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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0187600 |
| Transcript ID | LotjaGi5g1v0187600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein; TAIR: AT4G28600.1 no pollen germination related 2; Swiss-Prot: sp|Q66GN3|NPGR2_ARATH Protein NPGR2; TrEMBL-Plants: tr|K7LK68|K7LK68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0187600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47561591..47566240) extracted from Lotus japonicus Gifu genome v1.2.
AACTTGTGAAATTTACCAAAACAGACAAAAGGTTGTGGAAAAGCATCATCCAACTTTGGATTCTTGCTTAGCAAGAGATA ATCATTCATTGGGGTAACTTTCTTTGTGGAAGAAAATCAGTAGCACTTGCACATTCATTTTCTTTATTCTTGTGGGCTCT GCCAATAATACCTTCTCTTCTTTTTTTCAAGTTGTCCCTACAGTTAGCACAGTTATGAGACTAATCTTCTTCTGAAGGTT TAGAGATTATATTGAATGGGTAAGTCTTTCAATAAATTTTACTTCAGATGTATCGTCCAATGATCAAACTCAGCCTAAAT ACTTAAAGAGTTCAGCTATCTACCAACAGTTGGCCAGCAACCGCAACTGGTGTTGTAGAACTTGTGGGCTCTGCCTATAA TACCTTTTTGTTCCATTGAAAAGCTACCTTTATTTTTATCCCCCATTTTTCTACCCTCTGCTATCATTTGTTCTCCTCTG TCTTATACTATAAGGGGCTTCCTTACATTCAACTCTAGGTTAGCAAATTATCCTCTTTTCCTTTTACAGCACTCCCCAGT CCATTGCATTCAGTTTATATATAGGTACAGTTTGGCTGCTTCTCATTTTTGTTTTTTGTTTGTTTCAGAAATAACTATTT TGCTCCTTGGTTTTGTTGATCATCAATTTGGTTAACTTGAAGTGCTTCTTCTTATGTTGATGATGTTTCAGGAAAGTTTC AACTGGGATGTTCCAGCATGAGAGCTAAGAGTTTGATAAGGAAGAGGAAGTATAGCATTAGAGGGAAATTGAGGAATATG ATCAAGTGCATAGGTTTCAAGGAGCTGTTAAGTGTGGATAAAATGAGTACTCATTCATCAGAGTCTCTGGCAACCAGAGA CTATTCAGCGAGTGGTGGTTTTTCATCTCGTCCCGGTGAAAACGATACAAAGGTGGATAATAGCAACATTGAGGAAGCAG AGTCTTCTCTTCGTGAAAGTGGTTATTTGAACTATGAGGTCAGATAAAAAAGTGACTTCTATCTCCTTTCATACCTTTTT CAAGGCTTTTTATGCTTCCATCTTAATCTGTAATATGATAGTGATATTTTTCTAGTATGAAAATAGGTTCTTATCCCAAT ATTTAATTTTATTGATACTTCAGAAACTTATTCATTATAAGATGAAGCTCAAGAATTTGGATTTTGGATCCTCCTGCCAT GCCAATTTGGATCCTATGTAGTAGAGATTTCCTCCTGCACAATTATATGCCCTTCATTTCAATAGTTAGGATTAATCTAA ATAAAAATAACATATTAAATTAAAAATTATATGATAATTTATTGGCTGCAGAGGCCCGCAGAGAATGTGAATCCCTTTTG TGCAGCCTATGCAGTAGCAAAATTAACAAGTGTTTGAAACTTTTGACCAATTTAATGTTTTTTATTAATCAATCTGGACC ATTTAATATAAAAATCATCGGCCAAAGAATTTGCCAGCAGAGAGATGTGGAGAATATGATTGTAGAGGATCTATGTTGTG AAGCTTATTATGACATTTTCAACACAGGAAGCTAGAGCCTTGTTGGGAAGACTTGAGTACCAGAGAGGTAATATTGAAGC TGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCCTTCCCAAGATTAAATTTTCTATATCTAGAAGATTGGAAC CCAATAGACGCAATTCACAAAGTGATGCAGTGCCTCCTATGTCAATACATGCTGTTAGTTTACTCCTTGAAGCTATTTTT