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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0209500 |
| Transcript ID | LotjaGi5g1v0209500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor family protein; TAIR: AT5G29000.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|G7I6T3|G7I6T3_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi5g1v0209500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51261850..51266388) extracted from Lotus japonicus Gifu genome v1.2.
ATACAACGTCCACTGAATCAAACGGTCCAGAAGTACGGGCATTCAATCGCGTGCGATGCATAGAATCATTATCTGTGGAT TGTCAAAGAGAATTTTGCAATGAATAATAATCCAATCACAATAAAGGGGTCAATTCAATTCGCCTCGTACGTCCTCTCAT TCGTTTCACCAGCCAGACGCCAATCACAATCCAAACAACACACTATGAATTGATTCAAACTGCTTCTGCTTCTGCTTCTG CTTCTCCTCTTCCGCATTTCAGGTTCGATCACTCTTTCAATTCTTCAATCCAATTCAGTTCGATTCCAATTTCAATTTAT CGGTATTCAATCTGTTTTCTCTACATGACACTCTGCTTATTATTATTTTTGCTTAATTTTGGATTATCAATTTGATTATT TTTTCAAAATTTTATCTCATATCATATTTGATTCCATATATATGAGTTTTGAATTTTGATCTGTTTTCTCTGCTCTGAAT TGACTCGATTATGGTGATGGAGGGAATAATCAATAAAGGCATCTTGTATGGTGGATCATTCTTTTTCTTTTCGTTTCTTA GGGTTATAATCAGGCTTGTTAATAGCGCGTCATAGCGGCGCAATAGCGTTATAGTGTAGTGCCCTGGGGTTGACCGCTAC TCCACTATTCACCGCTATTTGCCATTATTGTCCGCTATTTGCCGCAATAGCGCTTGAAATAGCGTTTTTTGGGCTTGCCG CTACGCTATGCTATCTGCCATTAACAACCCTGGTTATAATTGGATTTCACTCTATAGTTTCTACTTGCAGTTTTTTATGG ACTTTGTTAATGTAAAAATTTAAAGTAGATTATGTGGTTGGCAATGGCAAACACAATTTTCATTAGTGGTTGAGTTATTG ACATGGAACTTACTTTTGTTATTGGAATTAGGTGCTGATTGCTGACTGATAGCCACCGGAGCTATGTCTTCGTCTTTTCC TGTCTTTCGGTCTTCCTCGGCGCAGGCTGCGTCGATCAATTCCAACGTCAGGGGTGCTGGGCACATGTTTTCAGCCCCGG CTGAGTTCCCTGATGACATCCCTTTTTCGGCGGTTTCAGAATTACATTCGTCTTCAGCATTCGTTGCTCACCCTGGTGAT GTTTCATGGGGACCGGATCCGTTTCAGGATATTCTTCAGTTTTCTGATGATGTTTCCATCCAGAATGATCTCATGGAATA TAGTGCTCCCTACGTGTCCGGTGACAATGCGAAAGCAGCTGATATCGGGGAGTGGGTTGAACAGTTGATGTCAGCTGATG AGCCTCCTCATCCAACTTGGAATCAAATTCTCGGCGATGATAACGTAACAGAACCAAGTTCAAAGGTTTGTTTCGTAATA TGATTTTAATATTGTACTGCAAGGTCTTAAAGTGCTTGCTCTATATGGTCTTAGAACCGTGGTTTTATATATGATCTAGT TACTGATGCATAAAATATCCTATAGTGTTCTCTCTGTCTTATTTTCTGTCATCCGCCACTTATTATGTGGAGGATTATGA TTTGATTTAGATTTTTGGTTCATTTAGGTTCTTTTTGTTTTTTTCAAACTTAATTCATCACCATATGCATGTGAGTATGT GTATATAGTTCCTTCCCTCTTCCCTTTCATGATGTGTTTCTGTATAGTTTGAAATTTTGTTTTCTTTTCCATCTTAACTT TTTCTCGATAACGTTATTTACATAATTGATTATTTTAATGCATAAGGTGCAGAAATGTATCCTTCTCTCTTGATGCAGGA GGCCCAGGTTTCACAGCAACAGCATGTGCCATCTAGAGAAGCAAATGATCTTCCTAATTCTGCGTCGAATGCACCACAAA CTAAGCCTCGAATGCGTTGGACCCCAGAACTGCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGGGGCAGTGAGAGT ATGTTCAGTTCTCCTTACTTTTGCATTTCTTGACTTTCTTACAAGCAGAAACATTTCAGGTGTTCCTTACTTGTTATCTC ACGGTGTTAATATGCAGAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGA AAAGCCACTTACAAGTACAGATTTTTATTTTTTGTAACAGGCTTGTCTTCAACGTCTACACTTAATAGCTCTTTTATGGG TGTTTGTCTAAAAGGTTTTTAACGAATTATTTGTTCTTTTAATTGCAGAAGTATAGAACTGCTAGGTACAAACCTGAGTC ATCAGAAGGTATGCCTAAGTCTATATAACAGATCTGCTATGCATTAAACAGGTTGCTTCTTAATTTTGTTTCTGGCTTAT TGGGCCTCCTCAATTCTCAGTCCTCAGTTTTCAAGAACGATATTTAGTTTGCAAAATAAAATGCATTTGTTTTGTATGCA TTGTCCTTTTTCATGCTTTCTTAGTTACACGTTCATTGTTATTTTCTCCTCTTCTCATTAGGGTTTCATTGCACTTTATA AGCACGTAAATATGCACATGCACCCTTTCTTAGAGTGAGAATAATGTATAATGATGTTAATAAATTTTTCTTCACTAGAT ACAGGAACTCCTGAACACAAGTTGACTTCAATAGAAGAAATGAAGTCTCTTGACTTAAAAACGTGAGTGCCCTTCTCCAC TTTTCTATGTTTTTGTTTCTTATTGTATTGATTGATCTTTTTGCTGATATCTCTTGTTGCATGCATGGAGCAGAGTGTAA TGCTCACTTAATATAACCTCTCTTATTTATCATATATTTGAATTTAAGATATAACCTAACTAAGATGTGCTAAAATCTGG TCCTCACAAATCTAATGTTCACTACGATTATGATACTGTCTGCATTTCCAATATAGATAGTTTTTCCAATTAATATATTT GCATTGTTGTGAATAATTAATATTCAATTCAGAAGCATACTTTGGGTTGTGGTTGTAGGAGTAAGGGTATTACTGAAGCA CTGCGGCTGCAGATGGAACTACAGAAGCGGCTTCATGAACAACTAGAGGTACTTATTGGTAGTTAAGATTGGTTTTGTCT TTACTGTGTAATCCTGGGGTGGAGGCTAGGACTGTTGTTTATCTCCCCAAAATTTGTCGAGGCACAAGCTCAAAGGGAAG CTTGGAAGTTTTGAAAGGTTCTGATGTTATAGCTATTATGCAGGATCAAAGAAAATTGCAGATTCAAATTGAAAACCAAG GGAAGCGTCTTCAGATGATGTTTGAGAAACAGATCAAATCGGATGAGCCTTCTGCTTCACTATCAAAGGCAGTGTTACCT TCTCCAGCTGACAATTTAGAAACCTCAAATGAGGGTCATGAAAAAGCTGGAATCAGCAGTAGCACACCGGAAAACTTACC CGAAGAAAGTTCCCAAGATAGAGGTGATGCTAAAGTTACTGATGAACATGAGCTGGTAGATGACCAATTTTCTACACCAC CAACAAAACGGGTAAAGACTCTGTAGAGTTGATGAAAGCATAATAAATCTCAAGTTTATAGAGGCGTACAGTGTTTCTGC TTCTCCAAATAACTTGCTGGAATTACCCTTTCTTCTTATGACTGTGACTTCCTTAATCAGTGATTTGGTTTCTAGTTTTT ATTTTTTGCCCCTTAATTTGGGGTAAACTTTGGTGAACGAAGTTTTACTCCAGGTATTTGTTGTATATTCTCAATGAATT CTTGATAGCTCAGACACCTTGAAGCTTCTAGGAATCTCATCGGATCCGGGGATGTTTTCATAGATCTAGATTTTTAGCGT TATGTAAGGTTTGACTGTCGGCCAATTGAAGTTTTGAACATCTTTTTTCATGCATCATTTGTCTCTGTTTATTTTTGGGG TTGTCGGAGTTCATTTTGGGCCTAAGATTATATAGGTTTGGTATGTACTATTTGTGACCAGATAGGGTCTTTTTGGAGTT TATATACTAGAAAATGCATTAAAGAAACTCTTTTTTTTTCAAAGATGAATAGAATTAGAGCATAAGCCAAACGGCACTTA CAAATCTAGGGTATCAAAGCACTTACAGCATAGCACAATAATTACACATTACAAAATAGGCTAACATGCTCTAATGCACT TAAACCAGACCAGTAAACCCAAACATGAACAGAAATCTACCATGACCCTGACCATAACCAAAACATGAACAAAAAACTAA CACAACCAGATCCAACAAACAAACTCAGAATCTCCATCCAATTTTTTATGTCACTTTCAAAGCGAAAATTTAATTTTATA ATTTGTATCGCTTCTAATTTTCAAGCCTAGCCAGCTCTGGCGGAACAACAAAAGATCACTTGCAACAAGGCTAACATCAA CAAATGGTACTCTTCAAGCACCACCAAAACATAAACCGAGAGGAGCAGAGAGCAAGCATGCTAGAAAGAGATGGAATGCA CAACATCACAGGATCAAAGGAGAGTAATGGGTCCAGTACCCGCAGGCGGTGCTTCCGGGTGGTTGCTGGTGGCCGTGGAA GGTGGCGTGGAGGCCGAAGGTTTAGCTGTTAGGTGGCTGAAGTACAAGAGATAACAAAG
