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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0227700 |
| Transcript ID | LotjaGi5g1v0227700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|K7N0N9|K7N0N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0227700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53502055..53505152) extracted from Lotus japonicus Gifu genome v1.2.
TGGCCAAAAATTTTGGGTACGGCTAAACTGGCAATGAGTTTCCACCAGAATCACAATATCAGGTCTATTGACTCGAATAA AATCCTTTAACGCTAACTTAGCATTAGCGTTCAAAGCTCCCCTAATGTTCCACATGAACACAGTAAATTCTTCAAACCCA ATCATGAGAAACTATATAGGGGATATGTAGCCAGTACGGACTAGCATGTGCCTCCCGCATCCTGGAAAGCCACTTCCTTC TCCAACAAATCGCACTCCATGCCACCCATACCCTCACCGTTTTTAGGCTGGCCAGCGACATCCTGGTGCACCATGTTCTG ATTTCCCTGGACACACCCCATAGTACTATGGTAGTTAGCAATCATAATGTCATCAATATTGTCCACCTGCGGTCGTGGCA GACTAGAGGAGGAGGCCCTTATCCCATCTAATAGAGGTGGACCCTGCTGTGTGACTGCGTTCGCATTACTCTTTGATTGT CCTGCCTGGCCCACTCCCACGTTCCGGGGGCGCTTTCGGTTGGGCAGTTGGGAGGGATCAGCCGAAAAGGAAAATTTGAG TTGGACCTAAAACAAAAATAAATAAAATAAAATAAGCGGCCAGAAAGTAAAGTAGTTGATCGCAATCGCATCATCCATCC TTGCCGAAATCCCAATGAAGCTCCTCCTCCGTGTTTCATTCACCGTTGCCACCCTCAAAACCTTTCGGATCCGCGGCTTC GCTGCTGGGAAAGCAACGACTGAGAAGTGTTTGGTTTCATTCAATGCAGTTATTAAGAGATTGTGTGGGGAAGGCAGAAT CAGAGAGGCTGAGACAGTGCTTCAGGAGATGACTGACCCTGATTGTGTCACTTACAACACCTTGATCAGTGCCGCGTGTG AGGCGGAGAAGAATCACAATCTGAGTATTCCTTATGTACGTATTGTTGAGCTTTATCATCAGATGTGTGTCAGGGAGTTG AGTCCCAACGAGACCACTTACAGGTGTATGATTCGATTGTTCTGCGATCGTAACAGGGTTGAGGAGGCTGTGGGGATTTT GAGGCTCATGGCTGAGAAGGGTTTGTCCCCTCATGCTGATAGTTATAGCAGGATTATATCCCGGTTTTGCATAAACAAGG AGATGGGTAAGGCCTTGGAAATGAAGGTAGAGATGCTTGACAAGGGCATCTTTCCTGATGTTCACGCGTATGTTTTGCTT ATACAGCTACTGTGCCACCAGCGGAGACTGTTGGAAGCTCGTGATCTCTTCCAAGAGATGCTGCTCAGGGGTATGTCGCC CGGAGGGCGTACTTATGATACTTTGGTGGAGGCTTATTGTCTTAAAGGTGAATTCAGTAAGGTTTTTCATCTGCAGGATG AAGTCATACAAAAGGGTTTTTTGCCTTATTATGTTACTTCCTTTTCACCGTCTCTTGTTACATACAACGCTCTTATTCAT GGGCTTTGCTTTTTCCAGAGGCCTGACGAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGCTCTTGGACCCTGATGA AGTTAGTTATAGCGCTGTTATATCCGGGTTTCGCCGAATCCGGGAGCTGCGGAAGGCGTTTGAATTGAAGCTGGAGATGG ATCAAAAAGAGACCTGCTGGCCGCTGGATCAAGACACAAATGAATCACTTGTGAAAGACTTGTCGAATCACGATACTTTT TCTAGTCTCGTGAATGATTATTGTGCTGAAGATAAGGCGGAAATGGCTTTTAAATTGCGATATCAAGCTCAATATTTGCC AGATTCGGTTAGCTATTGTTTGTTACTTAATGGACTTCATAAGAAAGCTACGTCAAGATTTGCTAAGAGGCTTCTTCTGT TTTATATTGTTGCTCACTGTTTGACTATCCCAAGTTATATAATATATGATATTCTGATAGAGAAATGTGCTAATAATGAA TTTAAGAGTGTGGTAGAGCTTGTCAAAGGTTTCAGAATGAGAGGTTTAGTGAATGAAGCAGCCAGAGCTCGTGACACAAT GCTTCACAGGAATTATAAGCCAGAGGGAGCAGTTTATAACTTATTAATATTTGATCATTGTATAGGTGGTAATGTTCATA AGGCATATGATATGTACAAGGAGATGCTGCATTATGGTTTTGTTTGTCATATGTTCTCTGTACTTGCTCTTATTAAGGCT