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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0217200 |
| Transcript ID | LotjaGi5g1v0217200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated protein 1-2; TAIR: AT1G08820.1 vamp/synaptobrevin-associated protein 27-2; Swiss-Prot: sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2; TrEMBL-Plants: tr|A0A0R0EF48|A0A0R0EF48_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0217200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52333051..52338328) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAACCTTCCATATTTTCCATTTTACCAATTTTTCCCCCTTGTGCAATTCAATAACCCTCTGTTCTCTTCTCTGTCTA CTTCACTCTCACTCTCACTCTCACTCTCACTCTCACAATCCCCATTTCAAACAAGATCACGATTCACACGCCTTTTCTCA ATCAATGATCGTTCATTCAAACAAGAAGAAAATCTCCTACTACCATAATCACTTGATTCCATTGATTTCATTTCCCTGCA ATCTTCCTTTCTGCTTCAAACGCTTGCGATTCATATAACTGCTATCTGGTATGTTAATTCTCCCACTGAATTTCAACAAC ACTCCATGTTCTAACACTTGATTTCTCTTGTGATGTGATTCCTCTGTTTCAGTGAGTTGAGTTCAATCGTTGAGCTCAAA CGACTTCACTCAAACACCGTCTTTTTAGGTCTCGATTCTGGTTGTTGAAATCATGAACAAAGCGCCGATTCTTAATATTC AACCCAGGGAACTCCAATTTATATGTGAGTCAATTTCCTTGCTCAATTGCTCATGCATGTGGTTCAATCTCTGCTGTAAC TTTCTGCATATGTGTGATCAATTCAATTGACTAACGTGTTTTGATTTCCTTTTCTTCCTTTGTAGTTGAATTGAAGAAGC AAAGCACATGCTCAGTTCAGTTGACTAACAATACTTACCACTATGTTGCTTTTAAGGTCTGATTAGTGCCCCTTTCTTGG TTTCAGGCATGAAATAATGGAGAGATTTATCGTTTTGGTGTGATATTTGCAGGTCAAGACGACGTCGCCGAAGAAATATT CAGTGCGGCCAAATGTTGGAGTTCTTGCACCAAAATCGTCTTGTGAATTCATAGGTATAATTTAATCAGTCCTTTTTTTT GTGTTTGCTTGTTATTTTTCTTTTAAAACTTGACTTGTTATTTTGTATTTGTGATATTGTAAGTTTAAAATTGACTTTAT TTGACTGGATGTGTTAGATTCAATTCAATTATTTCTGGTTGGTGGTATCTGAAAGAGGTTTTTGTGATCCTCTGGTGGCT GATGCATATGAATCTTATTCGATTTTAGAGCTTTCTTAAGAGCAAGTTTAGTAATTTTGGTGGCTAATTTATGGGGCAGA TGCTAAATGGAACTGAATTTGGCATGTTAGAGTTTTCTTTGATTGCCTTCGGATTGCTTTTTGATGTTAAATTGTTGTAA TTCAAGCTTAACATATCCTAGCAGCAAGCACTTTTCAACAAAAAGCAATTTTTTGAGGAATACCAGTTTTTCAATAACAA TATTTAAAGATGAATCCACATATTTCAGAATTTATTCTAGCTTCTTAGCCCCATTTGGCCCCAATTTTTTCTGGTTTTGA CGTTTGCATCAAACAGTTACAATGCAAGCCCAACGGGTAGCGCCTGAAGATATGGTGTGCAAGGACAAGTTCTTAATTCA GAGCACATTTGTTCCTGCTGAAACAACCAGTGAAGATGTTACTTCCACACTGGTATGGAATATGGATATTTATTAGGGTG TAGTTTTGTACTGTGGCGGTTTTTTATTATTCATTCCATTCTTTTTTAAATATTTCCAACTTTTTTTTGGTGATGACAGT