CTCAAAGCTAAATCACTGCAGACTCTAGGAAGGTTTCAAGGTGCTTGATTCTTTTATCTTGTTCTTAATTCTTATTTAAC CAAATTCATCATTTATCTTGCACTCTATCTTCAAATTCAAAGGCTGTTGTTTCTGTGGAGATCCTTAAATCTTTTATCAC TTAATTAATTTGCAGTGTATGGTTTTGTTTGTGACTGTAACTTAATAATTTGCAGATGCTGCCCAATCTTGCAGAACAAT TTTAGACACTGTTGAATCAGCATTACCAGAAGGGTGGCCTGAAAACTTTGTTTCAGACTGCAAATTACATGAGACCCTAA CAAATGCTGTAGAACTGCTTCCTGAGTTGTGGAATCTTGCTGGTTCTCCTCAAGATGTTATTTCCTCGTTCCGGCGAGCC TTGCTTTATCGTTGGAATCTCCATGCAGAAGCCGTTGCGAGAATTCAGAAGGAATTTGCTTTGTTTCTTTTGTATAGTGG TTGTGAAGCAAGTCCTCCTTCTCTCCGCTCGCAGCTGGATGGTTCCTTTGTGCCGATAAACAACTTGGAGGAGGCTGTTC TTCTGCTTCTGATTCTCCTGAGAAAATCAGTTCTTGGAAGCATTTTATGGGACCCTTCAATAATTGACCACCTTTCTTTT GCTCTGAGTGTTTGTGGGGAACTTAAGACTCTGGCTCAACAGGTTGAGGAGTTTCTTCCAGAAACCATGGAGGGAAAAGA AAGATATTACACACTAGCTCTATGTTACTGTGGGGAAGGTGAGAGTATGATTGCTTTGGATCTTTTGAGAAACTCTTTGA GTAATAGAGAGAATTTGGACTGCATACAGGAATTACTTCTAGCTTCGAAAATTTGTGCAGACAACAACGTTTGTGTTGCA GATGGAATCAAATATTCTAGCAAAGCCATTTCTCAGATGAATGGAAAATGCATCCAAATGGTAGCTATTGCAAATTGCTT ACTAGGTGTGCTACTGTCAGCAAAATCCAGGTCAGTTTCCTCCGAATTTGAGAAGGCTTCGATGCAGTCTGAAGCACTCA GTGCTCTAGAATCTGCTGAGAGAATGATGAGGGAGAATGATCCATTCATTGTCCATCATCTTTGTGTAGAATATGCCGAG CAGAGGAAATTGGAGTTGGCTTTTTATCATGCAAAGAAACTGATTAAGCTGGAGGGTGGGTCTAGTATTATTGGATATTT ACTACTAGCGCGGATTTTATCAGCTCAGAAAAAGTTTTTAGATGCTGAGATTGTCGTTGATGCTGCTCTAGATCAAAGTG GAAGATGGGATCAAGGTGAATTGTTGAGAACTAAAGCTAAACTACGGATTGCGCAAGGAAAATTAAAGAATGCGGTGGAG ACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAAAATAAATGTTTAGGTACTGCAAATAAGGTTGTCAAGGTATGATG AATTGATAAAGTGTGGAAATATCACTTTGACTCTTCAATAACTCAAATTATCAAACAGAAAAGAAGCTGAGAAGCTTCCC TGTTATACAGAATAAACATTAATTTCTGATTTCTATTTTATACAGCGTAAAGGAAACCGTGACAGAAGACTAGAAATGGA AATATGGCATGACTTAGCCAATTTATACTCAAAGTTATCTCAGTGGCATGATGCTGAAGTTTGTCTTGCAAAATCTGAAG CTATTAATCCCTATTCTGCTTCTAGATGGCACTCCACAGGTATATTGCATATCTTCTTCTGATTAACTACTAAGTGTTCC AAAGAATGTATCTTACAGAATCTCCATTACTTTTGAGAAAGAATATAATTGGCCACAAAGGAAATGCAGTCTTAATTTTT GTGGAAACTTAACAAGTTCTACATTCTTCATTTAGCAAAGTTTACAAGATTTCTGTTTTGCAGGTTTACTTTTTGATGCT AGAGGTCTTCATCAAGAGGCTCTGAGATCATTCAGAAAAGCATTAGATATTGAGCCTAACCATGTGCCAAGTTTGGTATC CACAGCCTGTGCTCTTAGACATTTTGGTGGCCAATCATCTTCAATTGTTAGAAGCCTTCTCAATGATGCACTAAGGCTTG ACAGAACAAACCAATCTGCATGGTACAATCTTGGACTGCTCTATAAAGCTGATTTAGGGGCATCAGCACTGGAAGCTGTT GAATGCTTTGAGGCAGCGGTACTTCTTGAAGAATCTTCACCCATTGAACCATTTAGATAAACTAAATTTTTTTGACATAT ATTATAGCAAGTTATATGTATGCTGATGACTCTTATGAATGAAATAGTCCGATAGGAAAAGAAGAAAGATCACTAGGAAA