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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0146300 |
| Transcript ID | LotjaGi5g1v0146300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; TrEMBL-Plants: tr|G7I998|G7I998_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi5g1v0146300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37133318..37135737) extracted from Lotus japonicus Gifu genome v1.2.
TTCCACACTAACTATTCCCTACGCATGCTTCGCGCAAGACATGTCCATATCCATGTCTCACCTTCCACACACAAGAACTT CATCCAACAACTACCTCTACTATCGTTCCTTTCATACTCTCGACTCCTTCTCAGCACTCTCAGTTTCTCCCCTCATCTTC AACAACCACTTCTACAAATGGCCCTTTGCGGCCACGACATGAAGTTCAAAGGCTACAACGCACTCTTGAACGAGTGCGTG AGCAAGAGGGCCTTAAGAGAAGGCCAGAGAGTCCATGCCCACATGATCAAAACTCGTTATCTTCCTTCTGTGTTCCTCAG GACGAGGTTGATCGTGTTGTATACGAAATGTGACTCTTTAAGAGATGCTCGGCACGTGTTCGATGAAATGCCTGAACGGA ATGTGGTGTCGTGGACGGCTATGATTTCAGCTTATTCTCAGAGAGGGTATGCCTCTCAAGCCTTGAATCTTTTTGTCCAG ATGTTAAGATCAGGTATTCTTGGTTTGCACGAGCTCATGAGAGTGGGTATACCTTTTTCATAATGCAATTTGAATGCTTG ATTTTGTTTTTTAAGTATTGGTTATACGTGGGAGGGGATGTAAGGTTACTTGTTACGCCCAAGTTGATAATTTAGACTTT TTTAGTATGTATAATAATGGTGAAGATTGAAAATGTAATCTCATGTGAACTATCTAAACTCCCATTACTGGCACAATCCT AGTGGCTTGACAATTTAGAATTCAAATGTTAAGATTCTTGATTACCAATAACTAATGTTGATAGAATCTTCATTGAATTT GAAGAACCTATCGAGCCTGTAATAATCATGTTGTGAGGAGAAACTAAAAGATGCAGATTGTATTTTCTTTTCTGAATGTA TTGGCTTCAGGATTTCTATTTTGATATTTTTGGGTTCCTTTTGAGTTTTGTCCCACTGGTTTCTGTGTGCTGATGATATG TATGCCTTTCTGCAGGGACAGAACCTAATGAGTTCACTTTTGCTACAGTGCTTACGTCATGTACAAGTTCTCTGGATTCC ATGCTAGGGAGGCAAATCCACTCTCTTATCATAAAATCAAATTATGATGCCCATGTTTATGTAGGAAGCTCACTCCTTGA CATGTATGCCAAAGATGGTAAAATTCATGAAGCTCGAGGCATTTTTGAATGTTTGCCAGAAAGAGATGTTGTTTCCTGTA CTGCTATAATCTCTGGATATGCTCAACTGGGTCTGGATGAAGAGGCATTGGATCTTTTTCGCCAGTTGCGAGGAGAAGGA ATGCAATCAAATTATGTTACTTATGCTAGTGTTTTAACTGCCCTTTCTGGGCTTGCTTCTCTAGATCATGGCAAGCAAGT GCACAACCATGTTCTTCGCTCTGAAGTTCCCTCATATGTAGTTCTTCAAAACTCTTTGATTGACATGTACTCAAAATGTG GAAACCTCACTTACTCAAGAAGGATATTTGATACCATGCAGGAGAGAACTGTTATGTCTTGGAATGCAATGCTGGTCGGG TATGGAAAACATGGAGAGGGAAGAGAAGTGCTTGAGCTGTTTACTTTAATGAGAGAAGAAAACGAAGTAAAACCTGACGG TGTCACAATGTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGATTGGAAGACAGAGGACTTGATATTTTTTACGATATGA CCAGTGGAAAAATTGGAGTTGAGCCAAAGAAGGAGCACTATGGGTGTGTTGTTGATTTGCTTGGCCGTGCCGGTCGAGTA GAAGAAGCGTTTGAATTCATAAAAAAGATGCCTTTTGAACCAACAGCTGCAATATGGGGTTCCCTTTTAGGTGCTTGTAG TGTTCATTCAAATGTTGACATTGGTGTATTTGTGGGTCATCGGCTTCTAGAAATTGAGCCTGGAAATGCTGGAAATTATG TTATTCTGTCTAACTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGGGACATGATGTTGAAGAAGGCA GTGATGAAAGAGCCTGGAAGAAGCAGGATTGAGCTTGATCAAGTACTTCATACTTTCCATGCTAGTGATCGTTCTCATCC AAGAAGAGAAGAGGTCTATATTAAAGTGAAGGAATTATCAGTTAGATTTAAAGAAGCTGGTTATGTTCCTGATTTGAGTT GTGTTTTACACGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTCGGCCATAGTGAAAAGTTGGCCTTGTCTTTTGGA CTAATTTCTACTCCAGAAGGTGTGCCAATCCGTGTCATTAAAAATCTCCGTATTTGTGTTGACTGCCATAATTTTGCTAA ATATATCTCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCAAATTGTTGGAGGAAAATGTT CCTGTGGAGATTACTGGTGA
CDS sequence (LotjaGi5g1v0146300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCGCGCAAGACATGTCCATATCCATGTCTCACCTTCCACACACAAGAACTTCATCCAACAACTACCTCTACTATC GTTCCTTTCATACTCTCGACTCCTTCTCAGCACTCTCAGTTTCTCCCCTCATCTTCAACAACCACTTCTACAAATGGCCC TTTGCGGCCACGACATGAAGTTCAAAGGCTACAACGCACTCTTGAACGAGTGCGTGAGCAAGAGGGCCTTAAGAGAAGGC CAGAGAGTCCATGCCCACATGATCAAAACTCGTTATCTTCCTTCTGTGTTCCTCAGGACGAGGTTGATCGTGTTGTATAC GAAATGTGACTCTTTAAGAGATGCTCGGCACGTGTTCGATGAAATGCCTGAACGGAATGTGGTGTCGTGGACGGCTATGA TTTCAGCTTATTCTCAGAGAGGGTATGCCTCTCAAGCCTTGAATCTTTTTGTCCAGATGTTAAGATCAGTGCTTACGTCA TGTACAAGTTCTCTGGATTCCATGCTAGGGAGGCAAATCCACTCTCTTATCATAAAATCAAATTATGATGCCCATGTTTA TGTAGGAAGCTCACTCCTTGACATGTATGCCAAAGATGGTAAAATTCATGAAGCTCGAGGCATTTTTGAATGTTTGCCAG AAAGAGATGTTGTTTCCTGTACTGCTATAATCTCTGGATATGCTCAACTGGGTCTGGATGAAGAGGCATTGGATCTTTTT CGCCAGTTGCGAGGAGAAGGAATGCAATCAAATTATGTTACTTATGCTAGTGTTTTAACTGCCCTTTCTGGGCTTGCTTC TCTAGATCATGGCAAGCAAGTGCACAACCATGTTCTTCGCTCTGAAGTTCCCTCATATGTAGTTCTTCAAAACTCTTTGA TTGACATGTACTCAAAATGTGGAAACCTCACTTACTCAAGAAGGATATTTGATACCATGCAGGAGAGAACTGTTATGTCT TGGAATGCAATGCTGGTCGGGTATGGAAAACATGGAGAGGGAAGAGAAGTGCTTGAGCTGTTTACTTTAATGAGAGAAGA AAACGAAGTAAAACCTGACGGTGTCACAATGTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGATTGGAAGACAGAGGAC TTGATATTTTTTACGATATGACCAGTGGAAAAATTGGAGTTGAGCCAAAGAAGGAGCACTATGGGTGTGTTGTTGATTTG CTTGGCCGTGCCGGTCGAGTAGAAGAAGCGTTTGAATTCATAAAAAAGATGCCTTTTGAACCAACAGCTGCAATATGGGG TTCCCTTTTAGGTGCTTGTAGTGTTCATTCAAATGTTGACATTGGTGTATTTGTGGGTCATCGGCTTCTAGAAATTGAGC CTGGAAATGCTGGAAATTATGTTATTCTGTCTAACTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGG GACATGATGTTGAAGAAGGCAGTGATGAAAGAGCCTGGAAGAAGCAGGATTGAGCTTGATCAAGTACTTCATACTTTCCA TGCTAGTGATCGTTCTCATCCAAGAAGAGAAGAGGTCTATATTAAAGTGAAGGAATTATCAGTTAGATTTAAAGAAGCTG GTTATGTTCCTGATTTGAGTTGTGTTTTACACGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTCGGCCATAGTGAA AAGTTGGCCTTGTCTTTTGGACTAATTTCTACTCCAGAAGGTGTGCCAATCCGTGTCATTAAAAATCTCCGTATTTGTGT TGACTGCCATAATTTTGCTAAATATATCTCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATC AAATTGTTGGAGGAAAATGTTCCTGTGGAGATTACTGGTGA
