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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0220600 |
| Transcript ID | LotjaGi5g1v0220600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-mannosidase, putative; TAIR: AT1G09010.1 glycoside hydrolase family 2 protein; Swiss-Prot: sp|Q5H7P5|EBM_LILLO Mannosylglycoprotein endo-beta-mannosidase; TrEMBL-Plants: tr|G7I838|G7I838_MEDTR Endo-beta-mannosidase-like mannosylglycoprotein; Found in the gene: LotjaGi5g1v0220600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52699638..52704817) extracted from Lotus japonicus Gifu genome v1.2.
AGTGTAATGGGCAAGATGCAAGGGAAGACAAACCTGGATTCTGGGTGGCTAGCTGCAAGGTCCACTGAGGTCCATTTCAA TGGCTCTCAGCTCACCACCACTAACCCTCCTTCTCTTACTGGCCCCACTGAACCATCACCATGGATGGAAGCTCTTGTCC CTGGAACGTAATCTCTCTGTTCTGTACTGTAATGCTTCATACATTGTATTGTACTATCTATAGTGACTGTGATTTATTAA GGGATGTTGTTTTTAATTTACTGACAGTGTTCTGGCAACCTTGGTGAAGAACAAAGTGGTGCCTGATCCTTTTTATGGAC TAGGAAATGAGGCAATCTTAGATATTGCTGATTCTGGAAGAGACTATTACACTTTCTGGTTCTTTACAACCTTTCACTGT AAACTGGTAGGTTATGAATTGTGTTCTGCTATCTCTGTTTATACCATTTTAGATTGATTCACTGCACCTGTTCCCCTCTT TCCGCTTATATGTTCCAATACAAAATTGCCCTTTTTATTGCCAAATTTTGCTGTCTGTTTAATTTGAGTTAAGCCAAATT GAAATGTGATACTTTGAAGTGAGTTTATGGACTTGGTTTTTAAGTTCAACCCAGATAGAGATGTGATTTTCCTTGTTTGG TGATTCTAGACATTGCTAATTACTGGATCCTTTGCAGGCAGGCAATCAGCACTGTGATCTGAACTTCCGTGGAATCAATT ACTCAGCCGATGTTTACTTAAACGGGCACAAAATGGTCCTCCCGAAAGGAATGTTTCGGAGGCATTCTCTTGATGTCACT AGTATTCTTCATCCTGATGGCAATAACCTGCTCGCGGTTCTTGTTCATCCTCCTGATCATCCTGGGAGTATCCCACCTCA GGGAGGACAGGGGGGCGATCATGAGGTCAGGAATTAAATAAATAAAGCCTATCTTCTAACTGTGTCCTTCTCTATTATCT AACTTCCTGTTATAAGAAAGCATCAAATATCAACTTAAGTGATTGGTGACTTTTGAAATCTGTTTAGTTTTGGGGAGAGT GGAAGAGATGATGCTTAAGAATATATATATAAGTCATTTATTTTTTGTTTTTCCTTTTGTGTAGATAGGAAAGGATGTGG CTACACAATATGTTCAAGGTTGGGACTGGATAGCTCCTATAAGGTGACATTGCTATTACCTGTGTGGTAAATAATTTTCT TTTTCCTTGAATTGAAAACCTACCATTCTTTATTGGTTAGCCACTGCTAGGTCATAGATCCTTGTATGGTAACAAGCTGG AAATCTCACCATTATTATAATATTGCTTTGTCAACATGAGAAAATTTTACTGTCATTCATTTTCACTCACAATGAATGTT GTTGCAAAAGAGGACATATTGCTTACATTGAACGGGAAAAAAAGGCATCAAATGAGTAGATGCATACATTAGTATATATC ATCTCACACTGAAATTTCTTTAGGACATGTTCCTTAATGACTTTATGATGTTCTCATAAGCACATGAAAAGGAAAGGAAA