CTATATTGTGATGAAAGGTACAATGAGATGAGTTGGGTTATTCGAAACACATTGAGGAGCTGTAATCTCAATGACTCTGA GCAACTTAAAATACTTGATGAAATTGACCCCGAGAGATGTATAATTTATGCTCTTTTGGATGTGCTAGCTGAAAAAGCCA TGGATGGCTTGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCGTCGTGTCATGGCCGCTTCACTCCCACCACAATG GAAACAACACAGTACATGCCCGAGGAGATGGTTCATGTGACCTCATCCACTTAAAGAATAACAAACAACACACCAGACGG TGCTCCTTCCCTAGTATTTCCAGAACCCCTTCCTCCATACTGAGCCAGATGCTGTTGCAAGTTCCTTGCAAGCTGAACAA TTTCCCCACAACACCGTCAGGCAGAGAAATTACCCCAAGCTTTTCAAGGGTAACCTTACTAACTCATTTCTTTCACTGTT GCGTTCATATCTTGTGTGTCCATGATCTGATTGTGGACTCTTGCTTAGATCTGGTGGTGGCCACTTCCTCTTCTCTCTTG TATTTTAATTGTGTATAAAGACTGGATTTTGTTGTATTTTATTGTGTCTTAATTTAATGGATTTTGTTGTATTTTATTGT GTCTTATTTTAATGGATTTTGTTGTATTCTTGCCTGCATTTTTGGAATACATTGACCACTTTTAAAGTTTAAAGAACTAA GATTCATTTAAGCTTTTCTTAAAATGAAGTTTGTTTTAATTGAGTGGTGGCACGAATAAAAGTTGTTGTTGGGATGTGCA TCAAAGCAATTTCCAAATCTGGTATGGTTTGCAAAGATAACTTCATTGTTTTTAATTAGTTGAATGCTTTCAGAAAATAA GTGTCTCAAGTTCAATTGAGAAAGAGACAACAAAGAGGAACTGACACATAACGTTTAA
CDS sequence (LotjaGi5g1v0227700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCTCCGTGTTTCATTCACCGTTGCCACCCTCAAAACCTTTCGGATCCGCGGCTTCGCTGCTGGGAAAGC AACGACTGAGAAGTGTTTGGTTTCATTCAATGCAGTTATTAAGAGATTGTGTGGGGAAGGCAGAATCAGAGAGGCTGAGA CAGTGCTTCAGGAGATGACTGACCCTGATTGTGTCACTTACAACACCTTGATCAGTGCCGCGTGTGAGGCGGAGAAGAAT CACAATCTGAGTATTCCTTATGTACGTATTGTTGAGCTTTATCATCAGATGTGTGTCAGGGAGTTGAGTCCCAACGAGAC CACTTACAGGTGTATGATTCGATTGTTCTGCGATCGTAACAGGGTTGAGGAGGCTGTGGGGATTTTGAGGCTCATGGCTG AGAAGGGTTTGTCCCCTCATGCTGATAGTTATAGCAGGATTATATCCCGGTTTTGCATAAACAAGGAGATGGGTAAGGCC TTGGAAATGAAGGTAGAGATGCTTGACAAGGGCATCTTTCCTGATGTTCACGCGTATGTTTTGCTTATACAGCTACTGTG CCACCAGCGGAGACTGTTGGAAGCTCGTGATCTCTTCCAAGAGATGCTGCTCAGGGGTATGTCGCCCGGAGGGCGTACTT ATGATACTTTGGTGGAGGCTTATTGTCTTAAAGGTGAATTCAGTAAGGTTTTTCATCTGCAGGATGAAGTCATACAAAAG GGTTTTTTGCCTTATTATGTTACTTCCTTTTCACCGTCTCTTGTTACATACAACGCTCTTATTCATGGGCTTTGCTTTTT CCAGAGGCCTGACGAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGCTCTTGGACCCTGATGAAGTTAGTTATAGCG CTGTTATATCCGGGTTTCGCCGAATCCGGGAGCTGCGGAAGGCGTTTGAATTGAAGCTGGAGATGGATCAAAAAGAGACC TGCTGGCCGCTGGATCAAGACACAAATGAATCACTTGTGAAAGACTTGTCGAATCACGATACTTTTTCTAGTCTCGTGAA TGATTATTGTGCTGAAGATAAGGCGGAAATGGCTTTTAAATTGCGATATCAAGCTCAATATTTGCCAGATTCGGTTAGCT ATTGTTTGTTACTTAATGGACTTCATAAGAAAGCTACGTCAAGATTTGCTAAGAGGCTTCTTCTGTTTTATATTGTTGCT CACTGTTTGACTATCCCAAGTTATATAATATATGATATTCTGATAGAGAAATGTGCTAATAATGAATTTAAGAGTGTGGT AGAGCTTGTCAAAGGTTTCAGAATGAGAGGTTTAGTGAATGAAGCAGCCAGAGCTCGTGACACAATGCTTCACAGGAATT ATAAGCCAGAGGGAGCAGTTTATAACTTATTAATATTTGATCATTGTATAGGTGGTAATGTTCATAAGGCATATGATATG TACAAGGAGATGCTGCATTATGGTTTTGTTTGTCATATGTTCTCTGTACTTGCTCTTATTAAGGCTCTATATTGTGATGA AAGGTACAATGAGATGAGTTGGGTTATTCGAAACACATTGAGGAGCTGTAATCTCAATGACTCTGAGCAACTTAAAATAC TTGATGAAATTGACCCCGAGAGATGTATAATTTATGCTCTTTTGGATGTGCTAGCTGAAAAAGCCATGGATGGCTTGTTA CTTGATGGTGGAAAGTGTTCATATGCTTCAGCGTCGTGTCATGGCCGCTTCACTCCCACCACAATGGAAACAACACAGTA CATGCCCGAGGAGATGGTTCATGTGACCTCATCCACTTAA