Protein sequence (LotjaGi5g1v0146300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRARHVHIHVSPSTHKNFIQQLPLLSFLSYSRLLLSTLSFSPHLQQPLLQMALCGHDMKFKGYNALLNECVSKRALREG QRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLRDARHVFDEMPERNVVSWTAMISAYSQRGYASQALNLFVQMLRSVLTS CTSSLDSMLGRQIHSLIIKSNYDAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQLGLDEEALDLF RQLRGEGMQSNYVTYASVLTALSGLASLDHGKQVHNHVLRSEVPSYVVLQNSLIDMYSKCGNLTYSRRIFDTMQERTVMS WNAMLVGYGKHGEGREVLELFTLMREENEVKPDGVTMLAVLSGCSHGGLEDRGLDIFYDMTSGKIGVEPKKEHYGCVVDL LGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACSVHSNVDIGVFVGHRLLEIEPGNAGNYVILSNLYASAGRWEDVRSLR DMMLKKAVMKEPGRSRIELDQVLHTFHASDRSHPRREEVYIKVKELSVRFKEAGYVPDLSCVLHDVDEEQKEKILLGHSE KLALSFGLISTPEGVPIRVIKNLRICVDCHNFAKYISKIYGREVSLRDKNRFHQIVGGKCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 51 | 170 | 120 | 8.3E-20 | ||
| ProSiteProfiles | 60 | 94 | 35 | 7.432 | ||
| PANTHER | 64 | 161 | 98 | 3.9E-101 | – | |
| ProSiteProfiles | 95 | 125 | 31 | 6.763 | ||
| Pfam | 102 | 127 | 26 | 0.24 | ||
| ProSiteProfiles | 126 | 160 | 35 | 9.876 | ||
| Pfam | 128 | 155 | 28 | 9.7E-6 | ||
| TIGRFAM | 128 | 156 | 29 | 8.6E-4 | ||
| PANTHER | 155 | 274 | 120 | 3.9E-101 | – | |
| SUPERFAMILY | 168 | 341 | 174 | 9.96E-5 | ||
| ProSiteProfiles | 185 | 215 | 31 | 6.84 | ||
| Gene3D | 212 | 283 | 72 | 1.7E-6 | ||
| ProSiteProfiles | 216 | 250 | 35 | 10.665 | ||
| Pfam | 216 | 262 | 47 | 2.2E-7 | ||
| TIGRFAM | 218 | 249 | 32 | 1.1E-4 | ||
| ProSiteProfiles | 251 | 285 | 35 | 6.763 | ||
| PANTHER | 268 | 489 | 222 | 3.9E-101 | – | |
| ProSiteProfiles | 286 | 316 | 31 | 7.476 | ||
| Pfam | 291 | 316 | 26 | 0.017 | ||
| Gene3D | 291 | 525 | 235 | 1.9E-36 | ||
| ProSiteProfiles | 317 | 351 | 35 | 9.514 | ||
| Pfam | 320 | 348 | 29 | 4.8E-6 | ||
| TIGRFAM | 320 | 353 | 34 | 3.4E-6 | ||
| ProSiteProfiles | 353 | 387 | 35 | 6.873 | ||
| ProSiteProfiles | 390 | 424 | 35 | 7.454 | ||
| Pfam | 393 | 417 | 25 | 0.004 | ||
| TIGRFAM | 394 | 417 | 24 | 0.0019 | ||
| ProSiteProfiles | 456 | 490 | 35 | 7.717 | ||
| Pfam | 460 | 486 | 27 | 0.57 | ||
| Pfam | 492 | 614 | 123 | 1.6E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0146300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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