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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0227500 |
| Transcript ID | LotjaGi5g1v0227500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Single-stranded DNA-binding protein; TAIR: AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein; Swiss-Prot: sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial; TrEMBL-Plants: tr|I3SK50|I3SK50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0227500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53482601..53485664) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGAAAAAAAAGAGATTTCAACTTTGCACCTTAAAGTCTTAAACCCTCGCAGTTGTTACTGTTTGTGTTTGCAGGAA GGAAACTGGAAATGAATTCCATTGCAGTAAGAGTTGCGAAGCATCTTCGAATCACTTCCAACGTTGGTGTTGGTGTGTAT TTTTCTATTCAGTTTTCTTCAGACACTGTGTTTGGTTCAATTAATGTAAGTTTGATGCTTCAGTTGTTGTTGTTATTATT AACTGTGATTTCGTTTTTTGCTGAATTCTTCATCAGCTGGTGGTGGTGTGTGGCGGAGACACGGGCCGGCGGCGTCATGG TACTCAACATTTCTGTCTGAAGGTGAGGGTGATCAGCCTTCGCGTGGTAATGGTGGACTTAACAATGAGGAGTTGGATGA AGAAATTGATGATTTTCTTGGTGGCAAGCCTGAACTTCAGCTGCAAGGTGTCGATCCCAAAAGGGGTTGGGGATTTCGCG GTGTGCACAAGGTAAAAAAATTCATTTCTTATTATCAAAGCTAGTAATTTTACATGCTTGAATGAATACAATTGATTCTG GACAATGGTTGTAGAATAAGAAAGGTTTATGTAAGGAGAAGCCAACTAATGTTAACGCTGAAATGAACTGAGGAGTTTGT TAGTGCTGTTAGAAGGATTTTCAGGCTGTTAGTATTTTTTTATAAGCAAATGTTGTATGTTAGTAATGTTAGTAAATTAG TCCCTCAGGTTCGGACCCTAGACCCTTTCACCCTTTATCCCACCCATGACCCAACCCTTATGTCCCCTTGCTCTTACCAC TTGAGCTAACCATCGGGGATTTCAGGCTGTTAGTATGATTAGTTAGAAATCTGTTTGAGTGTAAAAGGGACTGTAGGCTA TATTAGAGTAAGTGTCTTTAGATAGTTATTCTCTGATTGTTAGAAGGTACCAAGACCTCTGAAATTGTTCTGGAGAATTT TTACTTCATCTCAGGCTGCGTCCACACTGGAACAGCACCGAGATACTCTTCTCTCAATTTCTGAACTAGTTGTATCACAA CCTAAAATGACAACTAATCATATCTTTGCTTTTTGCACCTCACAAATGATTTGACCAACAATAGGAATTTGAATCAGGCA ATTATTTGTGGAAAAGTTGGCCAAGCCCCTGTACAAAAGATATTGAGGAATGGGAAGAATGTGACCATCTTTACAGTTGG GACAGGGGGGATGTCTGACCAGAGAATTGTAGGAGCAAGGGATATGCCAAAACCTCCTCAATGGCATCGCATTGCCGTGC ATAACGATGTGCTGGGGGCCTATGCAGTGCAACAAATTTGTAAAAAGTAAGGGTTCATACAAGAGGATATTTGTTTTTTG TTGTGAATATTCCAGTCTCATTGCTTGAAGCTTTAATGCAGCTCTTCAGTTTATGTTGAGGGTGACATTGAGACTCGAGT TTATAACGATAGCATTAATGGTGAAGTTAAAAGCATTCCCGAGATATGTGTTCGGCGCGATGGTATGGCATCTTATATTA TTCTCTCTTATTCTTTATTAAGTTTCCTGTGAAAGGATAAGAAACATTAACCTGCCCCATATGGATATAGGACCTTATTT AGGTACCTATTGTGTTATATGTATTTAAAATGCCTCTTACTGAGTTAGAAACATCGAGCTCCACATTTTTTTTCCGTGCA CAATGGTGGCAATAAGTTTTGAACACATAACCTCAGCAAGCTACCCAAGCTTCCTCACTCATCATGTATTATACATTACG GTGTTTTTCTTGCAGTAGAACTTTTGTTTTGAGAGATCAATTATGTTTTTTTAGCATGGCAAGGAAGATTTTATCTTATT TGAAAGAGGACAGCCAGCAGTGTTTTTCTCATTTTTACTTTCAGGGTTAACATGACATGTTACAGTTCACGTTAGTATGT ATCATATTTGGGTTTATAGATTCTGAGCTCACTTATGGAAAGCATTTTAATTTAGCTTGTATTACTTTTTTTCCCTTCTT TCAAACTGATAATTTGTCTTGTTGCTGTGTTATATCTTAAGGGAAAATTCGCCTCATCAAGAGTGGAGAGAGCGCTGATA