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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0221000 |
| Transcript ID | LotjaGi5g1v0221000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein LysM; TAIR: AT1G55000.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q9FZ32|FB60_ARATH F-box protein At1g55000; TrEMBL-Plants: tr|A0A059PC02|A0A059PC02_CICAR F-box protein LysM; Found in the gene: LotjaGi5g1v0221000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52730900..52733590) extracted from Lotus japonicus Gifu genome v1.2.
TGACGGTGTAAAAAAACTTTACACCGTCGGTGCATCAAAATTAAACTCATAAAAAAAACTTAATTTCTCACATTAAATCA TGATAATGATAATTCGAAAATATCTTTATTATCCTTTCATTTAAGATCAATGGAGGTTGGGTGGTTGGCGTGGCGGGCGG GTAAAAGTAGTGAATTGTGACCATCTTATCCCTCCGCTCCGGTTATGGGCTGTTGTTGCGACGAAGACGACGGCGACATT CTCCGCCACCTCATGAGTTCCCCTTCCTCCGCCCAAACCCCACCACCACCTCCTCCTCCTCCTTCCACCGTGATCTCACC GATGAATTCTCATTTCTCCGCACTATCCTCCACCGACATCCTCCGCCTCATCTTCCAGAAGCTTCCCGTCCCGGATCTCG CCCGTGCCACCTGCGTCTCCCGACTCTGGAACTCCGTCGCCTCCCAGAGGGACATGGTAACCAGAGCTTTCCTCGCCCCC TGGAAATTGAACAACGCCATCGGAGACCCACTCTCCAAAAGCTTCTGGAGAGACAACTCTCTCGCTAAATTCGCCGCCTC TCATCGGGTTGTGCGCGGCGACAGCGTCGCCAGTCTTGCCGTCAAGTACTCCGTTCAGGTAGGGTTTTGACTCTCACCTT AAACAGTGAAATTCTCAATTGAATTGCTGATTTCCTTGATGTTCACTTATTGTTTGAAAATTTAGAAATACCCAGTTTAG TTGAGTTTAGCATGTTTTTACAAATTTGATTCTTGAGTGAATAGTGATGGTTTAGGGTTTGTACCTATTGAATCTAACCT TTTACAACAAGATGCAGTAGCAATGCTTGACTTTGCAGAAAGTTGTGGATAATAGGCTTGATGTGGTTGCAAAACTATGA TGTTGTGGCCGTAATTGTGATCAGGCCAGACTTGTTAATAGCGCGCCATAGTGGCGCAATTACGTAGCGCCCTGGGGGTT CACCGTTATTTGCCGCTATTGTCCGCTATTTGCGGCTATAGCGCTCGGAAAGCGTTTTTGGGCTTGCCGCTACGCTACGC TATCCGCCATTAACAACCCTGGATCAGGCACATGGATTTAAAATCTTGGTTTACAAATGAAATTGTTAAAATATACTTAT TTGATATGATTTCACATTTTCCTCTCCAAGCTTTCATTTTAAAGAAGTTAATTACTCTTTTGATGTGATTTTGCGGCTAT CTTTTCCTTTTTCTGTTCATGGTTTTTTCAATTTGATGAACTGTGTGGAACTTTGGATAATGTTTTCGTGTTTTGGGCAG GTGATGGACATAAAGCGCCTGAACAACATGATGAGTGACCATGGGATATACTCAAGGGAGAGGTTGTTGATTCCTATCAG CAATCCTGATATTCTTGTTAACAGGACATGCTTTATTGAGCTGGATGTTTTTGCTAAACGTGAAGTAGCGGTGTTGTACC CCAATGATGAACCGGACAGAAAGAGGACTACCTATGTTGCAAACAGGATATCCTCAGAAGAAAGCAACAAAAAGGTGCTT CATTCCTTGAAGAGGAGCATGCAAGTTGACAGTGAAACTGCTCAATACTACTGGTCTGTTTCAAATGGCGATCCCCGAGC TGCCCTTGCTGAATTCTCAGCAGATCTTCAGTGGGATAGGCAAGTTGGGCATTCCTAGTCTCTGGAACGGTTCAAGTCTA GTTTGGAATAATTAGGAGGTTTGGTGGCTGGCAATGGAAAGTGGATGATAAATAATTAAGAGGTTGGGTGGCAGGCAAAT GTTTGCTTAGATAGGTTACCTCTCAATACATTTTCATATGATTGAATACTGCTCGACTATCATGTTTGCTCTTCTCCATG GGAGAAATGAGACCATAGTAAGTCACTTCTTGCCCTGTGATCGATTTCTTTCAGCTACTCATATGATGTGTGTACGAATT TGGGTGACTTGTATTTTATTTGTAGTAATTACTATACATATAAAAGAAGATGTACTTAACAAAAACAAATTGTTGTATTA