ACGGAACTAATTTTAGGGAATTTTGGAATTGCTTATTGACTGCCTATAGAGTTTTGATCAGTTTCTGAGCTATGAAGAAG CAATATAATGCAAACTGTATTAGCAACTAATAACTAATGCAAGTATTAAATTTGATTGCAGGGATAGGAATACTGGAATT TGGGATGAGGTTTCCATTTTTATTACCGGGGTGAGTTGAATAAAATGCTTTAGTTCCTTCCAATGTCTATGGTTTATAAC CCAAACACCTAAGAATTGAGACCAATTGCAAATCCTTTTCTTTCTCTTTGCAATGCACTGTCTTTTCTCTTTACCCCAAA ACAAGAGTTTAGCTTTTCGTCTATTCTTATCTAGTTCATAATTAAATATTGCTGAATTTCTCTGGATCTGACCATGATGA GAAATAATGTGGGAAATCACTGGGATGTCTGGAAAACAAAACCAGAATATTGTAGAGACATGGGCTAAACATCGAAATTG CTTTGTTAATTTTGCTTTTCATGCATTTCAAAAATTGAGGAAGCATGTCATAGATATGATTTTTTTAAATTTAATGGTGT TTCCAGCAGTTCGTTGATAGGATGATTCTGTTGTCTGTGTTTGCTGCAGCCAGTGAAAATAATTGATCCCCACTTGGTGT CATCATTTTTTGACAATTACAAGAGAGCATATCTACATGCCACAACAGAGTTAGAGAACAGGAGCTCCTCGACTGCTGAA TGCTCTTTGAGTATCCATGTCACAGCAGAACTTGAGGGAAGCATTCACCTAGTAGAGCAGCTTCAAACTCAAAATATTTC AGTTCCTGCAGGATCACGGGTGCAATATACATTTCCTGAGGTCTGGGGAAAACTTGTCTGTGTGACTTATGTCACATTTT AATTTTTTCCAGAATTTACAAAGCCTGCGATCCTGTATTGATAATTTTTTGTATCCTTGTTTTACTTGATCCTGTTAATT TGCATAATAAAGTAATAATGGGATGATTGGCAGCTCTTCTTCTACAAGCCCAATTTATGGTGGCCTAATGGAATGGGGAA GCAATCTTTGTACAATGTTGTTATTGACATTGACGTTAAAGGATTCGGTGAGTCTGATTCGTGGAGCCATTACTTTGGAT TCCGCAAAATTGAGAGCCACATTGATGGTGCTACTGGTGGAAGGTATGGTGGTTGTAATGTTTCTTCAATGTTGTAATAT TTTACTTTTCCTTGTTAAAAATAATTCAAGCTTTAAACTGTTTTTGTATATGTTCTTCTGCATGTATTTTATTTCATAGG TTGTTCAAAGTCAATGGAGAACCAATTTTCATACGCGGGGGTAACTGGATATTGTCTGATGGACTACTGCGACTGTCAAA GAAGCGATATAGTACAGATATCAAGTTTCATGCAGATATGAATTTTAACATGATTCGGTGCTGGGGCGGTGGACTGGCTG AAAGGCCAGAGTTTTATCATTATTGTGACTATTATGGTCTTCTGGTAAGTTGTAATGCACCCTTATTCTTGCTTACATGT GCAGCTTAATATGCTTATATGTGACTATTACTGCACCCTATGTCTTAGACTCTGATACTTATAAGTTGCATTTGTGGCAG TTTTGGTTTATAATTGATCGTGTTGCTGTCTTAAATCTCGTAGGTATGGCAAGAGTTCTGGATTACTGGGGATGTTGATG GACGTGGTGTCCCAGTATCAAATCCGAACGGTCCACTGGACCATGACCTTTTCTTGTTTTGTGCCAGAGACACAGTCAAG CTTCTTAGAAATCATCCCAGTCTTGCCCTCTGGGTTGGTGGAAATGAACAAGTTCCACCACGTGATATAAATGCTGCTCT GAAGAATGATCTAGAACTCCATCCTTATTTTGAACATGTAAATGAAAAGAGAAAACCTTTAGGTGATTTGGAAGATCCTA GTCAGTATCTCGATGGTACACGTATGTACATAAAAGGATCATTATGGGATGGATTTGCAGATGGGAAGGGAGATTTCACT GATGGACCTTACGAGATTCAAAACCCTGAGGATTTCTTCAAGGATGATTTTTATAAATATGGATTCAACCCAGAGGTTGG