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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0119600 |
| Transcript ID | LotjaGi5g1v0119600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G46680.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915; TrEMBL-Plants: tr|A0A1J7HF75|A0A1J7HF75_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0119600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:24999430..25002003) extracted from Lotus japonicus Gifu genome v1.2.
GGGGATCCGAACGCTTCCCAGTAGAAGCATGTTTTCACGATTCTCTGCAGATGCAAACGTAAGAAGTAAGAACTTTCGAA GTTTTCCAGGTCGTGTCTTATGAACTTGTCTGCTGCACCTGCACTTCACTTCAATGCTGCTTACCCCTTCACTCACCCTG CGATTCTCAACCACGAGAACCCCATCACCTCATTCCTCACGCAACGCATTACTCACTCAAAGAATGTGACTTTCCGAATA ATGGTTAAGGGGAGGAGTCTATCCACCAAGTTCCTCAACATCTGCATTGCCTCAATGTGCAAGGCCAAGCAACTCGACAA AGCCGAATGCGTCTTAATCGACGGTGTAAAGCTCGGCGTCCTCCCTGACGTTGTCACCTTCAACACCCTGATAGACGCGT ATTGCCGTTTCGTAAGCTTCGACGCCGGCTGCGAGGTTCTGGAGAGAATGAAGGAGGCAGGATTAACCCCTGACGTGATT TCCTACAACTCGTTGATGTCTGGTGCTGTTAGAAAAGGCCTTTTTCCAATGACCCTCCACATGTTCGACAAAATGATTGA GTCAGAGATACGCCCCGACGTGTGGAGCTATAACATCCTCATGCATTGTTATTTCCGGCTGGGAATGCCTGATGAGGCAA ACCGTGTTTTCAAGGATGTGCTTCTTAGCGCGGAGACTGACCCGAGCACTGCGACGTACAATGTCATGATTAATGGCCTA TGCAAGAATGGTTATGTGCACAACGCGCTGTCGATGTTCAGGAACCTCCAGAGGCGTGGGTTTGTCCCTGAGGTTCTGAC TTACAACGCGCTGATTAACGGGCTATGCAAGGCGCGGAGGGCGAACGAGGCGAGGAGGTTGCTTAGTGAGTTCCGTGAGG CGGGGCATGAGCCGAACGCGATTACTTTCACTACGGTCATGAATTGCTGCTTCCGGTGCGGGCGGTTGGAGCAGGGCTTG GAGATTTTGACGGAGATGAGGAGCAAAGGCTACACGTTCGACGGCTTCGCGTATTGCACGGTGGTTGCCGCGTTGGTGAA GACTGGAAGGGTCGTAGAAGCCGATGAGATCGCGGAGCAGATGATGAGCAATGGCGTGGAGCCGGATTTGGCATCTTATA ACACGATGATATACCTCTATTTCAGGCAAGGGAGGGTGGATGAAGCATTGGAGTTGGTGGATCAGATTGAGAAAGAAGGA CCCGGTAATGATCAGTACACGCATACTATTATCATACATGGTTTGTGTAAGGCTAAAAGATTGAACGAGGCTGTGCAGCA CTTAGACCACATGAACTCGTTAGGGTTTGGTTTTAACCTCGTGGCATCGAATTGCGTGCTTGATGGGTTGGGGAAAGCTG GTCACATTGATCGTGCTTTGAAGTTTTTTGAAGGCATGGAGGTTAGGGACTCTTTTACTTACACAATCTTGGTGCACAAT CTTTGCAGGGCTAGGAGGTTCCTCTGTGCCTCCAAACATTTGGTCGCTTGTTTGCAATGTGGTTTTCAGGTGCTGAAGGC CACTCGGCGAGCTGTTATTGATGGTTTGATTAGTGATGGGTTGAAGAATGAAGCAAAGAAAGTTAGGTTGAAAATACGGA AGGCTCAGTTGTTGCGTTGAATTGGAATTGCAGATTGTTGCCTTGAGCTTTGGATGTATGTGTGTGCATTGCTGGAAGAA CCTTTGTTGAGCTAACAAAAGAATGAAACATTGATTCTCATCCATTAGCGCCGTGATTTGATCGCCATGACCAGCACTCG ACGGAGATTGTTATCATTATGCTACAAGGCATTTGGTGATTTAGTAAGCAAACCGCTATGGGTGTGTTTGTTTTCATGTT