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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0164100 |
| Transcript ID | LotjaGi5g1v0164100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0164100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42020342..42022488) extracted from Lotus japonicus Gifu genome v1.2.
ACACCGGTCACCGGAGAATAAAAAGTGAGAGCGGCGGCGATTCAAACTTTTCCGGCCATGGAAGCGGCGGTGGCAGCCGT AGAAAACATACTCCGTTACAGTTTCAAGAACAAGAAGCTTCTAGAAGAAGCCCTCACCCACCCCTCCTTCGCCGGCGCCA CCTCCTACGAGCGCCTCGAGTTCATCGGCGACCCCATTCTCGGCCTCGCCATCAGCAACTACCTCTATCTCGCAAACCCT TCCCTCAACCCCGGCCAGCTCTCTCTCCTCCGCGCTGCCAATGTCAGCACCGAGAAGCTCGCCCGCGTCGCCATCCGCAG CGGAATTTACCGCCATGTCCGCCATAACAGCGTTCCCCTTGTCAATAAGGTTCGGGAGTTCGTTGTTGCTATTGCTGATG AGGACCGCACTGTTTGTTACGGTGGAATCGTGAAGGCTCCCAAGGTTCTCGCTGACATTGTTGAGTCTGTGGCTGCTGCT GTTTACGTTGATCTTGGTTTTGATCTCCAGAATTTATGGGTGGTGCGTTTTCGACTTTCTCTAAGCAATCTCTGTCGTTA ATTCATCATGATAGTTATTGCATTTTCATTGATCGTTAGATTTTCAGATTCAAATGTTTGAAATTTCCATCTGGGGTGTT GTGTTATCAAACTTATCATATATGCCCTCAGGTCACTATTATAAGCAAAAGTTAGCTAGGGAATTACGAGGCTCGCGTGC TATTATGATTAGTGTTCAGTGAAATCACAGGATTCCTAGCATGATTGGTTTGATGATTTGCATATAATCCAAGACCCAAG GCTTATAGCTTCTAATCAGAAGTGATTTATTCTATAGAATTTCACTGCAGGACCAAAAATGGTAGAAAATGGTAGAGGTT TTCCTACGTGTATCCGAACATGTTAAGTGCATATTTGAAAAATGGAAGTAGAATCGCATATCATTATAATTGCTTGAGAA ATAAGCTTTATTGTCTGCGGTGTTTGCGTGCATGTTTTAAAAGTGAATTTACTTTTATACCAATTGTTACGCAAACACAC CTGAAATTGTTTAGTGCATGTTTGGAAATTATTTACAATTTACGATAAAGCTAAAGCCAATTATGGAGATAAGCTTCTGT GAGTAGCTTCTTAGTGTGAGGAAATTGATTGAGGAAAGAGAAACGGATCGGACCATGCTATTAGTTGTTATCATCCAAAA TCTTTGTGATTTGGTGCTGTGTCCTTAAGGCTGAGGAAAATTGATTGTGAATTGTGATTGTTCTTTGCAGATAATTAGAG GTCTTTTGGAGCCGATAGTGACATTGGATGATCTGGAACATAACCCTCAACCGGTGACAATGCTCTTTGAGATCTGCCAG AAGAATGGGAAGCAGGTTGACATCAAATACAGGAGGGACAGTGACAAAAGCATTGCCGGTGTCTTTGTTGATGGGCAAAT TGTTGCCTCTGCTTCCTCTGATCAGAAGGACATTGCAAAGCTTGATGCTGTCAAGGTTGCCTTGCATAAACTAGCACATT TAGTGCCTTCCAGTACAATGACATAAAAAAAGGTCCAAACCAGTATACAGGTAACCACTGTGACCCTACTGACCACTATC GTTTGCAATGACATATGAAAGAATAACACTCATTTAGAGTCCTGATTTCTTTGTATAAAATGCATCTTCTTGTCTTCTGA TTCCCTCTAGTAGCCCAAGTATGAAAGTACTATGGTGTGGATGAAACAAAAATGATGATGATGAGGTAAGTCCTTTTGAT TCGTGGCTCTGCACCCTTTTTCTTTACTATGGACGGGTGGACAACACAAATATCTGCTTGCAGCTCCTTTGGAACATGGT