TTCTGTTGGAATGCCGGTTGCCGCTACCATAAGAGCAACAATGCCTTCAGAAGGATGGCAGATACCATTGTTCAAGAAAC TTCCCAATGGTTATGTAGAGGAAGTTCCAAATCCCATATGGAAATACCATAAATACATTCCATATTCAAAACCAACCAAG GTTCATGATCAGATTCAGCTTTATGGTGCTGCAAAAGATCTTGATGACTTTTGTTTGAAGGTAAGAGAAAACTTAATCCA TATGGCCGTTCGTGATGCATTTTTAATCCCCGTACCTCTTTTTGTTCTGTTGTTGATATTTATGTAATATTCTTAGGCTC AACTTGTTAACTACATACAATATAGAGCTCTTTTAGAAGGATGGAGTTCTCGCATGTGGAGCAAATATACAGGTGTATTG ATTTGGAAGACGCAAAATCCTTGGACTGGTCTGAGAGGTCAATTTTATGATCATCTACTTGACCAAACAGCCGGTTTCTA TGGCTGTCGATGTGCTGCCGAGCCAATTCATGTACAGCTTAACCTCGCTACATATTGTATAGAGGTAAGTACCTAACCCG TTTGGAAGAGCTTATTTGAGCTTATCTTACAACCTAAATGCTTATGCAAGTGTTTGAGAGAGCACTTATGTAAACAACTT AAGCGCTTATGGTACATAAGCTCTCCTACACACTTGCATAAGCTTATGTTTGGGAGAGCTTATGTATAATTTAATGATCT AGTTATGAATAGCTTCTTACAGGTTTTGTATATCATTTTTTTATTTCTCAAAACAGGTTGTGAATACAACATCAGAAGAG TTGTCTAATGTAGCTATTGAAGCCTCAGTGTGGGATCTGGAAGGAACATGTCCATACTACAAAACTCATGAAAATCTCTC TTTGCTGCCAAAAAAAGTAACATCTATTGTTGAGATGAAGTATCCAAAGTCGAAAAATCCTAAGCCAGTCTATTTTCTTC TTCTCAAACTCTACGACATGTCAGATTTTAGAATCTTATCAAGAAACTTCTATTGGTTGCATCTCCCTGGTGGAGATTAC AAGCTATTGGAGCCGTATAGGAAGAAGAAAATACCTCTTAAGATAACATCGGAGGTTTTTATTGAAGGATCCACTTATAA ACTCCAAATGCATGTGCTGAACTCATCGAAAAGACCAGATACGAAGAGTTTAGTACTTGAGTGCGGTTCAACTGCTAAAC AACGCGACAGTTGCATTGTTACAGACTCAGTGGATAACATGCATAATGAGGCTGGAAAAGATCAAGAAGTTGGTTGGTTT AAGAGGATACACAGATGCTTAGCTGGGAAAAGTGATGGCTTGAAGGTTTCTGAAATAAATGGACAAGATATAGGAGTTGC TTTCTTTCTTCATTTTTCTGTTCATGCTTCAAATAGGGACCACAAGGAAGGGGAAGACACAAGAATTCTCCCTGTTCACT ACTCAGATAACTATTTTTCACTGGTGCCCGGAGAGGCCATGACTGTTAAAATCTCTTTCGAGGTCCCTCCAGGTGTCGCT CCTCGAGTTACCCTTCATGGCTGGAATTACCATGGAAAAGCCATCCATGAAGCTCTTTAG
CDS sequence (LotjaGi5g1v0220600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAAGATGCAAGGGAAGACAAACCTGGATTCTGGGTGGCTAGCTGCAAGGTCCACTGAGGTCCATTTCAATGGCTC TCAGCTCACCACCACTAACCCTCCTTCTCTTACTGGCCCCACTGAACCATCACCATGGATGGAAGCTCTTGTCCCTGGAA CTGTTCTGGCAACCTTGGTGAAGAACAAAGTGGTGCCTGATCCTTTTTATGGACTAGGAAATGAGGCAATCTTAGATATT GCTGATTCTGGAAGAGACTATTACACTTTCTGGTTCTTTACAACCTTTCACTGTAAACTGGCAGGCAATCAGCACTGTGA TCTGAACTTCCGTGGAATCAATTACTCAGCCGATGTTTACTTAAACGGGCACAAAATGGTCCTCCCGAAAGGAATGTTTC GGAGGCATTCTCTTGATGTCACTAGTATTCTTCATCCTGATGGCAATAACCTGCTCGCGGTTCTTGTTCATCCTCCTGAT