGTATTGACTACAATATCCTTGTATATTTT TTAATTTTCAAAACAGTCCTTATGTATATTAATACCTAGCTATGCCCCCATGCTACTTCATGCTTCTTCACTCTCACATA GGTCAAGCCTTAGTTATATGCTTTTTTTATATCACTTCTTCTATTTTGTTTTATCACCTTCTAGAAGGATACATTTGTAA AATTACTGTTCTGTTGCCTCCCCTCCCCTTACACCCCAAACAATAGGAGGCTTATTTTCCTTCCCCTCTTCTCCCCTTTT GGCTGATGCCTGATTGTTTACAGAACCTAGAGGACTGACTACTTGGTGTTTTTATTCTGATTTAAATTTTTCGTTGTTGT TTCGAATCCAGTGACAAACTCATGTTGATTCGGTCTGATAGAGTTGCAGAAGCTGAACGTGAATATAACGAGGTAAATTT GCTAACATTTGGCATCCATTGATGAAAACTTATGCATACAGTTTGTTGGCTGGACTGATATGATTTTGTCATACAGTTGA AGGCAGAGAGTGAACAAGCAACAAAGACATTTGAGACAATTGTAAAGTTAATGAATGAAGAAATAGGGCGTTTCCAAGAA CAGAAAACACTAGATATGGGAATCGCTTTCCATGAATTTGCTAAAGGCCAGGCACGTCTTGCAAACGGTATTGCAGAAGC GTGGCGAAGTCTGCTTCCTAAACTGGAAGCATGTTCCTCCTCATAA
CDS sequence (LotjaGi5g1v0099300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAGCAACAGAGAAGTCTCTCCGGTTCGTCATCGCAGAGCCCTAGATCTCCGTCTTCCTCTCAACAACAACCGTT CCTCTCCGTCTCCGTCACCGATCCCGTCAAGCTCGGCAATGGCGTCCAATCCTACATCTCCTACCGCGTCATCACCAAAA CAAATTTTCCCGAATACCAGGGACCTGAGAAGATTGTCATCCGGCGATACAGTGACTTCATTTGGCTACGCGATCGCCTT TTTGAGAAGTACAAAGGCATTTTTATCCCCCCTCTTCCAGAGAAAAGTGCTGTAGAGAAATTTCGTTTCAGTGCTGAATT TATTGAGATGAGGCGTCAGGCTTTGGATATATTTGTAAATAGGATAGCATCACATCATGAACTTCAACAAAGTGAGGACC TGAGGGTGTTTTTGCAGGCAGAAGAAGAGACAATGGAAAGATTAAGGTCCCATGAGACTGGCATATTCAAGAAGAAGCCA GCTGATTTAGTGCAGATATTTAAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTTGGGAAAGAGAAGCCAGTGGAGGA ATCAAATCCTGAATATGAAAAGCTGAAACATTATATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCAT ATCGTCTTGTGAAGAGGCATAGAGAGTTGGGACAATCGCTGGCAGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCCTCT GAAGGAAATGCTCTTGGGAAAGCATTCTCTGAACTTGGGATTAAGTCAGAGATTTTATCTGCCAAGCTGCAAAAGGAGGC ACAACAGCTCTTGATGGATTTTGAAGAACCTTTGAAAGATTATGTCCGTGCTGTACAATCTATTAAGGCAACAATCGCAG AGAGGGCCAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACATTGAAGGCAGAGAGTGAACAAGCAACAAAGACATTT GAGACAATTGTAAAGTTAATGAATGAAGAAATAGGGCGTTTCCAAGAACAGAAAACACTAGATATGGGAATCGCTTTCCA TGAATTTGCTAAAGGCCAGGCACGTCTTGCAAACGGTATTGCAGAAGCGTGGCGAAGTCTGCTTCCTAAACTGGAAGCAT GTTCCTCCTCATAA
Protein sequence (LotjaGi5g1v0099300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQQQRSLSGSSSQSPRSPSSSQQQPFLSVSVTDPVKLGNGVQSYISYRVITKTNFPEYQGPEKIVIRRYSDFIWLRDRL FEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQALDIFVNRIASHHELQQSEDLRVFLQAEEETMERLRSHETGIFKKKP ADLVQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGQSLADFGKAVKLLGAS EGNALGKAFSELGIKSEILSAKLQKEAQQLLMDFEEPLKDYVRAVQSIKATIAERANAFRRQCELAETLKAESEQATKTF ETIVKLMNEEIGRFQEQKTLDMGIAFHEFAKGQARLANGIAEAWRSLLPKLEACSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 2 | 310 | 309 | 1.0E-130 | ||
| PANTHER | 2 | 310 | 309 | 1.0E-130 | – | |
| Gene3D | 19 | 153 | 135 | 2.5E-38 | ||
| SUPERFAMILY | 24 | 142 | 119 | 2.22E-33 | ||
| SMART | 25 | 141 | 117 | 1.7E-23 | ||
| Pfam | 26 | 140 | 115 | 1.7E-24 | ||
| ProSiteProfiles | 26 | 145 | 120 | 19.309 | ||
| CDD | 28 | 141 | 114 | 2.96928E-62 | – | |
| Pfam | 173 | 318 | 146 | 1.9E-15 | ||
| Gene3D | 184 | 374 | 191 | 9.3E-32 | ||
| CDD | 187 | 369 | 183 | 1.13199E-42 | – | |
| SUPERFAMILY | 189 | 375 | 187 | 1.26E-11 | ||
| PANTHER | 308 | 376 | 69 | 1.0E-130 | – | |
| PANTHER | 308 | 376 | 69 | 1.0E-130 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatidylinositol binding | Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
Expression pattern of LotjaGi5g1v0099300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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