GTTTGTATCAATTTTTACAAGTCATCATTCATATATATCGTTTATGTTGGCGGAAATATGAATGTTTGGTAATTAGGGTT CTAAGGTGATTGTGATTTATGTGTACATTTCCTCTCTGTCAGTTTACTTAGGAATTAGGAAATATATTATTGAGTTGTTT ACAGAAAAATATACCCAGTAGTTAAAGCCTAAAGTTGGTCGTCAAAAATGCAATGAGGAATTTAAGTATTCAACTTCTAG TACTTAGCTTAGAGATATCGATTTCATGTGTGGTTAATCTGTAGTTTATTTGCCAGGTAACGCTTGGAACAACCATTGAA GATAAAAATGAACTGAAGTATGATTCTCACTGCAATCCCCTCTAGTTGGTGACAAATATATCGTCATTTAAAAAAGCAAA TAGCAATGTGTCTTGGCTAAGGAACTAAGATTGTTGTTATATTCTCCAATGAGTAGGTGTTTTACCCTTCTATTGTTAAT GGAGAACTCCCATAATGTGAAACCAAGAACGAGCTCTAAAATGAAAGAATAAATAATAATTGAGGTTCTATAGAATCAAC GTTTGAAAAC
CDS sequence (LotjaGi5g1v0187600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCTAAGAGTTTGATAAGGAAGAGGAAGTATAGCATTAGAGGGAAATTGAGGAATATGATCAAGTGCATAGGTTT CAAGGAGCTGTTAAGTGTGGATAAAATGAGTACTCATTCATCAGAGTCTCTGGCAACCAGAGACTATTCAGCGAGTGGTG GTTTTTCATCTCGTCCCGGTGAAAACGATACAAAGGTGGATAATAGCAACATTGAGGAAGCAGAGTCTTCTCTTCGTGAA AGTGGTTATTTGAACTATGAGGAAGCTAGAGCCTTGTTGGGAAGACTTGAGTACCAGAGAGGTAATATTGAAGCTGCACT TCATGTATTTGAAGGAATAGATATTGCTGCTGTCCTTCCCAAGATTAAATTTTCTATATCTAGAAGATTGGAACCCAATA GACGCAATTCACAAAGTGATGCAGTGCCTCCTATGTCAATACATGCTGTTAGTTTACTCCTTGAAGCTATTTTTCTCAAA GCTAAATCACTGCAGACTCTAGGAAGGTTTCAAGATGCTGCCCAATCTTGCAGAACAATTTTAGACACTGTTGAATCAGC ATTACCAGAAGGGTGGCCTGAAAACTTTGTTTCAGACTGCAAATTACATGAGACCCTAACAAATGCTGTAGAACTGCTTC CTGAGTTGTGGAATCTTGCTGGTTCTCCTCAAGATGTTATTTCCTCGTTCCGGCGAGCCTTGCTTTATCGTTGGAATCTC CATGCAGAAGCCGTTGCGAGAATTCAGAAGGAATTTGCTTTGTTTCTTTTGTATAGTGGTTGTGAAGCAAGTCCTCCTTC TCTCCGCTCGCAGCTGGATGGTTCCTTTGTGCCGATAAACAACTTGGAGGAGGCTGTTCTTCTGCTTCTGATTCTCCTGA GAAAATCAGTTCTTGGAAGCATTTTATGGGACCCTTCAATAATTGACCACCTTTCTTTTGCTCTGAGTGTTTGTGGGGAA CTTAAGACTCTGGCTCAACAGGTTGAGGAGTTTCTTCCAGAAACCATGGAGGGAAAAGAAAGATATTACACACTAGCTCT ATGTTACTGTGGGGAAGGTGAGAGTATGATTGCTTTGGATCTTTTGAGAAACTCTTTGAGTAATAGAGAGAATTTGGACT GCATACAGGAATTACTTCTAGCTTCGAAAATTTGTGCAGACAACAACGTTTGTGTTGCAGATGGAATCAAATATTCTAGC AAAGCCATTTCTCAGATGAATGGAAAATGCATCCAAATGGTAGCTATTGCAAATTGCTTACTAGGTGTGCTACTGTCAGC AAAATCCAGGTCAGTTTCCTCCGAATTTGAGAAGGCTTCGATGCAGTCTGAAGCACTCAGTGCTCTAGAATCTGCTGAGA GAATGATGAGGGAGAATGATCCATTCATTGTCCATCATCTTTGTGTAGAATATGCCGAGCAGAGGAAATTGGAGTTGGCT TTTTATCATGCAAAGAAACTGATTAAGCTGGAGGGTGGGTCTAGTATTATTGGATATTTACTACTAGCGCGGATTTTATC AGCTCAGAAAAAGTTTTTAGATGCTGAGATTGTCGTTGATGCTGCTCTAGATCAAAGTGGAAGATGGGATCAAGGTGAAT TGTTGAGAACTAAAGCTAAACTACGGATTGCGCAAGGAAAATTAAAGAATGCGGTGGAGACATATACTTTTCTTCTTGCT