TTTTTCAAATTGTAATTGAAGTTGCTGCCTGCTAGGCATCTTGTGCTTAGTAAGATTATGCAGAAATGTGTTCACCACTA AGGATGAGAATTCATGCCAAGAATAAAGTGGTAAAAACAAGGATGGTAGTATACATTATCACATCTTTTGCTGTGTTGGT TTTGGTTCTTTTTTTACCCCCATGTGTTATCTAAAATGGTAGCTGAAAAGCATGAGATTTGGGTAGAATTTGAGCTTTTG AGAGGCTTAATAAGTAAGATTATCCAGTAACTTCATAGATAAGGATGTCTGGCGAATCAGAATCTATCTGTGAAACGAAT ATTTGTTATTCTATTTTCATCTTGTCTTTTTTGGAATAGGAAGAATGACTTGCTTTTTATAAGTACTACCGCTTTTGATG TCATTCTCGAGTACCTTTAAATTGATATTGGTCCAATAGCTAAAAGATGGTTTGATTGATTTCAAGTCTCAAGACAAAGC CACATACCGTTCTAAAGTTGGGAGAAGAACAATTCATGCCATTGATTTGCACTTTTTAACAGTTGAGGATAAAGGAGTAC AATACTTCTCAGTTTTGGACTTTAGGTTTGTTGAAGAGCATGATGAAATATGATACATCATACATGACTACAAACCTTAT TAAGTTACAAGTAGTATAATGGACATTATCTTGGTGGTGTAAGAAGAAAGC
CDS sequence (LotjaGi5g1v0221000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTGTTGTTGCGACGAAGACGACGGCGACATTCTCCGCCACCTCATGAGTTCCCCTTCCTCCGCCCAAACCCCACC ACCACCTCCTCCTCCTCCTTCCACCGTGATCTCACCGATGAATTCTCATTTCTCCGCACTATCCTCCACCGACATCCTCC GCCTCATCTTCCAGAAGCTTCCCGTCCCGGATCTCGCCCGTGCCACCTGCGTCTCCCGACTCTGGAACTCCGTCGCCTCC CAGAGGGACATGGTAACCAGAGCTTTCCTCGCCCCCTGGAAATTGAACAACGCCATCGGAGACCCACTCTCCAAAAGCTT CTGGAGAGACAACTCTCTCGCTAAATTCGCCGCCTCTCATCGGGTTGTGCGCGGCGACAGCGTCGCCAGTCTTGCCGTCA AGTACTCCGTTCAGGTGATGGACATAAAGCGCCTGAACAACATGATGAGTGACCATGGGATATACTCAAGGGAGAGGTTG TTGATTCCTATCAGCAATCCTGATATTCTTGTTAACAGGACATGCTTTATTGAGCTGGATGTTTTTGCTAAACGTGAAGT AGCGGTGTTGTACCCCAATGATGAACCGGACAGAAAGAGGACTACCTATGTTGCAAACAGGATATCCTCAGAAGAAAGCA ACAAAAAGGTGCTTCATTCCTTGAAGAGGAGCATGCAAGTTGACAGTGAAACTGCTCAATACTACTGGTCTGTTTCAAAT GGCGATCCCCGAGCTGCCCTTGCTGAATTCTCAGCAGATCTTCAGTGGGATAGGCAAGTTGGGCATTCCTAG
Protein sequence (LotjaGi5g1v0221000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCCCDEDDGDILRHLMSSPSSAQTPPPPPPPPSTVISPMNSHFSALSSTDILRLIFQKLPVPDLARATCVSRLWNSVAS QRDMVTRAFLAPWKLNNAIGDPLSKSFWRDNSLAKFAASHRVVRGDSVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERL LIPISNPDILVNRTCFIELDVFAKREVAVLYPNDEPDRKRTTYVANRISSEESNKKVLHSLKRSMQVDSETAQYYWSVSN GDPRAALAEFSADLQWDRQVGHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 261 | 233 | 2.0E-70 | – | |
| PANTHER | 29 | 261 | 233 | 2.0E-70 | – | |
| Gene3D | 47 | 84 | 38 | 1.9E-7 | – | |
| SUPERFAMILY | 50 | 96 | 47 | 7.19E-9 | ||
| Pfam | 51 | 80 | 30 | 8.2E-6 | ||
| Gene3D | 111 | 168 | 58 | 4.3E-11 | ||
| ProSiteProfiles | 118 | 162 | 45 | 11.963 | ||
| CDD | 119 | 162 | 44 | 3.95133E-8 | ||
| SUPERFAMILY | 119 | 163 | 45 | 8.63E-7 | – | |
| SMART | 119 | 163 | 45 | 5.3E-5 | ||
| Pfam | 120 | 163 | 44 | 1.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0221000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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