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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0208300 |
| Transcript ID | LotjaGi5g1v0208300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G08610.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610; TrEMBL-Plants: tr|K7N504|K7N504_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0208300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51001963..51006250) extracted from Lotus japonicus Gifu genome v1.2.
AAACAAACAAACACACTCCACCGCCTGCTATGTTTCTAGTCATAGGGTTTTGGGGTTTTAAAACATGTCTCTTCACTTCT CACTGCTCAGATTATCTCAACCCCATTTTCTTTGACCTTACCCTCTAACTCCCTTTCTTCGTGTTGCTGCTGTTCGCATA CTGTCTCACCCCTCTACCGGTTCTCCCTCCACTCTTCCGTTTCCATTCATTTGCTTGCTGGTGACTGGTGAGTGTGCTCA GAGTCTTAGTGTTAACACTGAAATGGAGATTTTGAACCCTGAATTTGTATCATGTAAAAACCATTTTTTCTAAAGTATAT ACACGCTAGGCATTGTTAATGGTTTATTATTCTGATAAATTATCATTCTTGCTGACCCTTTTCATCTGGGTAATCTTCTG TGGAACTTTGTGTTTGTGTGTATTGTTGTCTTATCCGTTCAATGCATAAACAATCACAGGGTAGAATATGAGGGGCCCGT TTGGAATGCGCTTATGCAAGTATTTGGAAGAACTTATGTAAACAACGTATGACTACTTATAAGCTGTTTTGAGCTTATTT TCATAAGCTGTTCAAAATAGCTTATGAATAAGAGCTTAGGCTTATTGATAACCTGTTTTCAACTTATTTCAATAAATTTC TCAAGTTAGCTTATGATTAAGCGCTTATGTAACAAGTGCTTACGGCGCTTAAATAAGTTGTTTTCCTAAACGCTCTCTAG ATTGTTATGCTTACTAGATTTTCCTTTATATTATTACATATGGTGTCAATAAGAAATTATTATCATTTCCTACTTGTTGT GTGTGATTTCTCTTTATCATACCTAATACAGACTTATTTTGAACTTTTACAGCTTGGATTTTTCGTATCAAGTGAAAAGA GGATAAGGTGAATGCAATATTGTCTGTGCGGATTTTATCAAAGATGGGATATATAGCCTCTATGCAAAATAATATTTTAA GCATCCATCCTACAAATGGTCTGCGAGGTTGTAACAGGCAAGGGAGTACTTCTGGTGCTGGCTCTAATCATAGTTTAAGG AAAAAATCATCTACCCTGCCCCAAATTTCTTCTAATGATTGCTTTTCTACAAATAAATCTTGTTTGGCTCAGAGAAGATT GCAGTGTAGAAGTTTTCAAGGAAGTGCTGTAATTGATAGAGTTAATGAAGTTGACCATGAAGATTGGGGACTTGAAAGTT TTGAAAGGAGAGAATCTGGGGAACTGGTAGATCCTGGCAAGCCTGTGAAGCCTCCACCGTTTGTCAGAAATGATGGGTTC ACCAACAACAAAATTCTTCAGAATCTCTGCACTCGGGGAAGGTTAATGGCTGCAGCAAGGTTGATTGAGATTATGGCACG TAAAAGTCAAATACCCCATTTCCCATCTTGCACAAATTTGATTCGAGGCCTTATCAAGATCGGTCAGATAGATAAAGGTT GCAAAATCATTAACATAATGGTCATGTCTGGGGGTGTTCCTGATGTTATTACGTGCAACATGGTTATTGGTGGCCTGTGT AAAAGAGGGTATTTAAAATCTGCTGTTGATTTGGTAGAAGATATGAGCTTGAGTGGTTGCTCCCCAGATGCGATTACTTA CAATACAATAATTCGCGGCATGTTTGATAAGGGAAATTTCAATGAGGCTGTTAGTTTCTGGAAGGACCAATTGAGAAAAG GGTGCCCTCCTTATTTGATTACCTATACAGTTCTAATTGAGCTGGTTTGCAGATATTGTGGGGCTATTCGAGCGCTGGAA GTACTAGAAGATATGGCAATGGAAGGTTGCTATCCTGATATCATTACGTACAACTCTCTTGTAAGTTTTACTGCTAAACA