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LotjaGi5g1v0190900.2

Overview

Field Value
Gene ID LotjaGi5g1v0190900
Transcript ID LotjaGi5g1v0190900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Malate dehydrogenase; TAIR: AT5G43330.1 Lactate/malate dehydrogenase family protein; Swiss-Prot: sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic; TrEMBL-Plants: tr|U5G3W6|U5G3W6_POPTR Malate dehydrogenase; Found in the gene: LotjaGi5g1v0190900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:48354812..48357774) extracted from Lotus japonicus Gifu genome v1.2.

AGTTCTTTTGGGATTTTTTATTAGAAAAAAAAGTTATATTATTGACACTTTCTGGACCTTATTAAAATCAATTGTAAATC TATCTTTGTGTTTGTATGAACTTTCTATATTGTCTTTCACAACTTTTCCTATGCATTTTTTGTTGAGTGGGGTTTTCTCT GTAACACCCCATTTGGCCTGCAAACAGATCCATAAAAAGTGGCTTGTATTCATTATACAGAGTAGTTTTAAATTTTGATG CAAAAGCCTTTTGGTATTTTTCTGTCTTTGTTCTTGATAAAGAGTTTGGCCAATTTTAGGACAAATCGGGTATGCTCTTG TCCCTATGGTTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCTATGATCCTCCACATGCTTGACATTCCACATGCAGCC GAATCACTGAACGGCGTTAAAATGGAGTTGGTGGATGCTGCATTCCCCCTTCTTAAAGGTTTGAGTTTCCCTCTTTTTTA AATGTTACATGAACTTCATGGATAGCCATTGTATATGTAGGCTTGATATTGGTTTATGCTGGTTTCTTTAAATGATGTAA AAGAATGGAGGTAATATTAAATGATTTATTTCAGGTGTTGTTGCTACAACTGATGTGGTTGTGGCATGCACCGGTGTTAA TATTGCTGTGATGGTTGGTGGGTTCCCTAGAAAAGAAGGCATGGAGAGGAAAGATGTGATGTCCAAAAATGTCTCTATTT ATAAATCCCAGGCTTCTGCTCTTGAAAAGCATGCTGCTGCAAACTGCAAGGTGATCCTTTAAATCTGAATTCTCTAGTTT TTCTCTTTACGAATTTTTATTTCTAGTGCATCACATTTTATGTCAAACATTCAATTTTGTATTTTCTGTCATTTTTTATG TATCTTGAGTCCCTGGACTTGTTGATCGAGTCTATTGATTGAACACTATTAATATCATGGTTTCCGTGTGATGATGGTTG ATGTAATGCCAATACACTATTAGTGGCTATACTGATTCTATTTTTGTGCCAATGAAGTGGTTGATCCAATGCAGTTTTAT ACTTTTATTTGTATCCTCATTTGTCAAGATTTTGTTGAATTCATGTCCTTGAAATGGAAACTTCACTAGAATAAACATGC ATATTGTTTAAAAGGTTCTACCTAATTCATGTGTAATTGGCTCTTCTACTGTTAAGTCCTTGTGCTTCCATCCTGATGAA ATCCATCTCCGCTTTACATAAAATGAGTATTTAATTTATATTTTGATATTTGAATACATGTGTTTCAGTTTTATGTATTT CTTAGAAATTTTGTAATGTTTTGAACTCTGTATTATTGTGCAGGTTCTGGTAGTTGCTAACCCAGCAAACACCAATGCAT TAATCTTAAAGGAATATGCTCCTTCGATTCCTGAGAAAAACATTACTTGTTTGACTAGACTGGATCATAACAGGGCACTG GGTCAAATTTCAGAAAGACTGAATATTCAAGTTTCTGATGTAAAAAATGTTATAATCTGGGGTAATCATTCCTCAACTCA ATATCCTGATGTCAACCATGCAACTATTAAAACCCCTGCTGGGGAAAAGTCTGTTCGTGAACTTGTTGCTGATGATACCT GGTATGTGTACAGACAAATAATGTCGTACAATTTGAACATTTTTACTCACTTATTTGCTTGATTTCATATTTGTTGAAGG ACTTCGATTTCATATTTATTGAAGCACTGCTGTAATTTTTGTTATCAAGGTTGAACTCGGAATTCATAACTACCGTCCAA CAACGGGGTGCTGCAATTATTAAAGCTAGAAAACTTTCAAGTGCACTATCTGCTGCTAGTGCTGCTTGTGACCACATTAG AGATTGGGTTCTTGGAACTCCTGAGGTTGGTTATGTCTTGCTAAATCGTTAGTTCTGATTCTGTATGATGTTTGTTCAGC TCGGCTTTATTTTTTCATTGCAATATCAGGGAACATGGGTATCCATGGGAGTTTATTCTGATGGATCGTACAATGTACCG GCTGGACTTATCTATTCATTCCCCATAACCTCTCAGAATGGTGAATGGAAAATAGTTCAAGGTAAGAGTTTGGTTAATTT ATGGCTAGGATGCAGTGAAACATTGAATCTTTTATGTGAACCACGATGTTCTTTCACATTCTTAAGTTATTGATATAGCC TTAATATAACTATTGTATAGGTGTTAATTTTTCATGCTTAAACTGCAAAAAGTTGTCTGTTTACTCTTAGCAATAACCTA ATTCGCATTTTCAAGAAATTGCAACTAAATTCGACATGATTCAACAATCACCGTACTCTTCGGTGTGGTTGGGGAAAATA TGTAATCTTGTGCAGTAAGAATTTGAGATTAGTTGGTTTATCATAAGACTAGTGCTTTCCATTGTGAAATCTAGTATAAG