TTGTCAAAGATGCAAGTAGATATATTGAAGAAAATAAGCTGAAGGTGGCCCTAATCAGCCCACCTGATTCTCCAGATTTC TCCCATACTAGTGGAGAATCTAAGAATGGGCTTGATCATGAAAAAGTTCAGATATATAGTAAAGATGAAATCCAATCTCC TGAAGCTATGGTCAAAGGAAACTTCGTTGATGCTTGGGTCTCAGTTCCTTTCTTTGCTCCATCTCTTTTTCTTTCATAGA TATTTCATATCCCTCAGAAAGATAATTAAATTTCTTGGTTACATATTCTAAGGGTTTGTTGGTTATTTTTTCTGGATTGT TATTTCCATAATTTGAAAAATAAATTGCTATGGTGTTGCAGACCTGCCTTGACCTTCCATTTTCCTTGAGTCTTTGGGAA GGCACTCTTTAAACACTTCATGAATTCCCATCTTTTTTGGTGCCATCATGTTTTCTGCAGTTGTTAGCCTTTATGCATGC GTTTGCATTGCTTATCCCCTAACTTCCATTTATACTCCCTAAATATGTCATTCATATGTTTTTTTCTGTTCCTGGAATAT TTCAGGATCTTAAAAAGGTAGAGAATAACATTGTTCATGAAGTAAAACTTGAAGATGATATGGAGTTGAAGCCAGAGCAT GATACGGTGTTGGAAACTATAAATGACGTAGGGATGCCAGAAGAAGAAACAGGTTTAAAAGTGTCCAAAGATGAGGAGTT GAACACAGTGAAGGATGTAGAGGAACTGAAGCCGCAAAAAGAATTAGAGCTAGAAGTGTCAAAAGATCTGGATTCAATCA CAGTAAAGAATGCAGAGGAATTAAAACCAGGAAAAGAAGCTGAGTTTAAAGTGTCAAGAGATCCGGATTTGAACAAGATA AACAGAGAAGAGGAACTGAAACCAGGAAAAGATGTTGAGTTGAAAGTGTCAAAAGATCTGGATTTGAACACAATAAACAG AGAAGAGGAACTGAAACCAGGAAAAGATGTTGAGTTGAAAGTGTCAAAAGATCTGGATTTGAACACAATAAACAGTGCAG CGGAACTGAAGCCAGAGGAAGAATCAGAGTTAAACGTGTCAAAAGATCTGGAGGAGTTTAACACTGTAAAGAATGTTCAG GAACTGAAGCCAGAAAAAGAAGCAGGCTTACGAGTTTCAAAGGGTATAGAGGAGCTGAAATTAATGGAAGCTATTGAAGA GATGAAGTTAAAATTAGATGGACTTGAGGCAAAGCTAAATGAGGTCAGGCATTTCCCTATGTTACTATGGAATTTTTTAT CTGCTTTCATATGTGACATGCTTCCTATTTCTTTTATAAGCTGACATGTTTCGTATTATAAGATGCATGCGGAAGTGATG GGCTTTACTGCTATCACATCAAGAGCTTGGTCATTAATGTTTTCTATTTTTGGGCTTTTTTCATTTAGAGGTTTGAGATA TTATATGGAACCTTTCCAGCTTATGATAATATTTATTGGCACAATTATTAAATCGTACTGCTTCACAGACTTTGTGTGAC TGTGATTATGATTTGTCAATGAGCATGCTTGATCCTTATGTACATCGCTCTTTCCTTCCCTTCATTTGATTTAGTTTTAT ACACATGGTCTGAGATCTGCTACATTATTTTTCACACAATTTAAGTTGGGATTATGAAAAGGCCACAGAGGAGGCAGCAA ACACTGCCCTTATATGTATTTTTGGTTGTATGGCGTGTGTGTTGCATGATTAAGGTCTACAATATGGTAAAACTGTATGA ATATAATCAATCATCTGTCCTTTTAACTTGATTAGTTTCAAGGTTTCTGACATTCCTACAGGCTCCATAGAATGTCAAAT TGTTTTTCAATGTATTGTGTTGTATGTTATAACTTATACACTGGCTATGAAACAATGTGGCACGTGGGTGGGTTTCCTCA TTAAAATGGGGTGGATGTTTGTTATAGTGGTTCTTGAGTTTTATGCTAATAGTGATTATCAAGTTTCTTCTTCCTTTGCA GTCTGGAATAACAATATCAAAGTTAACAGAGGAGAGGAGGCTAAACAATCAGGAGGCAAAGATCTTGCAACAAAAACTAG TAAGCTTGAGATTCTCCTTCTAGTTTTACCCGTAATTTTTGTGGCATTTACTTATTGGTTCTTCCCAAAATCCTGGATGG