AGGAGTATATGAGGAGACTTATTTGGTTATATCGAATCTTCTATCCCGTGGGATGCAACCGAATGCTGTAACATACAATA CTCTTATCCACTCCCTTAGTAGCCATGGTTATTGGGATGGAGTTGATGATGTTCTGGAAATTATGAATGAGACTTCCAGT CCTCCAACGCGTGTTACTTACAATATTATGCTAAATGGTTTATGTAAGTCTGGACTTCTAGACCGTGCCATAAGCTTGTA CAGCACAATGGTTTCTGAGAGCTGTTTTCCGGACATTGTCACTTACAATACTCTTCTAAGTGGGTTATGTAAAGAGGGGT TTGTAGATGAGGGCATCCAGTTACTTTACTTGTTGACAGGTACTAATTGTTCTCCTGGGTTGGTCACCTATAATATTGCA ATTGATGGGTTGGCTAGAATGGGATCCATGGAGTCAGCAAAAGAATTGTATAGTGAAATGATAGGAAAAGGAATTGTTCC TGATGAAATTACCCACAGTAGTTTGGCCTGGGGTTTTTGTGGGGTGGACCAACTTGAGGAAGCTATGGAGCTATTAAAGG AGATGCATAAGAAAGATGAAAAGATTAAACATACTGCTTACAGATGTGTAATTTTAGGATTATGTAAACAAAGGAAGGTT GATATTGCAATTCAAGCTCTAGATTTGATGGTTAGAAGTCGATGCAAGCCAGATGAGAAGATATATGATGCTTTAATTAA AGCTGTTGCTGATTCGGGTATGGTGAAAGAGGCTAATGATTTGCATCAAAGGTTGATCGAATGGAAGATTCTTAAAACGG AAATCATTTGAGGTTGGAGTTTGCCCTTAAAGATTTGCCAAATTCAGACCATGTACAGATTTTACATTCCTATCAGGTGA TTCTTTTAAATCTTTCTTGATTGTGGGATTAGGATGCTGTCTTGTTTGGACGGGGTTCGTACTTCCCAAGTTCTCTCTAT TTCTCTCCAATCATGGTAGAAACTAGAGAAAGATAGAGAATCTGGGGAATAGATCCCCTCTTAATGAAAGAGGATTCAAT TCCTTGTTTGTGGGAGCCTTGAATCATCTGTAGAATGTAATGACTAATGATGGCTACCTCCCAAGAGTTTTGTGCTTCTA GTTCGTGCTATTTTTATTTTGACACAGCTACTTCAATGATTATCCTAACTGAAAATATCTGTTATGTTGATGATTATTCA AACGGAAATCATGTCATATAATGTTACATGGTTTAAGTTCGTTTTCCCTTTTTTGGCAGCTATAATTTACGTGGTTTCTT GCATGTTGATAGAACTGGATCAGAATATTGAATAAAAGAATGTTATATTGATGAGAATGTTCCCAACTCATTAGTGATAC CGGTACCCATGGGATACACAATGGGTGAAGGAGACGTAGTGAAGTACAACAAAATATAGACAGAGATAGGGAATAGTAGT GTCTAGCCTCCTAGGTAGTCGAGAGACTTGGACTTTTCCATTCAAACCCTTCCTAGAACTTCCCTCTGTTTCTTTCTTCT GAATATTTATATACAGTCTTGTCCCACCCCTATAACAAACTGCCTCAAACAAATTGATTCCAACAACTAATCAGGTGGGA TTACCTGTGTGTCTACAATCCTTATTCATCTTCAGTGTTATTATATTTTACTAATGTAAGCACAGTTTCCTTAAAACTAA AATTAGTGTACCTAGTGCTGTTTTGATACTAAACAAATGAATTGTCCTTGGTATGCTAAGGCTATGAAAAACTGAGTTAC TTGCAATCAATTGCTTGAATTTTGATTTCATTCTCTGACGTGATCTTATCAGAAAACTAGAAGTAACATTGTATCTAGCA TTGTTTATTAATAGCTGCTGATTTTACTGTGGTTATTTTTGAATGCCAGGAAAGCTTGTTAAGAAGTTTTGACATTGAGA CTGCAAGGGGAGACAATATCATTTCAGCAGGAAATAAAATTTGAATAGTTGAAGTCAACATGAACTTATCTTTGTCTAAG TTACTTTTAATGTAAATCTGATTTTCAAGTTTGCAGATTTTAGATAACTCCATGAGTGTAGACAATATATTATGAACCTT TTGTTGGTTTTGGTAGTTATAAATTCATTCCTGTTAAAGTGTTATAGTATAGTACCATAATATCAACACACTACCATCTC ACCAAGATTGTCGATAGTTATTACGCTGCATGCCTACATCTGATCTGAGGATTTTTTCTGTCTTAAGAATTTGGTTCATA AGTATGGAAGTTGTGTAGAAGAAGTATGAATGCAAAATTGGGATATTGGTATTGTGCACATGTGATTCATTAATCCTGAT ACTAGTTTGATCTTCAAGTTAAGGTTCTAGTGTAATGTAACTCATACTTCTGTTTTTCTTAATCATTTAAGGAGGAAAGA AAAGATTGAAAAACAAGTGCTAATTTTGGGGTCTTAATTTTTTTTTTT