ATTGAAGCAGAAGAAGGGAAGGTCTAGCATGAACAGAATTTCATTTGAATCCATAAGAGTTCTGGTCACTTTTATTTTGA AGTGCGTGCTAACGTCAGTTTGCACGAGTGCCAACAGACATCCTAACATAGCGATAATTTTTTTTGAAGTTGAAACTAGT GTGATATGGAGGGTGGTAAAGCAAGGTTTTATACTAATGGGCACAATGAGCCATTTAAGCCTATCTATAGATTCATTTGA CTCCAGTAAGCATGTTTTGGGTAGAGAGAGTCAAACCACACTGCAGTTTATTCTAGGTCAAACAATACATGTTGAGAAAA TAGTAGGTATTCCAAATTCAATATTTTTTCAGGACCTGTACTGCTGTGCTCAAGCCTTGATGTGTAAAATTTAGCCATGA ATTTTTTGTAGAGCAATTATAGCTTTGATGGATGCATCTAATGTGATTCGTCTTACTTTTAAACCCAGGACTTTCAATTG ATGAGTTCTCAAGGAAAAAATTGGACTTGACAGCAGAAGAGCTTTCTGAGGAGAAGGCTTTGGCTTACTCATGCCTCTCT TAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0190900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCTATGATCCTCCACATGCTTGACATTCCACATGCAGCCGAATC ACTGAACGGCGTTAAAATGGAGTTGGTGGATGCTGCATTCCCCCTTCTTAAAGGTGTTGTTGCTACAACTGATGTGGTTG TGGCATGCACCGGTGTTAATATTGCTGTGATGGTTGGTGGGTTCCCTAGAAAAGAAGGCATGGAGAGGAAAGATGTGATG TCCAAAAATGTCTCTATTTATAAATCCCAGGCTTCTGCTCTTGAAAAGCATGCTGCTGCAAACTGCAAGGTTCTGGTAGT TGCTAACCCAGCAAACACCAATGCATTAATCTTAAAGGAATATGCTCCTTCGATTCCTGAGAAAAACATTACTTGTTTGA CTAGACTGGATCATAACAGGGCACTGGGTCAAATTTCAGAAAGACTGAATATTCAAGTTTCTGATGTAAAAAATGTTATA ATCTGGGGTAATCATTCCTCAACTCAATATCCTGATGTCAACCATGCAACTATTAAAACCCCTGCTGGGGAAAAGTCTGT TCGTGAACTTGTTGCTGATGATACCTGGTTGAACTCGGAATTCATAACTACCGTCCAACAACGGGGTGCTGCAATTATTA AAGCTAGAAAACTTTCAAGTGCACTATCTGCTGCTAGTGCTGCTTGTGACCACATTAGAGATTGGGTTCTTGGAACTCCT GAGGGAACATGGGTATCCATGGGAGTTTATTCTGATGGATCGTACAATGTACCGGCTGGACTTATCTATTCATTCCCCAT AACCTCTCAGAATGGTGAATGGAAAATAGTTCAAGGACTTTCAATTGATGAGTTCTCAAGGAAAAAATTGGACTTGACAG CAGAAGAGCTTTCTGAGGAGAAGGCTTTGGCTTACTCATGCCTCTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0190900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVARGVMLGPDQPMILHMLDIPHAAESLNGVKMELVDAAFPLLKGVVATTDVVVACTGVNIAVMVGGFPRKEGMERKDVM SKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEYAPSIPEKNITCLTRLDHNRALGQISERLNIQVSDVKNVI IWGNHSSTQYPDVNHATIKTPAGEKSVRELVADDTWLNSEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTP EGTWVSMGVYSDGSYNVPAGLIYSFPITSQNGEWKIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23382:SF19
1 308 308 1.5E-185 –
TIGRFAM
TIGR01758
1 306 306 2.7E-164
IPR011274
CDD
cd01336
1 305 305 0.0
IPR011274
PANTHER
PTHR23382
1 308 308 1.5E-185
IPR010945
TIGRFAM
TIGR01759
1 303 303 4.3E-141
IPR010945
Gene3D
G3DSA:3.40.50.720
1 132 132 5.3E-47 –
PIRSF
PIRSF000102
2 307 306 2.3E-57
IPR001557
SUPERFAMILY
SSF51735
6 132 127 2.59E-29
IPR036291
Pfam
PF00056
16 130 115 9.9E-26
IPR001236
ProSitePatterns
PS00068
133 145 13 -
IPR001252
Gene3D
G3DSA:3.90.110.10
133 309 177 3.8E-72
IPR015955
SUPERFAMILY
SSF56327
134 308 175 1.85E-63
IPR015955
Pfam
PF02866
134 302 169 1.9E-36
IPR022383

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0006108
Biological process Malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016615
Molecular function Malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030060
Molecular function L-malate dehydrogenase activity Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0190900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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