GCAATGCCACATTCCATGTAGGATTTCTGATTTCAAATGCACATTGGACAGATCTCACTTGTTGGATTGCCTGAGCGTAC ATTCACGTCCCTCAAACAGTTATCAAACAAGCACTATATCTTTTAGTGATTTTTGCTTTGCCTGTTGGAAAAGATGCCTT TGTTATATTGTAATTGCTTAGTGATATTGACTAATAAAGTTGAAGTTCTCATGAGTGAGATGGATACTATAACAGGAAAA CACAAAATTTGAATGAATTCAAAATGACAATTTCATTCTTGGGGACATGATGATGTGGCTATTCAGATATTTGAAGATTC TCTCTACTGCTGTATGGAACACATGGTATTGGTGAAAACTGGGAAGCATTTTGTATTCTCCAGTCCTTCATCCACTAACC CTTCTGGAAGCTAGTAAGTGTATCAGTCTCAAATAAATATATGTTCCTATAAATGGTGTGGTCAATTGTTCTACTGAGTT GTGATCCTATGGAAAGTCTTGCGTAGAAATTCCTGTCAGGGATTATTTATTACAATTTTATATATTTTGTATTCCGCTTG TCTACCGACTACCGGGGAACAACTATCAAAGTTGAGAATCATTCTACAGGGGAACTCTCCTAATGATAAAATTGAGTTTT GGAATGAAAATGTATTGAATTTGCTATACAGTATAAAATACCATACTTCAAGTAAGTTTTTCTTTTTGTGTATGGTTTGC ATTATTTGACCAGC
CDS sequence (LotjaGi5g1v0119600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTGTCTGCTGCACCTGCACTTCACTTCAATGCTGCTTACCCCTTCACTCACCCTGCGATTCTCAACCACGAGAA CCCCATCACCTCATTCCTCACGCAACGCATTACTCACTCAAAGAATGTGACTTTCCGAATAATGGTTAAGGGGAGGAGTC TATCCACCAAGTTCCTCAACATCTGCATTGCCTCAATGTGCAAGGCCAAGCAACTCGACAAAGCCGAATGCGTCTTAATC GACGGTGTAAAGCTCGGCGTCCTCCCTGACGTTGTCACCTTCAACACCCTGATAGACGCGTATTGCCGTTTCGTAAGCTT CGACGCCGGCTGCGAGGTTCTGGAGAGAATGAAGGAGGCAGGATTAACCCCTGACGTGATTTCCTACAACTCGTTGATGT CTGGTGCTGTTAGAAAAGGCCTTTTTCCAATGACCCTCCACATGTTCGACAAAATGATTGAGTCAGAGATACGCCCCGAC GTGTGGAGCTATAACATCCTCATGCATTGTTATTTCCGGCTGGGAATGCCTGATGAGGCAAACCGTGTTTTCAAGGATGT GCTTCTTAGCGCGGAGACTGACCCGAGCACTGCGACGTACAATGTCATGATTAATGGCCTATGCAAGAATGGTTATGTGC ACAACGCGCTGTCGATGTTCAGGAACCTCCAGAGGCGTGGGTTTGTCCCTGAGGTTCTGACTTACAACGCGCTGATTAAC GGGCTATGCAAGGCGCGGAGGGCGAACGAGGCGAGGAGGTTGCTTAGTGAGTTCCGTGAGGCGGGGCATGAGCCGAACGC GATTACTTTCACTACGGTCATGAATTGCTGCTTCCGGTGCGGGCGGTTGGAGCAGGGCTTGGAGATTTTGACGGAGATGA GGAGCAAAGGCTACACGTTCGACGGCTTCGCGTATTGCACGGTGGTTGCCGCGTTGGTGAAGACTGGAAGGGTCGTAGAA GCCGATGAGATCGCGGAGCAGATGATGAGCAATGGCGTGGAGCCGGATTTGGCATCTTATAACACGATGATATACCTCTA TTTCAGGCAAGGGAGGGTGGATGAAGCATTGGAGTTGGTGGATCAGATTGAGAAAGAAGGACCCGGTAATGATCAGTACA CGCATACTATTATCATACATGGTTTGTGTAAGGCTAAAAGATTGAACGAGGCTGTGCAGCACTTAGACCACATGAACTCG TTAGGGTTTGGTTTTAACCTCGTGGCATCGAATTGCGTGCTTGATGGGTTGGGGAAAGCTGGTCACATTGATCGTGCTTT GAAGTTTTTTGAAGGCATGGAGGTTAGGGACTCTTTTACTTACACAATCTTGGTGCACAATCTTTGCAGGGCTAGGAGGT TCCTCTGTGCCTCCAAACATTTGGTCGCTTGTTTGCAATGTGGTTTTCAGGTGCTGAAGGCCACTCGGCGAGCTGTTATT GATGGTTTGATTAGTGATGGGTTGAAGAATGAAGCAAAGAAAGTTAGGTTGAAAATACGGAAGGCTCAGTTGTTGCGTTG A