CDS sequence (LotjaGi5g1v0208300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATATATAGCCTCTATGCAAAATAATATTTTAAGCATCCATCCTACAAATGGTCTGCGAGGTTGTAACAGGCAAGG GAGTACTTCTGGTGCTGGCTCTAATCATAGTTTAAGGAAAAAATCATCTACCCTGCCCCAAATTTCTTCTAATGATTGCT TTTCTACAAATAAATCTTGTTTGGCTCAGAGAAGATTGCAGTGTAGAAGTTTTCAAGGAAGTGCTGTAATTGATAGAGTT AATGAAGTTGACCATGAAGATTGGGGACTTGAAAGTTTTGAAAGGAGAGAATCTGGGGAACTGGTAGATCCTGGCAAGCC TGTGAAGCCTCCACCGTTTGTCAGAAATGATGGGTTCACCAACAACAAAATTCTTCAGAATCTCTGCACTCGGGGAAGGT TAATGGCTGCAGCAAGGTTGATTGAGATTATGGCACGTAAAAGTCAAATACCCCATTTCCCATCTTGCACAAATTTGATT CGAGGCCTTATCAAGATCGGTCAGATAGATAAAGGTTGCAAAATCATTAACATAATGGTCATGTCTGGGGGTGTTCCTGA TGTTATTACGTGCAACATGGTTATTGGTGGCCTGTGTAAAAGAGGGTATTTAAAATCTGCTGTTGATTTGGTAGAAGATA TGAGCTTGAGTGGTTGCTCCCCAGATGCGATTACTTACAATACAATAATTCGCGGCATGTTTGATAAGGGAAATTTCAAT GAGGCTGTTAGTTTCTGGAAGGACCAATTGAGAAAAGGGTGCCCTCCTTATTTGATTACCTATACAGTTCTAATTGAGCT GGTTTGCAGATATTGTGGGGCTATTCGAGCGCTGGAAGTACTAGAAGATATGGCAATGGAAGGTTGCTATCCTGATATCA TTACGTACAACTCTCTTGTAAGTTTTACTGCTAAACAAGGAGTATATGAGGAGACTTATTTGGTTATATCGAATCTTCTA TCCCGTGGGATGCAACCGAATGCTGTAACATACAATACTCTTATCCACTCCCTTAGTAGCCATGGTTATTGGGATGGAGT TGATGATGTTCTGGAAATTATGAATGAGACTTCCAGTCCTCCAACGCGTGTTACTTACAATATTATGCTAAATGGTTTAT GTAAGTCTGGACTTCTAGACCGTGCCATAAGCTTGTACAGCACAATGGTTTCTGAGAGCTGTTTTCCGGACATTGTCACT TACAATACTCTTCTAAGTGGGTTATGTAAAGAGGGGTTTGTAGATGAGGGCATCCAGTTACTTTACTTGTTGACAGGTAC TAATTGTTCTCCTGGGTTGGTCACCTATAATATTGCAATTGATGGGTTGGCTAGAATGGGATCCATGGAGTCAGCAAAAG AATTGTATAGTGAAATGATAGGAAAAGGAATTGTTCCTGATGAAATTACCCACAGTAGTTTGGCCTGGGGTTTTTGTGGG GTGGACCAACTTGAGGAAGCTATGGAGCTATTAAAGGAGATGCATAAGAAAGATGAAAAGATTAAACATACTGCTTACAG ATGTGTAATTTTAGGATTATGTAAACAAAGGAAGGTTGATATTGCAATTCAAGCTCTAGATTTGATGGTTAGAAGTCGAT GCAAGCCAGATGAGAAGATATATGATGCTTTAATTAAAGCTGTTGCTGATTCGGGTATGGTGAAAGAGGCTAATGATTTG CATCAAAGGTTGATCGAATGGAAGATTCTTAAAACGGAAATCATTTGA