TTGCCTAATGCAATTTATCATTTAGAAATTGAAATACTATCTTTTATACAAATGGTGCTAAATTTCGTGTGTTTGGAGGG GGGTTATATATTAACGTTCACTCGTTCAGGCATCTGGTCTTTCTTTTACTTATTTTTTTATATTTGTGTTAAGATGATCA TTAGTTGCTCTGGAGCTTGTTAACAAATCATAATCAAACACCTGCAGTAAAGAACAAAATTAGAGGGGTAACCACATCCA AAATTGCAACTGAGATTGGAAATTTCAGAATTCTTCTTCATTTACACCTGCTACTTCAGAATTCTTCTTCATATACATGC TTGAACTTGTGCAATTTTATATTGTTCCCTCAGTTAGAGTGTCTCCCTATGATCGTGTAAAAATTGAGTAGACTTCATTT CATAAATTTAAGGTTGGCTCGTTTTATATCTGCAGGACGATCTTATTAATAAAGGTCCTAGAAAAGTTCAAGTTGGATTT CCTTTTCTATATGTCTGCATGGTGGCGCTCATCTGTGTCTTCTTGGGATACCGTTTACACTCTTGAATCTTGATATCCGG GGATCGATCATCCAGGAAGCTATTAACATTTTGAATTGCTTCAAGTTTGTTGGTAGCAGAAGTTTAGGTGCATAATTCTG TGGTATATCCATAAATGTAATAGGAGATCTTTATACTTGAGGTCCGTAATGTTTTATCTGATCAATCTAGGTTGTAATCA GGTATGTCTCCGCTTTTGTATATGCGAAGTTGGTCTTTTAAGGTACAGATAACATGAGATATATAGCAGTCAGGTAGATG ACTGAAATGATTAGTGGAAAACTGCACAAGCAGTGGTGTAACGCTACACTTAAGATTGTTCTCCTGTTCTTTGTCAACGA CACATTGATCAGTGTTTCTGTCAGTTGTGGCGTGAGTGAGTACCAGCCGTGACAGGGCATCTAATTTTAATGTTGAAACT TGAAAGTATAGTATTCAAATACAAGTATACAACAGAATTTACCTTTGGAAAAGTTAGTGATGTTTCTTTCTTTGATGGCA AATTATGACTGAATGTGGGAGTTGCTGCGGGAACTTTCGCAATTTGGGGATTTTTTTATCGTGTGAGATGGAATGAAAAG AAATACACAGAAACAAAGATAAAGCGTTACATCGGCTTGCAACATAGGGCTGAGCTCAAGGAGGTTGATGAATAGTTAGA GAATTTTGCTCCAAGCTTTTCAAGAAGATATGGATCCAATTTTCGTAAGATGGGAATATGTAATAATTTTGAAACAAATT GTAAAGTATGTGTTGTAAGTGGTAATTAGGCGGTGACTTTTAATTAAGGACAGGTGTGAAAATATGATTTTTCTGTAAAA AGTGTATGGATTAGAAAACCCAAACAGACCGGGTTTAATGGCACTAACAAGGGATCACGACCCCTATTATGAATTATACA TCAGAGCTAAAATAAATTTACAATGGTAGATAAACTAACACCTCCAAAACCTCCTCAGAATGTTACGCTCCAGCTTTT
CDS sequence (LotjaGi5g1v0217200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAGCGCCGATTCTTAATATTCAACCCAGGGAACTCCAATTTATATTTGAATTGAAGAAGCAAAGCACATGCTC AGTTCAGTTGACTAACAATACTTACCACTATGTTGCTTTTAAGGTCAAGACGACGTCGCCGAAGAAATATTCAGTGCGGC CAAATGTTGGAGTTCTTGCACCAAAATCGTCTTGTGAATTCATAGTTACAATGCAAGCCCAACGGGTAGCGCCTGAAGAT ATGGTGTGCAAGGACAAGTTCTTAATTCAGAGCACATTTGTTCCTGCTGAAACAACCAGTGAAGATGTTACTTCCACACT GTTTGTCAAAGATGCAAGTAGATATATTGAAGAAAATAAGCTGAAGGTGGCCCTAATCAGCCCACCTGATTCTCCAGATT TCTCCCATACTAGTGGAGAATCTAAGAATGGGCTTGATCATGAAAAAGTTCAGATATATAGTAAAGATGAAATCCAATCT CCTGAAGCTATGGTCAAAGGAAACTTCGTTGATGCTTGGGATCTTAAAAAGGTAGAGAATAACATTGTTCATGAAGTAAA