Protein sequence (LotjaGi5g1v0227700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLLRVSFTVATLKTFRIRGFAAGKATTEKCLVSFNAVIKRLCGEGRIREAETVLQEMTDPDCVTYNTLISAACEAEKN HNLSIPYVRIVELYHQMCVRELSPNETTYRCMIRLFCDRNRVEEAVGILRLMAEKGLSPHADSYSRIISRFCINKEMGKA LEMKVEMLDKGIFPDVHAYVLLIQLLCHQRRLLEARDLFQEMLLRGMSPGGRTYDTLVEAYCLKGEFSKVFHLQDEVIQK GFLPYYVTSFSPSLVTYNALIHGLCFFQRPDEALEILRGMPEMLLDPDEVSYSAVISGFRRIRELRKAFELKLEMDQKET CWPLDQDTNESLVKDLSNHDTFSSLVNDYCAEDKAEMAFKLRYQAQYLPDSVSYCLLLNGLHKKATSRFAKRLLLFYIVA HCLTIPSYIIYDILIEKCANNEFKSVVELVKGFRMRGLVNEAARARDTMLHRNYKPEGAVYNLLIFDHCIGGNVHKAYDM YKEMLHYGFVCHMFSVLALIKALYCDERYNEMSWVIRNTLRSCNLNDSEQLKILDEIDPERCIIYALLDVLAEKAMDGLL LDGGKCSYASASCHGRFTPTTMETTQYMPEEMVHVTSST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 392 | 392 | - | – | |
| Gene3D | 20 | 85 | 66 | 1.2E-9 | ||
| PANTHER | 29 | 246 | 218 | 2.7E-67 | – | |
| ProSiteProfiles | 32 | 66 | 35 | 9.197 | ||
| TIGRFAM | 34 | 60 | 27 | 7.7E-5 | ||
| Pfam | 34 | 60 | 27 | 9.5E-4 | ||
| Pfam | 66 | 184 | 119 | 9.7E-12 | ||
| Gene3D | 87 | 189 | 103 | 3.0E-22 | ||
| ProSiteProfiles | 105 | 139 | 35 | 11.772 | ||
| TIGRFAM | 108 | 139 | 32 | 3.4E-6 | ||
| ProSiteProfiles | 140 | 174 | 35 | 8.944 | ||
| TIGRFAM | 143 | 176 | 34 | 8.6E-5 | ||
| ProSiteProfiles | 175 | 209 | 35 | 11.224 | ||
| TIGRFAM | 178 | 209 | 32 | 2.2E-5 | ||
| Gene3D | 190 | 340 | 151 | 9.1E-28 | ||
| ProSiteProfiles | 210 | 244 | 35 | 9.624 | ||
| Pfam | 213 | 242 | 30 | 0.094 | ||
| TIGRFAM | 213 | 244 | 32 | 0.0024 | ||
| PANTHER | 250 | 364 | 115 | 2.7E-67 | – | |
| Pfam | 252 | 299 | 48 | 3.0E-10 | ||
| ProSiteProfiles | 253 | 287 | 35 | 10.698 | ||
| TIGRFAM | 255 | 282 | 28 | 0.0012 | ||
| ProSiteProfiles | 288 | 318 | 31 | 8.155 | ||
| ProSiteProfiles | 338 | 368 | 31 | 5.59 | ||
| PANTHER | 339 | 520 | 182 | 2.7E-67 | – | |
| TMHMM | 393 | 415 | 23 | - | – | |
| Phobius | 393 | 411 | 19 | - | – | |
| Phobius | 412 | 483 | 72 | - | – | |
| ProSiteProfiles | 422 | 456 | 35 | 6.412 | ||
| Gene3D | 423 | 541 | 119 | 5.4E-9 | ||
| ProSiteProfiles | 457 | 491 | 35 | 8.32 | ||
| TIGRFAM | 460 | 490 | 31 | 0.0022 | ||
| Pfam | 460 | 489 | 30 | 0.0029 | ||
| TMHMM | 483 | 505 | 23 | - | – | |
| Phobius | 484 | 504 | 21 | - | – | |
| Phobius | 505 | 599 | 95 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0227700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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