AAATTTCCTTGGATGAGCTGCGTAAGTTCTTTTGACCACAGTTGCAAATGATGACATGTTATAATAGGGGTTTCCTCAAG CTTTGCTGTATTATATTTTTCTTCTTTGATTTAGAAAACCATTAGGTTTAACGAAAAAGTAAGTAAAAGGACTTTCAACT CAATTCTGAAAAGTTTTCTCACTTACGTGCGTGTTTGGATACCAATTGAGTACAATGTGAACGACTTTCATTCCAATCCA TAATTAGAGTATTAGAGTTTCGTTCATTTTTTGTCTCAAAGTGAGTGCTAACATCTGTTTTTACTGATCGGGTATCCAAA CATAACCTGTAAAATCACTTTCACTTTCAATCTAAACATGCACAGTTGTGGGACACATAACCACAGTGTTTTTGCCATTG ACTGGTATTTTGCCTGACTGTAATGAACTCATGCTTTGCAGGAGAAGGGTTGTTTTAGTAGAAGTCTCCCCATCTAATTG AAGCATCTGCAAATGTAAGAATCAAAGCTTTGTCACGTGTAGCAGCATTTGTAATACTTATGAATGCTTTGTCTTATTAT TTTTTCAAATATATCATTTAGCATTCTGAATTTCAGTCTCTGGTATTCATTTTCTTGTATGGAGAGCTGTAGAAGAATGT TTTTTGTCTTAATTACAAATCTTGTAATTAGATATGAGTATGATACTAATCAGTTGATACTTAGAAGTACGTAGTTCTAA ATTTGTCTGTCTTTCAGTCTTTCTTCTAAATTTGATGTACAAATGGGTAATTGATTCTGGATAAAATTAGGTTAGGCCAA AATTTAATTAATAGTTAGTATTAAGTTTTTAAAGAATTTGCCACTACAATTTTTACTCGATTATGTTTTGATTGCTATTT TGTACCAAATTTGTGTAAGGGTTCTAATATTGTTGACTATTGGAGTATAAATTTGTGTAAGGGTTCTAATATTGTTGACT ATTGGAGTGTAAATTTATGTAAGG
CDS sequence (LotjaGi5g1v0227500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCCATTGCAGTAAGAGTTGCGAAGCATCTTCGAATCACTTCCAACGTTGGTGTTGCTGGTGGTGGTGTGTGGCG GAGACACGGGCCGGCGGCGTCATGGTACTCAACATTTCTGTCTGAAGGTGAGGGTGATCAGCCTTCGCGTGGTAATGGTG GACTTAACAATGAGGAGTTGGATGAAGAAATTGATGATTTTCTTGGTGGCAAGCCTGAACTTCAGCTGCAAGGTGTCGAT CCCAAAAGGGGTTGGGGATTTCGCGGTGTGCACAAGGCAATTATTTGTGGAAAAGTTGGCCAAGCCCCTGTACAAAAGAT ATTGAGGAATGGGAAGAATGTGACCATCTTTACAGTTGGGACAGGGGGGATGTCTGACCAGAGAATTGTAGGAGCAAGGG ATATGCCAAAACCTCCTCAATGGCATCGCATTGCCGTGCATAACGATGTGCTGGGGGCCTATGCAGTGCAACAAATTTGT AAAAACTCTTCAGTTTATGTTGAGGGTGACATTGAGACTCGAGTTTATAACGATAGCATTAATGGTGAAGTTAAAAGCAT TCCCGAGATATGTGTTCGGCGCGATGGGAAAATTCGCCTCATCAAGAGTGGAGAGAGCGCTGATAAAATTTCCTTGGATG AGCTGCGAGAAGGGTTGTTTTAG
Protein sequence (LotjaGi5g1v0227500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSIAVRVAKHLRITSNVGVAGGGVWRRHGPAASWYSTFLSEGEGDQPSRGNGGLNNEELDEEIDDFLGGKPELQLQGVD PKRGWGFRGVHKAIICGKVGQAPVQKILRNGKNVTIFTVGTGGMSDQRIVGARDMPKPPQWHRIAVHNDVLGAYAVQQIC KNSSVYVEGDIETRVYNDSINGEVKSIPEICVRRDGKIRLIKSGESADKISLDELREGLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 39 | 58 | 20 | - | – | |
| MobiDBLite | 40 | 54 | 15 | - | – | |
| PANTHER | 52 | 219 | 168 | 1.5E-89 | – | |
| PANTHER | 52 | 219 | 168 | 1.5E-89 | ||
| Gene3D | 87 | 207 | 121 | 2.3E-23 | – | |
| SUPERFAMILY | 88 | 198 | 111 | 6.17E-16 | ||
| Pfam | 90 | 193 | 104 | 7.2E-21 | ||
| ProSiteProfiles | 90 | 199 | 110 | 11.704 | ||
| CDD | 94 | 194 | 101 | 8.33667E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi5g1v0227500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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