ACTTGAAGATGATATGGAGTTGAAGCCAGAGCATGATACGGTGTTGGAAACTATAAATGACGTAGGGATGCCAGAAGAAG AAACAGGTTTAAAAGTGTCCAAAGATGAGGAGTTGAACACAGTGAAGGATGTAGAGGAACTGAAGCCGCAAAAAGAATTA GAGCTAGAAGTGTCAAAAGATCTGGATTCAATCACAGTAAAGAATGCAGAGGAATTAAAACCAGGAAAAGAAGCTGAGTT TAAAGTGTCAAGAGATCCGGATTTGAACAAGATAAACAGAGAAGAGGAACTGAAACCAGGAAAAGATGTTGAGTTGAAAG TGTCAAAAGATCTGGATTTGAACACAATAAACAGAGAAGAGGAACTGAAACCAGGAAAAGATGTTGAGTTGAAAGTGTCA AAAGATCTGGATTTGAACACAATAAACAGTGCAGCGGAACTGAAGCCAGAGGAAGAATCAGAGTTAAACGTGTCAAAAGA TCTGGAGGAGTTTAACACTGTAAAGAATGTTCAGGAACTGAAGCCAGAAAAAGAAGCAGGCTTACGAGTTTCAAAGGGTA TAGAGGAGCTGAAATTAATGGAAGCTATTGAAGAGATGAAGTTAAAATTAGATGGACTTGAGGCAAAGCTAAATGAGTCT GGAATAACAATATCAAAGTTAACAGAGGAGAGGAGGCTAAACAATCAGGAGGCAAAGATCTTGCAACAAAAACTAGACGA TCTTATTAATAAAGGTCCTAGAAAAGTTCAAGTTGGATTTCCTTTTCTATATGTCTGCATGGTGGCGCTCATCTGTGTCT TCTTGGGATACCGTTTACACTCTTGA
Protein sequence (LotjaGi5g1v0217200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKAPILNIQPRELQFIFELKKQSTCSVQLTNNTYHYVAFKVKTTSPKKYSVRPNVGVLAPKSSCEFIVTMQAQRVAPED MVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPDSPDFSHTSGESKNGLDHEKVQIYSKDEIQS PEAMVKGNFVDAWDLKKVENNIVHEVKLEDDMELKPEHDTVLETINDVGMPEEETGLKVSKDEELNTVKDVEELKPQKEL ELEVSKDLDSITVKNAEELKPGKEAEFKVSRDPDLNKINREEELKPGKDVELKVSKDLDLNTINREEELKPGKDVELKVS KDLDLNTINSAAELKPEEESELNVSKDLEEFNTVKNVQELKPEKEAGLRVSKGIEELKLMEAIEEMKLKLDGLEAKLNES GITISKLTEERRLNNQEAKILQQKLDDLINKGPRKVQVGFPFLYVCMVALICVFLGYRLHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 7.2E-126 | ||
| PANTHER | 1 | 291 | 291 | 7.2E-126 | – | |
| Phobius | 1 | 437 | 437 | - | – | |
| Gene3D | 2 | 130 | 129 | 1.5E-36 | ||
| SUPERFAMILY | 2 | 135 | 134 | 5.23E-38 | ||
| ProSiteProfiles | 6 | 126 | 121 | 28.985 | ||
| Pfam | 7 | 105 | 99 | 1.9E-28 | ||
| MobiDBLite | 127 | 146 | 20 | - | – | |
| PANTHER | 329 | 461 | 133 | 7.2E-126 | – | |
| PANTHER | 329 | 461 | 133 | 7.2E-126 | ||
| Coils | 376 | 431 | 56 | - | – | |
| Phobius | 438 | 457 | 20 | - | – | |
| TMHMM | 438 | 457 | 20 | - | – | |
| Phobius | 458 | 461 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of LotjaGi5g1v0217200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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