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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0219200 |
| Transcript ID | LotjaGi5g1v0219200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G05200.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6; TrEMBL-Plants: tr|G7I803|G7I803_MEDTR Zinc finger, C3HC4 type (RING finger) protein, putative; Found in the gene: LotjaGi5g1v0219200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52554768..52557349) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTGTTTGATAAAGATATCACAAACTAAACAGGGTCATAAGATTGGCATTGTGCATAGAGCATGTGAACACAGGAAGA AATACAAATGGTTACATAGATGTTGAAAGTCCAAATTATGAGAGACGCCTAAATGAAACAATGTCATTATCACTCTACCT CCACCACCCACCATCACCACAATCGTCATCACCACTAACACCATTGTCAATCAACCGCCACCACTCATCACCACCACCGT CACTACCGGCGTCACACCGTCACCGCCACCCTTCACCACCGCTACCGCCCCCACACAATATTAATTAAGGTAACCATCTC AACCTAAAAAAAATTGAATGGAAGTTTCTCTTTGGTTAGCATGCATTATCTTGGTCCACGTGGTACACCGTCTCTGACCA ACATTTGACATGGAAGTTAATAAGGCTGCAAGAAGTTAGATAGTGGACCCCGCCAGCAGTGACTTTGTGAGTTTGCCCCT CCTACACGACACCTTCCTTTTTCCCTTCCCTTCCCATTAATCGTGTCACACAAACAACCCCAAAGCTTTCCTTTCCATTT CATTTATAAACCTCTCTCCCTCTCACCACCACCATTATTCACTCCACTCTTCAAATTCACAAAATGAACAACCACCACAA TGGAGCCACCACCACCACCCTTTGCTTCTTCCTCCTCCTTGTTCTCATCTCCCCCCTCACCAAAGCACAATCAACAAACA ACAACGAAAATGATCCCTACTACAACCGTGTGAGTCCTTCCCTGGCGATCATAATCGTCATCCTTATCGCAGCTCTCTTC CTCATGGGCTTCTTCTCTATCTACATCCGACACTGCTCCGACTCCCCCTCAGCCAGCATCCGCAACCTCACCGGCGCTGC CGGCCGTTCCCGCCGCGGCGCGCGCGGCCTCGACCCTGCCGTCATCGAAACATTCCCCACCCTGGAATACTCCGCGGTGA AGGATCACAAAATCGGAAAAGGCGCGCTAGAGTGCGCGGTTTGCCTCAACGAATTCGAGGACACCGAAACGCTGCGTTTG ATCCCCAAGTGCGACCATGTCTTCCACCCGGAGTGCATCGACGAGTGGTTATCCTCCCACTCCACCTGCCCTGTCTGCAG AGCTAATCTCACTCCTCAGCCCGGCGATTCAGTGCGCGGAGTTCCGGTTCTCGCCGCCGGCGAACCGGAAGACGTCGAGG CACAAAACGACGCTGTTCCGGATCAGCAGCAACAAACTGCAGCAGATGCTACGGCTGAACCGGATGTGAATTGCTTGAAC CAGACGCTGAGCCGGAACAGAACCAAAGGATCACGGTCTGGCCGGTCGAGGTGGTTTCCTCGATCTCACTCGACAGGTCA TTCGTTGGTTCAACCAGGTGAGGACACCGAGCGGTTCACTCTGAGGCTGCCTGTGGAGGTGAGGGAACAGTTACTGAACC AGCAATTGCATCGGGCGAGGAGCTTGATTATCTTGCCTAGAGAAACTAGCTCACGGCGGGGATATCGAACCGGTGGCGGG GAGGGGAGTAGCAGGGGGAAGTCTTCTAGGCGGTTGGACCGGGGTTTTAAATCAGACCGGTGGGTTTTCACCATGGCGCC GCCGTTCCTAGTTAGAGCGTCGTCAATTAGGTCCCCGAGGGTGGGTAATAGCGCCGGTGAAGGAACATCCGCTTCTACGC CGCCGCCACCGGTGGCGCGCCTTCCAGTTTAACCAGTCCTGCCTACCAACCCAATCTACGTCGTCATTGTATTGATTTTA TTTCAGTCCGCGATTTTGGTTTCATTCTAAGATTGTTACGATGTGTATAATGAAGCACATTAGTATTAGTAATATAGTAA ATTCTTAATCATGATAAAATGATAATCTCATAATAATCATGATTTAAACTACTATACTTTTATTTAATATTTAATTAGTA TTTTTTTGCTAACACAAAAATATTTTCACTTTTTAAATTTTTATATATTAGGACATTGAATAATTTTTGTTTATTATAAT ACAAATATCATAAAATTTAATTAAAAGGGATAAACAAAGGAACACATCATTAATATATGTCTAATAAGAAAAGGTAAGAT TCAATTTAAAGGATTACATACATGGTCCAACTTTTATTTTATTTTTTGAAATAACATACATGGTCAAACTTAATATGGAG TATTGGTTGTCACCAGTTTTGCATGCACAATGATTTGGAAAAGAGTAGCCCGGGAATGGGCATGGAAACTTCTCTTTAAA TTTGACTTGACCTCCCAATGCACTTGAATTTAGCTAGAAATTCCCTCATATTCAATTGCATATATCAAATTGTAATTCTG CGCTCCCTAATTTAATGATTCAACGGTTTCTTTTGGTGATGGTGGAAAATTTTAGGGAAAACCCCAATTTATTTGACCAT TTACAAATTAAACTTAAATAAAATACATTAGGAAAATATTAGATCTACATATGGGGAAAGTAAACACTTTTGTAATCTAT AACCGTCATAAATTGTCACTATCTATAAAGTTAAAAAAGCAAAGAAAATGAGATTGCGATGGTTTAAAACTTACGAACAT ATATTTATTTTTAAAATTTCAT
