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LotjaGi5g1v0147300.2

Overview

Field Value
Gene ID LotjaGi5g1v0147300
Transcript ID LotjaGi5g1v0147300.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A072VIA3|A0A072VIA3_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi5g1v0147300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:37623176..37627274) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCCTACACAAAAGTCAGTGGAATGGT TTCTACCCTTGGAGATCCGTTCACTCGAATTATCAGTCCAAAGGTCTTGCACTGCAACTAAAATTTGCTTTTCTGGAATC TCAATCTTGTTTTCTTGGTCAATAGAAAAAGCAGTAACTAGAGATATGATCACATATCCTTGTCTATGTTACCTCTTCTG GTGTGTAGCTTCCATATGAAATGGACTATTCTTATAAAACTTTTTAAGATAACAAGTCTATTTTTAAAATCGGACTTTTT TTTATAATTAATTTTAACAGTTATCATACTAACAGGAATACCAAGGATTTAGAATTGGAAGTGATGGGAACTTACAAGGA GTAGGCCTCTTCATAAATGTTGAACCAAGAACGGGACATTTGGTTAGTGACTTGTGAAAAACACTAAATTTTCAGCAATC AAATACATTCAAGTTTTATGGTGATTGTTCTCAGGTCATTTGATTATGTAATTCAGCTCTGCCTGGTTTCATTTTCTCAT TTAAATTTCTCTGCCACTACAGAACTAGATATTGATTATGACAATGCACCTCTTTCTCATTTGAATTATGATATTCTGAA AAAAATGAATTTGCAGGTTGTTTTGTCATGTATAGAAGGCAGTCCGGCTGCGCGTGCTGGTATACATCAAGGAGATGAAT TGGTTGAGATAAATGGTACTGACCAAGTATCTGAATCTTTTCTCATTTGTGAAGCTATTTAATTATAGTTTTCTAATTAT TGAATACTACTACTGAATGTATCACATTAATTGGACTCTCTCTCCCTTTCAATTCTCCAATTCAGTAGGTTAAGGTTAAT CTTGAGAAGTTAATATAAATTGAGAATGGACGTGAGAGAGTTATTTAGTTCTTATAATAAGGACGGGGTTGTATTTTAGA TCTTAAGTGAAATGAGTAATTTTACTTGGAAATATTTTGATTTTGCAGGGGAGAGTGTTGATGGCATTGATAGTGAGGCT GCAGCACAGAGGCTTCGAGGGAATGCTGGAACAACAGTAACAGTAAAGGTTCATTGTGAAATCATCATACTTCCATTTTT TTCGTATAAGCTTTATTTGAACTAGAGATATGCCTCTGAAAAGGTTTCATAGATACCTTTGAAACGTTGATATTTTTGTT GAAAATGGTTCAATTTTCAGCCTTTATTTATTTTGCTTTTTACTGGGGTTAAGGATAATTTCAATCTTGATTCTTTATAA AAATGGGCACTGATGTATGAGAGAGGGTGCTTTAGAATTTTTCTGCAGTTGTTGAGAAATGAGAAGTCTCACGTTGACTG GCCATATAAGTGTTTATAAAGGGTAGAGGAACCCTCACCTCTAAGCTAGCTTTTGGGGTAGAGTTAGGCCTCCCTAATTC TAATAGTAGCTAAAATCTTTCATTCCTTAGTGGCTTTCTTGAGAATTTGAGCATTGTTCTAGAAACTAACTTTTAAAGCT TTTCTTCTCCAGGTCAAAAACTCAGGGAGAAGCTCTTACATCCGGGAGGTAATGTTGACTTATTTCTTCTACTTATGTTC TTATGATTCATGAAATGTCAACTTATTTCTTCTACACTTCTTATGTTGTTACTTTATGCAAAAGCATTTATGTGACAAAC TTTTCCCCTTTTATTTTGATTTTAAATTCACAAAACTAAAATATACCTGAAGGTCAAACTTCCAAGGGAGTGTATCAAGC TCTCTCCAATATCCAGTGCCATCATCCCTCATAGATCCCCCGAAGGGCAGGCGATAAAAACTGGCTATGTGAAACTGTCA ACCTTCTCTCAGGTGAGCAAAACAATCAGCTATAAAAAAAAATTGCAATCTGTACATAGTTAAACTTGAAAAGGTAAAAT ATATCAGGGTGTTGCTCCAGTACTCATTGAAAATGGGAGATATAGTACCTTTAGTTCATTTTTTAGCATCCAAAGGACAA