CDS sequence (LotjaGi5g1v0209500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCGTCTTTTCCTGTCTTTCGGTCTTCCTCGGCGCAGGCTGCGTCGATCAATTCCAACGTCAGGGGTGCTGGGCA CATGTTTTCAGCCCCGGCTGAGTTCCCTGATGACATCCCTTTTTCGGCGGTTTCAGAATTACATTCGTCTTCAGCATTCG TTGCTCACCCTGGTGATGTTTCATGGGGACCGGATCCGTTTCAGGATATTCTTCAGTTTTCTGATGATGTTTCCATCCAG AATGATCTCATGGAATATAGTGCTCCCTACGTGTCCGGTGACAATGCGAAAGCAGCTGATATCGGGGAGTGGGTTGAACA GTTGATGTCAGCTGATGAGCCTCCTCATCCAACTTGGAATCAAATTCTCGGCGATGATAACGTAACAGAACCAAGTTCAA AGGAGGCCCAGGTTTCACAGCAACAGCATGTGCCATCTAGAGAAGCAAATGATCTTCCTAATTCTGCGTCGAATGCACCA CAAACTAAGCCTCGAATGCGTTGGACCCCAGAACTGCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGGGGCAGTGA GAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCACTTACAAA AGTATAGAACTGCTAGGTACAAACCTGAGTCATCAGAAGATACAGGAACTCCTGAACACAAGTTGACTTCAATAGAAGAA ATGAAGTCTCTTGACTTAAAAACGAGTAAGGGTATTACTGAAGCACTGCGGCTGCAGATGGAACTACAGAAGCGGCTTCA TGAACAACTAGAGGATCAAAGAAAATTGCAGATTCAAATTGAAAACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAAC AGATCAAATCGGATGAGCCTTCTGCTTCACTATCAAAGGCAGTGTTACCTTCTCCAGCTGACAATTTAGAAACCTCAAAT GAGGGTCATGAAAAAGCTGGAATCAGCAGTAGCACACCGGAAAACTTACCCGAAGAAAGTTCCCAAGATAGAGGTGATGC TAAAGTTACTGATGAACATGAGCTGGTAGATGACCAATTTTCTACACCACCAACAAAACGGGTAAAGACTCTGTAG
Protein sequence (LotjaGi5g1v0209500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSFPVFRSSSAQAASINSNVRGAGHMFSAPAEFPDDIPFSAVSELHSSSAFVAHPGDVSWGPDPFQDILQFSDDVSIQ NDLMEYSAPYVSGDNAKAADIGEWVEQLMSADEPPHPTWNQILGDDNVTEPSSKEAQVSQQQHVPSREANDLPNSASNAP QTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEDTGTPEHKLTSIEE MKSLDLKTSKGITEALRLQMELQKRLHEQLEDQRKLQIQIENQGKRLQMMFEKQIKSDEPSASLSKAVLPSPADNLETSN EGHEKAGISSSTPENLPEESSQDRGDAKVTDEHELVDDQFSTPPTKRVKTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 347 | 309 | 3.0E-119 | – | |
| PANTHER | 39 | 347 | 309 | 3.0E-119 | – | |
| MobiDBLite | 111 | 164 | 54 | - | – | |
| MobiDBLite | 122 | 164 | 43 | - | – | |
| Gene3D | 159 | 221 | 63 | 3.3E-29 | – | |
| ProSiteProfiles | 160 | 220 | 61 | 11.495 | ||
| SUPERFAMILY | 161 | 217 | 57 | 5.55E-18 | ||
| TIGRFAM | 163 | 217 | 55 | 2.7E-25 | ||
| Pfam | 165 | 216 | 52 | 9.1E-9 | ||
| MobiDBLite | 217 | 236 | 20 | - | – | |
| Pfam | 252 | 296 | 45 | 4.3E-19 | ||
| Coils | 253 | 273 | 21 | - | – | |
| MobiDBLite | 295 | 371 | 77 | - | – | |
| MobiDBLite | 312 | 338 | 27 | - | – | |
| MobiDBLite | 339 | 360 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0209500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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