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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036034
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We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.600s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0607500.1
n.a. Phosphoglucan phosphatase LSF1; TAIR: AT3G01510.1 like SEX4 1; Swiss-Prot: sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic; TrEMBL-Plants: tr|K7MWV8|K7MWV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607500 LjG1.1_chr1 115219332 115227294 -
2 domain predictions
1 GO term
LotjaGi1g1v0771600.1
n.a. Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600 LjG1.1_chr1 134423275 134428629 +
3 domain predictions
1 GO term
LotjaGi1g1v0771600.2
n.a. Serine protease; TAIR: AT5G27660.2 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14; TrEMBL-Plants: tr|A2Q336|A2Q336_MEDTR Peptidase S1 and S6, chymotrypsin/Hap; Found in the gene: LotjaGi1g1v0771600 LjG1.1_chr1 134423275 134428629 +
3 domain predictions
1 GO term
LotjaGi2g1v0236200.1
n.a. Serine protease; TAIR: AT5G36950.1 DegP protease 10; Swiss-Prot: sp|Q9FIV6|DGP10_ARATH Protease Do-like 10, mitochondrial; TrEMBL-Plants: tr|I1KZS0|I1KZS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0236200 LjG1.1_chr2 69683282 69688655 +
3 domain predictions
1 GO term
LotjaGi2g1v0246100.1
n.a. Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 LjG1.1_chr2 71150421 71157784 -
3 domain predictions
1 GO term
LotjaGi2g1v0246100.2
n.a. Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 LjG1.1_chr2 71150764 71155263 -
3 domain predictions
1 GO term
LotjaGi2g1v0259100.1
n.a. Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100 LjG1.1_chr2 72661064 72665809 +
3 domain predictions
1 GO term
LotjaGi2g1v0259100.2
n.a. Serine protease; TAIR: AT5G39830.1 Trypsin family protein with PDZ domain-containing protein; Swiss-Prot: sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic; TrEMBL-Plants: tr|I3S3D5|I3S3D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259100 LjG1.1_chr2 72661424 72665629 +
3 domain predictions
1 GO term
LotjaGi2g1v0447900.1
n.a. Rubredoxin family protein; TAIR: AT5G17170.1 rubredoxin family protein; Swiss-Prot: sp|O26258|RUBR_METTH Probable rubredoxin; TrEMBL-Plants: tr|I3TAC3|I3TAC3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0447900 LjG1.1_chr2 94181642 94184643 +
3 domain predictions
1 GO term
LotjaGi3g1v0467200.1
n.a. Membrane-associated zinc metalloprotease family protein, expressed; TAIR: AT2G32480.1 chloroplastic membrane metallo proteases; Swiss-Prot: sp|O80885|ARASP_ARATH Membrane metalloprotease ARASP, chloroplastic; TrEMBL-Plants: tr|V7AFZ2|V7AFZ2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0467200 LjG1.1_chr3 88269232 88271719 -
3 domain predictions
1 GO term
LotjaGi4g1v0149600.1
n.a. Protease m50 membrane-bound transcription factor site 2 protease, putative; TAIR: AT4G20310.4 Peptidase M50 family protein; Swiss-Prot: sp|F4JUU5|S2P_ARATH Membrane-bound transcription factor site-2 protease homolog; TrEMBL-Plants: tr|A0A0B2Q9W2|A0A0B2Q9W2_GLYSO Membrane-bound transcription factor site-2 protease; Found in the gene: LotjaGi4g1v0149600 LjG1.1_chr4 24533305 24544556 -
2 domain predictions
1 GO term
LotjaGi4g1v0149600.2
n.a. Protease m50 membrane-bound transcription factor site 2 protease, putative; TAIR: AT4G20310.4 Peptidase M50 family protein; Swiss-Prot: sp|F4JUU5|S2P_ARATH Membrane-bound transcription factor site-2 protease homolog; TrEMBL-Plants: tr|A0A0B2Q9W2|A0A0B2Q9W2_GLYSO Membrane-bound transcription factor site-2 protease; Found in the gene: LotjaGi4g1v0149600 LjG1.1_chr4 24536057 24544528 -
2 domain predictions
1 GO term
LotjaGi4g1v0238700.1
n.a. protease-like protein; TAIR: AT5G40200.1 DegP protease 9; Swiss-Prot: sp|Q9FL12|DEGP9_ARATH Protease Do-like 9; TrEMBL-Plants: tr|I1MTJ7|I1MTJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238700 LjG1.1_chr4 55470852 55479016 +
3 domain predictions
1 GO term
LotjaGi4g1v0384000.1
n.a. Carboxyl-terminal-processing protease; TAIR: AT5G46390.2 Peptidase S41 family protein; Swiss-Prot: sp|F4KHG6|CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic; TrEMBL-Plants: tr|G7L820|G7L820_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi4g1v0384000 LjG1.1_chr4 76254068 76261338 -