GATTGTAGATTAAAAAAAATTACTTATGGAGAAAACATGATTAAAGGTATGGAACCCTTCACTTTTAGAGGGGTACCAAA GAAATTGTCAATATATAATTCAACTACCATTAATTGCTTGGACCTTAATTATTTTAATGTTTATTATATGACAGATCAAC TTATGTTTCATTTTCCTTAAGGAAAGATTAGATTCAGGATTCGGAAAATCGGTCTTCCGATTCACAATTCAAATATTCAG TCGCCATGTTACAGTATGAACTTTTCCTGTTCCTTCTTGACAGACTGCTGCTGAAGACATGGAGAATGCTATTCAGGACA TGAAGAATCAAGGAGTACACTCATACATACTAGATCTACGGAACAATCCTGTAATTTACTTCTATGATGAAAAGTTTCAA TGTTATCATCTCTGAAACAATTGAACTTAGAAGTGTTTTCCTCCTTTTCTTTCTGTAATTTCATTGCAGGGTGGTTTGGT AAAAGCTGGTCTTGATGTTGCCCAGATGTGGTTAGATGGAGATGAAACTCTAGTGAATACAATCGATAGAAGCGGGGATG TTTTACCAATTAACATGGTCAATGGACATGCTATAACACATGATCCACTTGTGGTGATAGTGAGTACTAACTTTCGGCAT AGACTATGCATTTTAATAATAAAATATTTTAATGAGTCAAAAAATGCTAACTTCAGTATTTGATGTTGCAATTGGTACCC AAATAAATTCCTTAAATGTATTCCTGTATGACCATGCTCCTATGTTAGCAAAGGTTCATTATCAACAACTCACCTTTATG CCTAGAATCCTTTACCATTCAACTATATAGTAAATATGAGTCTGTCAAATCTTGGGTTTCCATAAGCATTAAAATTACCT TTTGTAGAAATTACTAGTTCAATGAACTACATTTTTTCAATCCTTAACAGGTCAATGAGGGAAGTGCAAGTGCCAGCGAG ATTTTAGCTGGGGCATTACATGATAATGGTAGAGCTATTCTTGTAGGGCACAAAACATTTGGCAAAGGAAAGATTCAGGT ACCATTCCTTTTTTTTGTTATATGATCACACGGATGTTTTAAGTATTTAAATCTTGTTTTTAAACTGCATTTCTAAAAGG CAAATCATGAAACGAAGAGGTATTGTAATGTATATATGAGGTCGATAATGTACTCCAAGTCTACTGTAAGTGTGTTTTCC ATTTTAAAGGCATGTACCATGCATACTTTCACTACAGGGGAAAAAATTTAACACATTATACAAAATCAACAGTACTTAAT TGGAAGAGAGTCAAGAGACAATATAAAAGTTGAGGGGGAAACAGAGAATTTTTTCTCATCGGGGGTGATCGCCCATTTGT AATGTATGTAGTTCCTTTCCCGTGCATATACATATATGATCTGAAATAATTCATAGATCCCGCTTGGATACGGACTTAAA AGCACTTATTGCAGGTTACCTACTAAAAAAAGCATGGGATAATCTCCAATAGGTGTTCTTAGTCTGCATCCAAACGGGTT CATAATCATAAACTACTATGGAGTTCTGTCTTCATAATGTTCTATTTTGATCTATGTTTTCCCATGAAAGTTAATTTCAA AGTAAACAAACTGTAAACTTTGAGTAATTCTTACAGAAGTTGTTTATAAGCACAACCAATCAAAACTCTCGATAATATCA AAACAACTTGAACAAAAAAAATTCTGTCCTTTTTATCTGTATTATTTTGATATATCTTGAGTTTTTTATTGGTAGTCCCT ATATGCACTGTACTCATGCAAGAATTACTCAAATTTAGTCCCAAGGCTTGTTCCTATTTTTGATATCTTGGTTGATTGCA GAGTGTGACTCAGCTTCATGATGGGTCAGCCCTGTTTGTTACAGTAGCAAAATATCTCTCACCAGCCAAACATGACATAG ATAAGGTTGGGATAACCCCAGACGTGCAGTGCACCACAGAGATGCTGAATTCACCCAAAGATAAGGAGCTTTCAACCAAA GATCAAAGGAGCTCGGTCTCGTCTTTAGAAGCAGATTCATGCATCATGGTAGCTGAACACGAGTTGGATATGAAGGATTC CAAGGGAAGTGCTTCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0147300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCCTACACAAAAGTCAGTGGAATGGT TTCTACCCTTGGAGATCCGTTCACTCGAATTATCAGTCCAAAGGAATACCAAGGATTTAGAATTGGAAGTGATGGGAACT TACAAGGAGTAGGCCTCTTCATAAATGTTGAACCAAGAACGGGACATTTGGTTGTTTTGTCATGTATAGAAGGCAGTCCG