CDS sequence (LotjaGi5g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAACCACCACAATGGAGCCACCACCACCACCCTTTGCTTCTTCCTCCTCCTTGTTCTCATCTCCCCCCTCACCAA AGCACAATCAACAAACAACAACGAAAATGATCCCTACTACAACCGTGTGAGTCCTTCCCTGGCGATCATAATCGTCATCC TTATCGCAGCTCTCTTCCTCATGGGCTTCTTCTCTATCTACATCCGACACTGCTCCGACTCCCCCTCAGCCAGCATCCGC AACCTCACCGGCGCTGCCGGCCGTTCCCGCCGCGGCGCGCGCGGCCTCGACCCTGCCGTCATCGAAACATTCCCCACCCT GGAATACTCCGCGGTGAAGGATCACAAAATCGGAAAAGGCGCGCTAGAGTGCGCGGTTTGCCTCAACGAATTCGAGGACA CCGAAACGCTGCGTTTGATCCCCAAGTGCGACCATGTCTTCCACCCGGAGTGCATCGACGAGTGGTTATCCTCCCACTCC ACCTGCCCTGTCTGCAGAGCTAATCTCACTCCTCAGCCCGGCGATTCAGTGCGCGGAGTTCCGGTTCTCGCCGCCGGCGA ACCGGAAGACGTCGAGGCACAAAACGACGCTGTTCCGGATCAGCAGCAACAAACTGCAGCAGATGCTACGGCTGAACCGG ATGTGAATTGCTTGAACCAGACGCTGAGCCGGAACAGAACCAAAGGATCACGGTCTGGCCGGTCGAGGTGGTTTCCTCGA TCTCACTCGACAGGTCATTCGTTGGTTCAACCAGGTGAGGACACCGAGCGGTTCACTCTGAGGCTGCCTGTGGAGGTGAG GGAACAGTTACTGAACCAGCAATTGCATCGGGCGAGGAGCTTGATTATCTTGCCTAGAGAAACTAGCTCACGGCGGGGAT ATCGAACCGGTGGCGGGGAGGGGAGTAGCAGGGGGAAGTCTTCTAGGCGGTTGGACCGGGGTTTTAAATCAGACCGGTGG GTTTTCACCATGGCGCCGCCGTTCCTAGTTAGAGCGTCGTCAATTAGGTCCCCGAGGGTGGGTAATAGCGCCGGTGAAGG AACATCCGCTTCTACGCCGCCGCCACCGGTGGCGCGCCTTCCAGTTTAA
Protein sequence (LotjaGi5g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNHHNGATTTTLCFFLLLVLISPLTKAQSTNNNENDPYYNRVSPSLAIIIVILIAALFLMGFFSIYIRHCSDSPSASIR NLTGAAGRSRRGARGLDPAVIETFPTLEYSAVKDHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHS TCPVCRANLTPQPGDSVRGVPVLAAGEPEDVEAQNDAVPDQQQQTAADATAEPDVNCLNQTLSRNRTKGSRSGRSRWFPR SHSTGHSLVQPGEDTERFTLRLPVEVREQLLNQQLHRARSLIILPRETSSRRGYRTGGGEGSSRGKSSRRLDRGFKSDRW VFTMAPPFLVRASSIRSPRVGNSAGEGTSASTPPPPVARLPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 12 | 285 | 274 | 9.7E-128 | – | |
| PANTHER | 12 | 285 | 274 | 9.7E-128 | – | |
| Phobius | 22 | 28 | 7 | - | – | |
| Phobius | 29 | 46 | 18 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 47 | 68 | 22 | - | – | |
| Phobius | 69 | 362 | 294 | - | – | |
| Gene3D | 86 | 172 | 87 | 4.0E-21 | ||
| SUPERFAMILY | 123 | 173 | 51 | 1.32E-21 | – | |
| Pfam | 123 | 166 | 44 | 7.0E-14 | ||
| CDD | 123 | 166 | 44 | 1.40456E-20 | – | |
| SMART | 124 | 165 | 42 | 5.9E-6 | ||
| ProSiteProfiles | 124 | 166 | 43 | 13.197 | ||
| MobiDBLite | 191 | 254 | 64 | - | – | |
| MobiDBLite | 196 | 228 | 33 | - | – | |
| MobiDBLite | 236 | 250 | 15 | - | – | |
| MobiDBLite | 289 | 310 | 22 | - | – | |
| MobiDBLite | 332 | 362 | 31 | - | – | |
| MobiDBLite | 336 | 350 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0219200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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