CATCCTGGGAGTATCCCACCTCAGGGAGGACAGGGGGGCGATCATGAGATAGGAAAGGATGTGGCTACACAATATGTTCA AGGTTGGGACTGGATAGCTCCTATAAGGGATAGGAATACTGGAATTTGGGATGAGGTTTCCATTTTTATTACCGGGCCAG TGAAAATAATTGATCCCCACTTGGTGTCATCATTTTTTGACAATTACAAGAGAGCATATCTACATGCCACAACAGAGTTA GAGAACAGGAGCTCCTCGACTGCTGAATGCTCTTTGAGTATCCATGTCACAGCAGAACTTGAGGGAAGCATTCACCTAGT AGAGCAGCTTCAAACTCAAAATATTTCAGTTCCTGCAGGATCACGGGTGCAATATACATTTCCTGAGCTCTTCTTCTACA AGCCCAATTTATGGTGGCCTAATGGAATGGGGAAGCAATCTTTGTACAATGTTGTTATTGACATTGACGTTAAAGGATTC GGTGAGTCTGATTCGTGGAGCCATTACTTTGGATTCCGCAAAATTGAGAGCCACATTGATGGTGCTACTGGTGGAAGGTT GTTCAAAGTCAATGGAGAACCAATTTTCATACGCGGGGGTAACTGGATATTGTCTGATGGACTACTGCGACTGTCAAAGA AGCGATATAGTACAGATATCAAGTTTCATGCAGATATGAATTTTAACATGATTCGGTGCTGGGGCGGTGGACTGGCTGAA AGGCCAGAGTTTTATCATTATTGTGACTATTATGGTCTTCTGGTATGGCAAGAGTTCTGGATTACTGGGGATGTTGATGG ACGTGGTGTCCCAGTATCAAATCCGAACGGTCCACTGGACCATGACCTTTTCTTGTTTTGTGCCAGAGACACAGTCAAGC TTCTTAGAAATCATCCCAGTCTTGCCCTCTGGGTTGGTGGAAATGAACAAGTTCCACCACGTGATATAAATGCTGCTCTG AAGAATGATCTAGAACTCCATCCTTATTTTGAACATGTAAATGAAAAGAGAAAACCTTTAGGTGATTTGGAAGATCCTAG TCAGTATCTCGATGGTACACGTATGTACATAAAAGGATCATTATGGGATGGATTTGCAGATGGGAAGGGAGATTTCACTG ATGGACCTTACGAGATTCAAAACCCTGAGGATTTCTTCAAGGATGATTTTTATAAATATGGATTCAACCCAGAGGTTGGT TCTGTTGGAATGCCGGTTGCCGCTACCATAAGAGCAACAATGCCTTCAGAAGGATGGCAGATACCATTGTTCAAGAAACT TCCCAATGGTTATGTAGAGGAAGTTCCAAATCCCATATGGAAATACCATAAATACATTCCATATTCAAAACCAACCAAGG TTCATGATCAGATTCAGCTTTATGGTGCTGCAAAAGATCTTGATGACTTTTGTTTGAAGGCTCAACTTGTTAACTACATA CAATATAGAGCTCTTTTAGAAGGATGGAGTTCTCGCATGTGGAGCAAATATACAGGTGTATTGATTTGGAAGACGCAAAA TCCTTGGACTGGTCTGAGAGGTCAATTTTATGATCATCTACTTGACCAAACAGCCGGTTTCTATGGCTGTCGATGTGCTG CCGAGCCAATTCATGTACAGCTTAACCTCGCTACATATTGTATAGAGGTTGTGAATACAACATCAGAAGAGTTGTCTAAT GTAGCTATTGAAGCCTCAGTGTGGGATCTGGAAGGAACATGTCCATACTACAAAACTCATGAAAATCTCTCTTTGCTGCC AAAAAAAGTAACATCTATTGTTGAGATGAAGTATCCAAAGTCGAAAAATCCTAAGCCAGTCTATTTTCTTCTTCTCAAAC TCTACGACATGTCAGATTTTAGAATCTTATCAAGAAACTTCTATTGGTTGCATCTCCCTGGTGGAGATTACAAGCTATTG GAGCCGTATAGGAAGAAGAAAATACCTCTTAAGATAACATCGGAGGTTTTTATTGAAGGATCCACTTATAAACTCCAAAT GCATGTGCTGAACTCATCGAAAAGACCAGATACGAAGAGTTTAGTACTTGAGTGCGGTTCAACTGCTAAACAACGGAAAA GATCAAGAAGTTGGTTGGTTTAA