GCTGCGCGTGCTGGTATACATCAAGGAGATGAATTGGTTGAGATAAATGGGGAGAGTGTTGATGGCATTGATAGTGAGGC TGCAGCACAGAGGCTTCGAGGGAATGCTGGAACAACAGTAACAGTAAAGGTCAAAAACTCAGGGAGAAGCTCTTACATCC GGGAGGTCAAACTTCCAAGGGAGTGTATCAAGCTCTCTCCAATATCCAGTGCCATCATCCCTCATAGATCCCCCGAAGGG CAGGCGATAAAAACTGGCTATGTGAAACTGTCAACCTTCTCTCAGACTGCTGCTGAAGACATGGAGAATGCTATTCAGGA CATGAAGAATCAAGGAGTACACTCATACATACTAGATCTACGGAACAATCCTGGTGGTTTGGTAAAAGCTGGTCTTGATG TTGCCCAGATGTGGTTAGATGGAGATGAAACTCTAGTGAATACAATCGATAGAAGCGGGGATGTTTTACCAATTAACATG GTCAATGGACATGCTATAACACATGATCCACTTGTGGTGATAGTCAATGAGGGAAGTGCAAGTGCCAGCGAGATTTTAGC TGGGGCATTACATGATAATGGTAGAGCTATTCTTGTAGGGCACAAAACATTTGGCAAAGGAAAGATTCAGAGTGTGACTC AGCTTCATGATGGGTCAGCCCTGTTTGTTACAGTAGCAAAATATCTCTCACCAGCCAAACATGACATAGATAAGGTTGGG ATAACCCCAGACGTGCAGTGCACCACAGAGATGCTGAATTCACCCAAAGATAAGGAGCTTTCAACCAAAGATCAAAGGAG CTCGGTCTCGTCTTTAGAAGCAGATTCATGCATCATGGTAGCTGAACACGAGTTGGATATGAAGGATTCCAAGGGAAGTG CTTCTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0147300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLQQTMVEMFPLNSADAAYTKVSGMVSTLGDPFTRIISPKEYQGFRIGSDGNLQGVGLFINVEPRTGHLVVLSCIEGSP AARAGIHQGDELVEINGESVDGIDSEAAAQRLRGNAGTTVTVKVKNSGRSSYIREVKLPRECIKLSPISSAIIPHRSPEG QAIKTGYVKLSTFSQTAAEDMENAIQDMKNQGVHSYILDLRNNPGGLVKAGLDVAQMWLDGDETLVNTIDRSGDVLPINM VNGHAITHDPLVVIVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTQLHDGSALFVTVAKYLSPAKHDIDKVG ITPDVQCTTEMLNSPKDKELSTKDQRSSVSSLEADSCIMVAEHELDMKDSKGSAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32060
2 369 368 9.1E-206 –
PANTHER
PTHR32060:SF5
2 369 368 9.1E-206 –
Gene3D
G3DSA:3.30.750.44
3 303 301 2.3E-102 –
SUPERFAMILY
SSF52096
11 330 320 3.48E-60
IPR029045
TIGRFAM
TIGR00225
16 334 319 2.1E-91
IPR004447
SUPERFAMILY
SSF50156
26 151 126 1.2E-20
IPR036034
ProSiteProfiles
PS50106
50 127 78 11.541
IPR001478
Gene3D
G3DSA:2.30.42.10
55 145 91 2.3E-102
IPR036034
SMART
SM00228
55 128 74 8.0E-15
IPR001478
CDD
cd00988
56 141 86 7.37299E-22 –
Pfam
PF17820
72 125 54 1.5E-13
IPR041489
SMART
SM00245
131 328 198 5.0E-70
IPR005151
Gene3D
G3DSA:3.90.226.10
146 325 180 2.3E-102 –
CDD
cd07560
164 326 163 3.27597E-76
IPR004447
Pfam
PF03572
164 326 163 1.7E-49
IPR005151
MobiDBLite
mobidb-lite
332 352 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008236
Molecular function Serine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0147300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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