GTTCTTCAAGTCCAAAATAAATGTTTAGGTACTGCAAATAAGGTTGTCAAGCGTAAAGGAAACCGTGACAGAAGACTAGA AATGGAAATATGGCATGACTTAGCCAATTTATACTCAAAGTTATCTCAGTGGCATGATGCTGAAGTTTGTCTTGCAAAAT CTGAAGCTATTAATCCCTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTTTGATGCTAGAGGTCTTCATCAAGAG GCTCTGAGATCATTCAGAAAAGCATTAGATATTGAGCCTAACCATGTGCCAAGTTTGGTATCCACAGCCTGTGCTCTTAG ACATTTTGGTGGCCAATCATCTTCAATTGTTAGAAGCCTTCTCAATGATGCACTAAGGCTTGACAGAACAAACCAATCTG CATGGTACAATCTTGGACTGCTCTATAAAGCTGATTTAGGGGCATCAGCACTGGAAGCTGTTGAATGCTTTGAGGCAGCG GTACTTCTTGAAGAATCTTCACCCATTGAACCATTTAGATAA
Protein sequence (LotjaGi5g1v0187600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAKSLIRKRKYSIRGKLRNMIKCIGFKELLSVDKMSTHSSESLATRDYSASGGFSSRPGENDTKVDNSNIEEAESSLRE SGYLNYEEARALLGRLEYQRGNIEAALHVFEGIDIAAVLPKIKFSISRRLEPNRRNSQSDAVPPMSIHAVSLLLEAIFLK AKSLQTLGRFQDAAQSCRTILDTVESALPEGWPENFVSDCKLHETLTNAVELLPELWNLAGSPQDVISSFRRALLYRWNL HAEAVARIQKEFALFLLYSGCEASPPSLRSQLDGSFVPINNLEEAVLLLLILLRKSVLGSILWDPSIIDHLSFALSVCGE LKTLAQQVEEFLPETMEGKERYYTLALCYCGEGESMIALDLLRNSLSNRENLDCIQELLLASKICADNNVCVADGIKYSS KAISQMNGKCIQMVAIANCLLGVLLSAKSRSVSSEFEKASMQSEALSALESAERMMRENDPFIVHHLCVEYAEQRKLELA FYHAKKLIKLEGGSSIIGYLLLARILSAQKKFLDAEIVVDAALDQSGRWDQGELLRTKAKLRIAQGKLKNAVETYTFLLA VLQVQNKCLGTANKVVKRKGNRDRRLEMEIWHDLANLYSKLSQWHDAEVCLAKSEAINPYSASRWHSTGLLFDARGLHQE ALRSFRKALDIEPNHVPSLVSTACALRHFGGQSSSIVRSLLNDALRLDRTNQSAWYNLGLLYKADLGASALEAVECFEAA VLLEESSPIEPFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 409 | 409 | - | – | |
| PANTHER | 10 | 733 | 724 | 0.0 | ||
| PANTHER | 10 | 733 | 724 | 0.0 | – | |
| MobiDBLite | 42 | 68 | 27 | - | – | |
| MobiDBLite | 42 | 64 | 23 | - | – | |
| SMART | 154 | 187 | 34 | 92.0 | ||
| SMART | 339 | 372 | 34 | 360.0 | ||
| Phobius | 410 | 427 | 18 | - | – | |
| Phobius | 428 | 733 | 306 | - | – | |
| SUPERFAMILY | 442 | 559 | 118 | 2.51E-7 | ||
| SMART | 496 | 529 | 34 | 170.0 | ||
| SUPERFAMILY | 533 | 703 | 171 | 3.2E-17 | ||
| Gene3D | 571 | 729 | 159 | 1.3E-17 | ||
| SMART | 588 | 621 | 34 | 1.7 | ||
| ProSiteProfiles | 588 | 621 | 34 | 7.08 | ||
| ProSiteProfiles | 588 | 727 | 140 | 18.49 | ||
| SMART | 622 | 655 | 34 | 0.014 | ||
| ProSiteProfiles | 622 | 655 | 34 | 11.417 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0187600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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