Protein sequence (LotjaGi5g1v0220600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKMQGKTNLDSGWLAARSTEVHFNGSQLTTTNPPSLTGPTEPSPWMEALVPGTVLATLVKNKVVPDPFYGLGNEAILDI ADSGRDYYTFWFFTTFHCKLAGNQHCDLNFRGINYSADVYLNGHKMVLPKGMFRRHSLDVTSILHPDGNNLLAVLVHPPD HPGSIPPQGGQGGDHEIGKDVATQYVQGWDWIAPIRDRNTGIWDEVSIFITGPVKIIDPHLVSSFFDNYKRAYLHATTEL ENRSSSTAECSLSIHVTAELEGSIHLVEQLQTQNISVPAGSRVQYTFPELFFYKPNLWWPNGMGKQSLYNVVIDIDVKGF GESDSWSHYFGFRKIESHIDGATGGRLFKVNGEPIFIRGGNWILSDGLLRLSKKRYSTDIKFHADMNFNMIRCWGGGLAE RPEFYHYCDYYGLLVWQEFWITGDVDGRGVPVSNPNGPLDHDLFLFCARDTVKLLRNHPSLALWVGGNEQVPPRDINAAL KNDLELHPYFEHVNEKRKPLGDLEDPSQYLDGTRMYIKGSLWDGFADGKGDFTDGPYEIQNPEDFFKDDFYKYGFNPEVG SVGMPVAATIRATMPSEGWQIPLFKKLPNGYVEEVPNPIWKYHKYIPYSKPTKVHDQIQLYGAAKDLDDFCLKAQLVNYI QYRALLEGWSSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLATYCIEVVNTTSEELSN VAIEASVWDLEGTCPYYKTHENLSLLPKKVTSIVEMKYPKSKNPKPVYFLLLKLYDMSDFRILSRNFYWLHLPGGDYKLL EPYRKKKIPLKITSEVFIEGSTYKLQMHVLNSSKRPDTKSLVLECGSTAKQRKRSRSWLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 854 | 851 | 0.0 | – | |
| PANTHER | 4 | 854 | 851 | 0.0 | ||
| SUPERFAMILY | 5 | 211 | 207 | 6.8E-37 | ||
| Gene3D | 18 | 209 | 192 | 1.2E-36 | ||
| Gene3D | 213 | 333 | 121 | 2.1E-20 | ||
| SUPERFAMILY | 213 | 333 | 121 | 9.35E-21 | ||
| Pfam | 214 | 333 | 120 | 1.9E-12 | ||
| SUPERFAMILY | 330 | 696 | 367 | 4.37E-68 | ||
| Gene3D | 338 | 695 | 358 | 2.4E-74 | – | |
| Pfam | 347 | 478 | 132 | 4.1E-5 | ||
| ProSitePatterns | 455 | 469 | 15 | - | ||
| SUPERFAMILY | 696 | 799 | 104 | 1.29E-24 | ||
| Gene3D | 696 | 795 | 100 | 3.0E-20 | ||
| SUPERFAMILY | 783 | 834 | 52 | 7.19E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Mannosylglycoprotein endo-beta-mannosidase activity | Catalysis of the hydrolysis of the alpha-D-mannosyl-(1->6)-beta-D-mannosyl-(1->4)-beta-D-N-acetylglucosaminyl-(1->4)-beta-D-N-acetylglucosaminyl sequence of glycoprotein to alpha-D-mannosyl-(1->6)-D-mannose and beta-D-N-acetylglucosaminyl-(1->4)-beta-D-N-acetylglucosaminyl sequences. |
Expression pattern of LotjaGi5g1v0220600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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