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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0174600 |
| Transcript ID | LotjaGi5g1v0174600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Single-stranded DNA-binding protein; TAIR: AT4G20010.2 plastid transcriptionally active 9; Swiss-Prot: sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic; TrEMBL-Plants: tr|A0A0R0KWQ4|A0A0R0KWQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0174600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44574700..44577442) extracted from Lotus japonicus Gifu genome v1.2.
CTTGACCAAAAAGAGAAACAAAAAGAAACTCAAAAACCCTCTTATCACCAACACAGTGAAACCCAAAGCCAGAGCAAGAG GAAGCAGAACTCAGAGGTAATGCAAATGGCGATAGAACAAGCACTATCATCATCAACAACAACCACCTTCAGAAACCTTC TAACCTTCCCCAAAACCCCAATTTCAAAACCCAAATTCCAGTTCCCATGTTCTCCATCACACTCCAATTTGAAGTTGAAG TTGAAGTTCAAATGCTCCTCCATGTCCACCAATGCATCCTACCCTAAACCCTCGGAAATCCCGTGGCAGAAGGAGCTCTG CAACTCCGTCAGCCTCATCGGCACCGTCGGCGCCCCCGTCGAAATCAAGCACTTCCCCTCCGGCAAGGTCGCTTCCTGGA CCCACCTCGCCGTCAAGAAAAACGCCACCCAGACTTCGTGGGTTAATCTCACGTTCTGGGATGAACTTGCTCATGTTGCT TTTCAGCATGTCCAGAAAGGTCACCAGATTCATGTCTCTGGTCGCCTCGTCGCTGACACCGTCGAAACCGATGAAGGGAA ACAGCAAACCTACTATAAGGTTTCTTTTGTTCTGATTCTGATGCTGAGAGTTCATGTTTATACAAATCGATGTGGATGAA ATTTTATTTGAACAAAAATTTGTGTTTATTCATGATTTGATTTTGCTAATTTTGTTGCTATTCTTGAAGTGTATCACTCA CTGTGTTGTGGATATTGTTCAGGTGGTTGCTCAGGAGCTGAATTTCATTGATAGGAGCTTCTCACAAGTGAATTCTCAGG ATCAGGACTCTGATTTCATGATGTCTGGCAATGGCAAGTCATATATGTTCAGTGTAATGTGTGTTAAGTTCTGATGGATT TTGCTTTTTACTGTATATTTTGGCATTGTTCTTTCAGGTAGAAAAGCGGGGTATGCTGCAAATAGTACTGGGTCTGTGAT GGAATTGTGGCAAGCTTTCTTTGCTAACCCAGGGGAGTGGTGGGACAATAGAAACAAAAAGGTAAAATTGTTTGATTAGT CTTGTAAATTAAGAAAAGTTGGGTATGTAGATATAATGTAGTGCTGTCTTTCTTTGTGGCCTTAAGTTTTCAAGTTTCAA GTATTGTGTTGAGTCTATTGGTTATTGCTAGCTTGTGATTGTATTTGGAGTTAATTCTCTCCAAAACCTGTCTTTGAACT TGCCCTTTAATGATTTCCCTCATTTCATTTTTTGATGCACAAAATTAAGAGGGTAGGTTGCCCCGTTACAAGGTTAGGAC ATGTCATAGGCCAAGGCTTATAGTGACACTTCTAAATAAGTTATCAGTAAAGGATCCCTTTCAGGAATTGAACCCCGAGA CTCTTGTTCTGTTCTATCCCCTACTGGTTCAGTTAACTCACATTGTCATCCCGTTTTACATTAGTGAGAAAACCCTTCCA TCCAAAAGATAAAGATAAACCTTACCTGACTATTACATTAGTGAGAAAACCCTTCCATCCAAAAGATAAAAATAAACCTT ACCTGACTATTGTTATACGTATTTGGTGTCGGCATGGCTATGAGACACCGTAACTGTACCCTTGGTATCGTTGCCTTTGA GCATTAGGTGTCTGCTCCTGCATCAAAGCACATATTACCAGCGAACGAACAATCTCAGGATTTTGCAGCTTGCATTATAT TCAATCAACTATTTATATGGAACTGGATCAATATTTAGGTGACAATTCAATTATTTGAATAAAAAGTTATGATGATTATT TCATGTTTGTTGAATATTATTGTTAGGTTGTGTTTCTCTGCTTAGATTAACACAGAGAACTGTATGTATTGTTTAATAGC