Protein sequence (LotjaGi5g1v0119600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSAAPALHFNAAYPFTHPAILNHENPITSFLTQRITHSKNVTFRIMVKGRSLSTKFLNICIASMCKAKQLDKAECVLI DGVKLGVLPDVVTFNTLIDAYCRFVSFDAGCEVLERMKEAGLTPDVISYNSLMSGAVRKGLFPMTLHMFDKMIESEIRPD VWSYNILMHCYFRLGMPDEANRVFKDVLLSAETDPSTATYNVMINGLCKNGYVHNALSMFRNLQRRGFVPEVLTYNALIN GLCKARRANEARRLLSEFREAGHEPNAITFTTVMNCCFRCGRLEQGLEILTEMRSKGYTFDGFAYCTVVAALVKTGRVVE ADEIAEQMMSNGVEPDLASYNTMIYLYFRQGRVDEALELVDQIEKEGPGNDQYTHTIIIHGLCKAKRLNEAVQHLDHMNS LGFGFNLVASNCVLDGLGKAGHIDRALKFFEGMEVRDSFTYTILVHNLCRARRFLCASKHLVACLQCGFQVLKATRRAVI DGLISDGLKNEAKKVRLKIRKAQLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 36 | 190 | 155 | 1.3E-33 | ||
| ProSiteProfiles | 55 | 89 | 35 | 7.136 | ||
| PANTHER | 59 | 259 | 201 | 2.5E-105 | – | |
| Pfam | 89 | 135 | 47 | 5.1E-12 | ||
| ProSiteProfiles | 90 | 124 | 35 | 12.54 | ||
| TIGRFAM | 92 | 126 | 35 | 2.7E-7 | ||
| ProSiteProfiles | 125 | 159 | 35 | 11.027 | ||
| TIGRFAM | 127 | 161 | 35 | 5.9E-6 | ||
| Pfam | 157 | 185 | 29 | 1.6E-5 | ||
| ProSiteProfiles | 160 | 195 | 36 | 10.216 | ||
| TIGRFAM | 163 | 186 | 24 | 7.6E-6 | ||
| Gene3D | 191 | 298 | 108 | 2.1E-33 | ||
| Pfam | 195 | 244 | 50 | 4.2E-16 | ||
| ProSiteProfiles | 196 | 230 | 35 | 13.022 | ||
| TIGRFAM | 199 | 230 | 32 | 1.9E-9 | ||
| PANTHER | 217 | 365 | 149 | 2.5E-105 | – | |
| ProSiteProfiles | 231 | 265 | 35 | 12.419 | ||
| TIGRFAM | 234 | 267 | 34 | 1.7E-9 | ||
| Pfam | 262 | 294 | 33 | 3.8E-6 | ||
| ProSiteProfiles | 266 | 300 | 35 | 11.257 | ||
| TIGRFAM | 268 | 299 | 32 | 4.2E-7 | ||
| SUPERFAMILY | 269 | 374 | 106 | 2.73E-6 | ||
| Gene3D | 299 | 367 | 69 | 9.3E-15 | ||
| ProSiteProfiles | 301 | 335 | 35 | 10.939 | ||
| TIGRFAM | 304 | 336 | 33 | 3.9E-7 | ||
| Pfam | 304 | 333 | 30 | 0.017 | ||
| Pfam | 335 | 384 | 50 | 4.8E-12 | ||
| ProSiteProfiles | 336 | 370 | 35 | 10.819 | ||
| TIGRFAM | 339 | 367 | 29 | 4.3E-7 | ||
| PANTHER | 351 | 497 | 147 | 2.5E-105 | – | |
| Gene3D | 370 | 504 | 135 | 1.4E-17 | ||
| ProSiteProfiles | 371 | 405 | 35 | 9.832 | ||
| TIGRFAM | 373 | 403 | 31 | 2.1E-4 | ||
| ProSiteProfiles | 406 | 440 | 35 | 8.539 | ||
| Pfam | 410 | 436 | 27 | 0.002 | ||
| TIGRFAM | 411 | 436 | 26 | 1.8E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0119600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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