3 domain predictions
1 GO term
LotjaGi4g1v0384000.2
n.a. Carboxyl-terminal-processing protease; TAIR: AT5G46390.2 Peptidase S41 family protein; Swiss-Prot: sp|F4KHG6|CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic; TrEMBL-Plants: tr|G7L820|G7L820_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi4g1v0384000 LjG1.1_chr4 76254068 76261338 -
3 domain predictions
1 GO term
LotjaGi4g1v0384000.3
n.a. Carboxyl-terminal-processing protease; TAIR: AT5G46390.2 Peptidase S41 family protein; Swiss-Prot: sp|F4KHG6|CTPA1_ARATH Carboxyl-terminal-processing peptidase 1, chloroplastic; TrEMBL-Plants: tr|G7L820|G7L820_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi4g1v0384000 LjG1.1_chr4 76254867 76261349 -
3 domain predictions
1 GO term
LotjaGi4g1v0386500.1
n.a. Tetratricopeptide repeat protein 1; TAIR: AT1G55480.1 protein containing PDZ domain, a K-box domain, and a TPR region; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|B7FKN6|B7FKN6_MEDTR Tyrosine phosphatase, putative; Found in the gene: LotjaGi4g1v0386500 LjG1.1_chr4 76463838 76476877 +
3 domain predictions
1 GO term
LotjaGi4g1v0386500.2
n.a. Tetratricopeptide repeat protein 1; TAIR: AT1G55480.1 protein containing PDZ domain, a K-box domain, and a TPR region; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|B7FKN6|B7FKN6_MEDTR Tyrosine phosphatase, putative; Found in the gene: LotjaGi4g1v0386500 LjG1.1_chr4 76463838 76487364 +
3 domain predictions
1 GO term
LotjaGi5g1v0147300.1
n.a. Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A0L9TVD7|A0A0L9TVD7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0147300 LjG1.1_chr5 37621848 37629129 -
3 domain predictions
1 GO term
LotjaGi5g1v0147300.2
n.a. Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A072VIA3|A0A072VIA3_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi5g1v0147300 LjG1.1_chr5 37623176 37627274 -
3 domain predictions
1 GO term
LotjaGi5g1v0147300.3
n.a. Carboxyl-terminal-processing protease; TAIR: AT3G57680.1 Peptidase S41 family protein; Swiss-Prot: sp|F4J3G5|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic; TrEMBL-Plants: tr|A0A072VIA3|A0A072VIA3_MEDTR Carboxy-terminal processing peptidase-like protein; Found in the gene: LotjaGi5g1v0147300 LjG1.1_chr5 37623176 37627961 -
3 domain predictions
1 GO term
LotjaGi5g1v0162100.1
n.a. Carboxyl-terminal-processing protease; TAIR: AT4G17740.1 Peptidase S41 family protein; Swiss-Prot: sp|O23614|CTPA2_ARATH Carboxyl-terminal-processing peptidase 2, chloroplastic; TrEMBL-Plants: tr|A0A151T111|A0A151T111_CAJCA Carboxyl-terminal-processing protease; Found in the gene: LotjaGi5g1v0162100 LjG1.1_chr5 41625317 41638144 -
3 domain predictions
1 GO term
LotjaGi5g1v0162100.2
n.a. Carboxyl-terminal-processing protease; TAIR: AT4G17740.1 Peptidase S41 family protein; Swiss-Prot: sp|O23614|CTPA2_ARATH Carboxyl-terminal-processing peptidase 2, chloroplastic; TrEMBL-Plants: tr|K7LKB3|K7LKB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0162100 LjG1.1_chr5 41633273 41634423 -
3 domain predictions
1 GO term
LotjaGi5g1v0262000.1
n.a. protease-like protein; TAIR: AT2G47940.1 DEGP protease 2; Swiss-Prot: sp|O82261|DEGP2_ARATH Protease Do-like 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TWQ0|A0A0L9TWQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0262000 LjG1.1_chr5 57075940 57085236 +
3 domain predictions
1 GO term
LotjaGi6g1v0060100.1
n.a. DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100 LjG1.1_chr6 10953369 10980005 +
3 domain predictions
1 GO term
LotjaGi6g1v0060100.2
n.a. DegP protease-like protein; TAIR: AT3G03380.1 DegP protease 7; Swiss-Prot: sp|Q8RY22|DEGP7_ARATH Protease Do-like 7; TrEMBL-Plants: tr|I1LME4|I1LME4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060100 LjG1.1_chr6 10953662 10974112 +
3 domain predictions
1 GO term
LotjaGi6g1v0203400.1
n.a. 26S proteasome non-ATPase regulatory subunit 9; TAIR: AT5G57950.1 26S proteasome regulatory subunit; Swiss-Prot: sp|O94393|PSMD9_SCHPO Probable 26S proteasome regulatory subunit p27; TrEMBL-Plants: tr|I3SW57|I3SW57_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0203400 LjG1.1_chr6 50084205 50088915 +
3 domain predictions
1 GO term