CCTGTCTAATTTGTTTCCAAGCTCTATCCTCCACTCTTTTTTGCGAAGTCCTTATGAATTTCTCTGGCCTTATACATATA TATTTGGAAACTTTGCAGAGGAACCCGAAAGCGCCTGATTTTAAGCACAAAGATACTGGAGAAGCTCTGTGGATCGAAGG TAGATCCACTCCATCATGGGTCAATTCCCAACTGGAGATAATGGACTCAAGGATGGGGTCGTTTACAGGTCAAAGGATGC CTGTAGATATGGTGACAACAGATGAAATCTTCTCTCGCTAAAAGCTTAACTATGTTTGGATATTTGTTGACACCGGTGCA AACGGACGCTAACACTCACTTGAGATAAAAAAGTGTACGGAACTCTTCTGGATTGGGATGAAAGTCGGCTCGCGTTACAT TCAAATGGTATCCAAACACTTATTTCTTAATCTTATCCAATGTAATATTTTGTTTCAACTTTGTACAGTTTGTATTTGGC CAGTAAATTTTAGCTCTGTTGACACATGGAGAGGCTTTGTAGTCAGTGGCAGTATGTTATCTGGGTTGACCCTAAGAGCC TGCTTTATTTAATGAGCTTTATTCACATTGCTTGGAACTGGATTTTGGCTTTAGCTTATCTGGATAATTAATTTTTTTAA TGTGGAAATGTATTAACAATGATACAGTGAAAGCCAGAAATAGCTGAGAGCATGATACTATTCCCCCCTCATAATATTTA ATACAAAATTCTTTATGGAGTAAATTTTAGCACACAGTGCAGGTGGAGAAATCAATGATGTTTGTGTTTTTCGGGTCAAG ATACCAATAATATCAGCAGGGTGCCAAATTGCTTTAGGCCCAAATTGTACCAAAGCCTTCTATGATTGTTATTCCTTCTC TGTTACCCATGTTCTCTCTTTCT
CDS sequence (LotjaGi5g1v0174600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATGGCGATAGAACAAGCACTATCATCATCAACAACAACCACCTTCAGAAACCTTCTAACCTTCCCCAAAACCCC AATTTCAAAACCCAAATTCCAGTTCCCATGTTCTCCATCACACTCCAATTTGAAGTTGAAGTTGAAGTTCAAATGCTCCT CCATGTCCACCAATGCATCCTACCCTAAACCCTCGGAAATCCCGTGGCAGAAGGAGCTCTGCAACTCCGTCAGCCTCATC GGCACCGTCGGCGCCCCCGTCGAAATCAAGCACTTCCCCTCCGGCAAGGTCGCTTCCTGGACCCACCTCGCCGTCAAGAA AAACGCCACCCAGACTTCGTGGGTTAATCTCACGTTCTGGGATGAACTTGCTCATGTTGCTTTTCAGCATGTCCAGAAAG GTCACCAGATTCATGTCTCTGGTCGCCTCGTCGCTGACACCGTCGAAACCGATGAAGGGAAACAGCAAACCTACTATAAG GTGGTTGCTCAGGAGCTGAATTTCATTGATAGGAGCTTCTCACAAGTGAATTCTCAGGATCAGGACTCTGATTTCATGAT GTCTGGCAATGGCAAGTCATATATGTTCAGTGTAATGTGTGTTAAGTTCTGA
Protein sequence (LotjaGi5g1v0174600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQMAIEQALSSSTTTTFRNLLTFPKTPISKPKFQFPCSPSHSNLKLKLKFKCSSMSTNASYPKPSEIPWQKELCNSVSLI GTVGAPVEIKHFPSGKVASWTHLAVKKNATQTSWVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYK VVAQELNFIDRSFSQVNSQDQDSDFMMSGNGKSYMFSVMCVKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 183 | 141 | 3.1E-74 | – | |
| PANTHER | 43 | 183 | 141 | 3.1E-74 | ||
| Gene3D | 72 | 186 | 115 | 1.4E-20 | – | |
| ProSiteProfiles | 73 | 170 | 98 | 21.135 | ||
| TIGRFAM | 74 | 184 | 111 | 1.1E-16 | ||
| Pfam | 75 | 168 | 94 | 2.8E-16 | ||
| SUPERFAMILY | 75 | 182 | 108 | 3.29E-22 | ||
| CDD | 77 | 169 | 93 | 3.05109E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi5g1v0174600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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