GGCTGCTTAATTAAATTAAGATATGGAAGAGCTTGGGCCTTTGAAGTTGAGGATTTGTGATCGGCTCCATCTTTAGAGAA TTAGCTTCTGGCCCTACAAGGACTGCATGACAGCAAAGTATCTCTAAAAGTCTAGCTACTAGTATCTGTTATGCAGTAGC AATTTTTCCTTTGTTGTTAGCCTTGGGTGGCCCTCTTTTGTTTGTTTAGATGATAGTCTTGTTGATCTGCTTTGATGCAG TAGCTTTCTTTGTTTCTTTTTTCTTTTTTCTCTCTTCTTGTACCATGGGTTGGAGTACCCCTTGTAC
CDS sequence (LotjaGi5g1v0164100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCGGCGGTGGCAGCCGTAGAAAACATACTCCGTTACAGTTTCAAGAACAAGAAGCTTCTAGAAGAAGCCCTCAC CCACCCCTCCTTCGCCGGCGCCACCTCCTACGAGCGCCTCGAGTTCATCGGCGACCCCATTCTCGGCCTCGCCATCAGCA ACTACCTCTATCTCGCAAACCCTTCCCTCAACCCCGGCCAGCTCTCTCTCCTCCGCGCTGCCAATGTCAGCACCGAGAAG CTCGCCCGCGTCGCCATCCGCAGCGGAATTTACCGCCATGTCCGCCATAACAGCGTTCCCCTTGTCAATAAGGTTCGGGA GTTCGTTGTTGCTATTGCTGATGAGGACCGCACTGTTTGTTACGGTGGAATCGTGAAGGCTCCCAAGGTTCTCGCTGACA TTGTTGAGTCTGTGGCTGCTGCTGTTTACGTTGATCTTGGTTTTGATCTCCAGAATTTATGGGTGATAATTAGAGGTCTT TTGGAGCCGATAGTGACATTGGATGATCTGGAACATAACCCTCAACCGGTGACAATGCTCTTTGAGATCTGCCAGAAGAA TGGGAAGCAGGTTGACATCAAATACAGGAGGGACAGTGACAAAAGCATTGCCGGTGTCTTTGTTGATGGGCAAATTGTTG CCTCTGCTTCCTCTGATCAGAAGGACATTGCAAAGCTTGATGCTGTCAAGGTTGCCTTGCATAAACTAGCACATTTAGTG CCTTCCAGTACAATGACATAA
Protein sequence (LotjaGi5g1v0164100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAVAAVENILRYSFKNKKLLEEALTHPSFAGATSYERLEFIGDPILGLAISNYLYLANPSLNPGQLSLLRAANVSTEK LARVAIRSGIYRHVRHNSVPLVNKVREFVVAIADEDRTVCYGGIVKAPKVLADIVESVAAAVYVDLGFDLQNLWVIIRGL LEPIVTLDDLEHNPQPVTMLFEICQKNGKQVDIKYRRDSDKSIAGVFVDGQIVASASSDQKDIAKLDAVKVALHKLAHLV PSSTMT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 175 | 175 | 8.2E-50 | ||
| PANTHER | 2 | 243 | 242 | 2.9E-98 | – | |
| PANTHER | 2 | 243 | 242 | 2.9E-98 | – | |
| SUPERFAMILY | 3 | 166 | 164 | 9.94E-39 | ||
| ProSiteProfiles | 5 | 147 | 143 | 33.395 | ||
| SMART | 20 | 170 | 151 | 2.6E-30 | ||
| CDD | 20 | 170 | 151 | 2.34224E-38 | ||
| Pfam | 38 | 147 | 110 | 3.3E-20 | ||
| SUPERFAMILY | 129 | 236 | 108 | 7.61E-9 | – | |
| ProSiteProfiles | 175 | 238 | 64 | 8.761 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi5g1v0164100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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