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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0223100 |
| Transcript ID | LotjaGi5g1v0223100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c biogenesis protein CcsA; TAIR: ATCG01040.1 Cytochrome C assembly protein (ChrC); Swiss-Prot: sp|Q9BBP4|CCSA_LOTJA Cytochrome c biogenesis protein CcsA; TrEMBL-Plants: tr|A0A0K0LNH5|A0A0K0LNH5_WISFL Cytochrome c biogenesis protein CcsA; Found in the gene: LotjaGi5g1v0223100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52992409..52993380) extracted from Lotus japonicus Gifu genome v1.2.
ATGATATTTTCAACTTTAGAGCATATATTAACTCATATATCGTTTTCGGTCGTATCAATTGTAATTTCAATTCATTTGAT AACCTTATTTGTCAACCAAATTGTAGGATTCTATGATTCGTCCAAAAAAGGCATGATAATAACTTTTTTGTGTATAACAG GATTATTAATTACTCGTTGGTTTTTTTCAGGCCATTTACCATTTAGTGATTTATATGAATCCTTAATCTTTCTTTCATGG GGTTTTTCGATTTTTTATATGGTTCCGCGTTTTAAAAAACAAAAAAACGATTTAAGTACAATAATTGCACCTAGTGTTAT TTTTACCCAAGGCTTTGCTACTTCGGGTCTTTTAACCGAAATGCATCAATCTGGAATATTAGTACCCGCTTTACAATCCC ATTGGTTAATGATGCACGTAAGTATGATGATCTTAGGCTATGCAGCTCTTTTATGTGGATCACTATTATCAGTAGCTATT TTAGTCATTACATTTCAAGAATTAATACCAATTTTGGGTAAAAGCAAAAGATTGAGTTTTTTATATGAATCATTTGATTA TGCTGAAATCAAATACATAAATATGAATGAAAGAAACAATGTTTTACGAAAAACTTCTTTTTCATCTTATAGAAATTATT ACAGGTATCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTAGGTTTTATCTTTTTAACGATCGGT ATTCTTTCAGGAGCAGTATGGGCTAACGAGGCATGGGGATCTTATTGGAATTGGGATCCCAAGGAAACTTGGGCCTTTAT TACTTGGACAATATTCGCGATTTATTTACATAGTAGAAAAAATAAAAAACTGGAAGGTTTAAATTCTTCAATAGTGGCCT CTATAGGCTTTCTTATAATTTGGATATGTTATTTTGGGGTCAATCTATTAGGAATAGGACTACATAATTATGGTTCGTTT ACATCTAATTGA
CDS sequence (LotjaGi5g1v0223100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATTTTCAACTTTAGAGCATATATTAACTCATATATCGTTTTCGGTCGTATCAATTGTAATTTCAATTCATTTGAT AACCTTATTTGTCAACCAAATTGTAGGATTCTATGATTCGTCCAAAAAAGGCATGATAATAACTTTTTTGTGTATAACAG GATTATTAATTACTCGTTGGTTTTTTTCAGGCCATTTACCATTTAGTGATTTATATGAATCCTTAATCTTTCTTTCATGG GGTTTTTCGATTTTTTATATGGTTCCGCGTTTTAAAAAACAAAAAAACGATTTAAGTACAATAATTGCACCTAGTGTTAT TTTTACCCAAGGCTTTGCTACTTCGGGTCTTTTAACCGAAATGCATCAATCTGGAATATTAGTACCCGCTTTACAATCCC ATTGGTTAATGATGCACGTAAGTATGATGATCTTAGGCTATGCAGCTCTTTTATGTGGATCACTATTATCAGTAGCTATT TTAGTCATTACATTTCAAGAATTAATACCAATTTTGGGTAAAAGCAAAAGATTGAGTTTTTTATATGAATCATTTGATTA TGCTGAAATCAAATACATAAATATGAATGAAAGAAACAATGTTTTACGAAAAACTTCTTTTTCATCTTATAGAAATTATT ACAGGTATCAATTTATTCAACAATTGGATCGTTGGGGTTATCGTATTATTAGTCTAGGTTTTATCTTTTTAACGATCGGT ATTCTTTCAGGAGCAGTATGGGCTAACGAGGCATGGGGATCTTATTGGAATTGGGATCCCAAGGAAACTTGGGCCTTTAT TACTTGGACAATATTCGCGATTTATTTACATAGTAGAAAAAATAAAAAACTGGAAGGTTTAAATTCTTCAATAGTGGCCT CTATAGGCTTTCTTATAATTTGGATATGTTATTTTGGGGTCAATCTATTAGGAATAGGACTACATAATTATGGTTCGTTT ACATCTAATTGA
Protein sequence (LotjaGi5g1v0223100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFSTLEHILTHISFSVVSIVISIHLITLFVNQIVGFYDSSKKGMIITFLCITGLLITRWFFSGHLPFSDLYESLIFLSW GFSIFYMVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQSGILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAI LVITFQELIPILGKSKRLSFLYESFDYAEIKYINMNERNNVLRKTSFSSYRNYYRYQFIQQLDRWGYRIISLGFIFLTIG ILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNSSIVASIGFLIIWICYFGVNLLGIGLHNYGSF TSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 321 | 321 | 27.223 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 8 | 321 | 314 | 1.1E-98 | – | |
| PANTHER | 8 | 321 | 314 | 1.1E-98 | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 33 | 43 | 11 | - | – | |
| TMHMM | 44 | 61 | 18 | - | – | |
| Phobius | 44 | 62 | 19 | - | – | |
| TIGRFAM | 45 | 318 | 274 | 1.9E-96 | ||
| Phobius | 63 | 73 | 11 | - | – | |
| Pfam | 69 | 315 | 247 | 1.9E-71 | ||
| TMHMM | 71 | 88 | 18 | - | – | |
| Phobius | 74 | 91 | 18 | - | – | |
| Phobius | 92 | 97 | 6 | - | – | |
| Phobius | 98 | 118 | 21 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 119 | 137 | 19 | - | – | |
| Phobius | 138 | 165 | 28 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 166 | 224 | 59 | - | – | |
| TMHMM | 225 | 247 | 23 | - | – | |
| Phobius | 225 | 248 | 24 | - | – | |
| Phobius | 249 | 262 | 14 | - | – | |
| TMHMM | 262 | 279 | 18 | - | – | |
| Phobius | 263 | 278 | 16 | - | – | |
| Phobius | 279 | 289 | 11 | - | – | |
| Phobius | 290 | 314 | 25 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 315 | 323 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cytochrome complex assembly | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi5g1v0223100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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