Protein sequence (LotjaGi5g1v0208300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYIASMQNNILSIHPTNGLRGCNRQGSTSGAGSNHSLRKKSSTLPQISSNDCFSTNKSCLAQRRLQCRSFQGSAVIDRV NEVDHEDWGLESFERRESGELVDPGKPVKPPPFVRNDGFTNNKILQNLCTRGRLMAAARLIEIMARKSQIPHFPSCTNLI RGLIKIGQIDKGCKIINIMVMSGGVPDVITCNMVIGGLCKRGYLKSAVDLVEDMSLSGCSPDAITYNTIIRGMFDKGNFN EAVSFWKDQLRKGCPPYLITYTVLIELVCRYCGAIRALEVLEDMAMEGCYPDIITYNSLVSFTAKQGVYEETYLVISNLL SRGMQPNAVTYNTLIHSLSSHGYWDGVDDVLEIMNETSSPPTRVTYNIMLNGLCKSGLLDRAISLYSTMVSESCFPDIVT YNTLLSGLCKEGFVDEGIQLLYLLTGTNCSPGLVTYNIAIDGLARMGSMESAKELYSEMIGKGIVPDEITHSSLAWGFCG VDQLEEAMELLKEMHKKDEKIKHTAYRCVILGLCKQRKVDIAIQALDLMVRSRCKPDEKIYDALIKAVADSGMVKEANDL HQRLIEWKILKTEII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 18 | 44 | 27 | - | – | |
| Gene3D | 106 | 216 | 111 | 6.0E-15 | ||
| ProSiteProfiles | 117 | 151 | 35 | 7.936 | ||
| PANTHER | 123 | 301 | 179 | 1.4E-124 | – | |
| PANTHER | 123 | 301 | 179 | 1.4E-124 | – | |
| ProSiteProfiles | 152 | 186 | 35 | 7.914 | ||
| Pfam | 155 | 183 | 29 | 0.18 | ||
| TIGRFAM | 155 | 188 | 34 | 0.0011 | ||
| Pfam | 186 | 233 | 48 | 5.6E-15 | ||
| ProSiteProfiles | 187 | 221 | 35 | 11.696 | ||
| TIGRFAM | 189 | 223 | 35 | 1.5E-8 | ||
| Gene3D | 217 | 285 | 69 | 5.6E-15 | ||
| ProSiteProfiles | 222 | 256 | 35 | 11.926 | ||
| TIGRFAM | 224 | 256 | 33 | 8.2E-7 | ||
| ProSiteProfiles | 257 | 291 | 35 | 8.035 | ||
| PANTHER | 279 | 498 | 220 | 1.4E-124 | – | |
| PANTHER | 279 | 498 | 220 | 1.4E-124 | – | |
| Gene3D | 286 | 354 | 69 | 8.6E-14 | ||
| Pfam | 291 | 339 | 49 | 6.2E-9 | ||
| ProSiteProfiles | 292 | 326 | 35 | 9.591 | ||
| ProSiteProfiles | 327 | 361 | 35 | 10.271 | ||
| PANTHER | 329 | 549 | 221 | 1.4E-124 | – | |
| TIGRFAM | 329 | 361 | 33 | 2.8E-4 | ||
| PANTHER | 329 | 549 | 221 | 1.4E-124 | – | |
| Gene3D | 355 | 423 | 69 | 4.5E-20 | ||
| Pfam | 361 | 410 | 50 | 4.4E-17 | ||
| ProSiteProfiles | 362 | 396 | 35 | 12.386 | ||
| TIGRFAM | 364 | 398 | 35 | 5.2E-10 | ||
| ProSiteProfiles | 397 | 431 | 35 | 11.564 | ||
| TIGRFAM | 399 | 431 | 33 | 1.9E-6 | ||
| Gene3D | 424 | 500 | 77 | 3.4E-18 | ||
| Pfam | 431 | 479 | 49 | 1.6E-11 | ||
| ProSiteProfiles | 432 | 466 | 35 | 12.211 | ||
| TIGRFAM | 434 | 468 | 35 | 7.8E-10 | ||
| ProSiteProfiles | 467 | 501 | 35 | 9.229 | ||
| Coils | 481 | 501 | 21 | - | – | |
| Pfam | 490 | 549 | 60 | 0.0079 | ||
| Gene3D | 501 | 574 | 74 | 1.6E-11 | ||
| ProSiteProfiles | 502 | 536 | 35 | 9.295 | ||
| TIGRFAM | 505 | 538 | 34 | 5.7E-6 | ||
| ProSiteProfiles | 537 | 571 | 35 | 8.55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0208300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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