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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0234900 |
| Transcript ID | LotjaGi5g1v0234900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein 1; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q9M263|GL24_ARATH Germin-like protein subfamily 2 member 4; TrEMBL-Plants: tr|I3T820|I3T820_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0234900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54315391..54317710) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAAGATAGAAAGAAAATGGTTGGTGACTTAGGGTGACAGAAACAAATGAAGAACCGGCACGTTTCGTGCTTGTTTGC AACCCAAACCTTAGATGCTCTCTCTCTCTTTCTCTGACTTGCTATAAATACACCAAACCCCACATTTTCAAATCAACTTG TTTGTTTCTTTATTAATTGTTTCATTTACTTCTTCTTTGCCGATTTTGTTATCTTATATGCTGGCTTACTGAACCATATT CTTTTATATATTTAGACATTTAGTTGGTCACTTAATTACTTGCTTCTTATTTCAATTCAATTTCATACACATCATATCAT TCCTCATATTCATACCATGAAGCTCGTTGACTCTCTGCTTCTCTTTGCTTTGCCTCTGGCTCTGCTCTTAACCACTGCTT TCTCATCAGATCCTGACTACCTTCAAGATCTCTGTGTTGCCGACCCTGCCTCAGGTACTCTTTTATCTATATCATCCTAT TATTCTCTTTGGTTATGCCGCGAGAAGTCTCATAATCAATTATGGAGAGAAACTGTAAAGTGTAGCTTCTGCATTTACCG TGATTTAGTTTGTATGTTTGTCACTAATAACAACATGCTAAGACCACAAAGTGGAGAAGTTTGCAAACTTTCATGCATCC AACAAATGTAAATTGAAGAAAAATAATACCCCCTCTCCCGCGTCCCTATTCTTTGAAAATATTTTTGTTTCTTTCTGATT AATTAGAATTGATCCTTTTTCTTTACTCCTTTTTTGTGTTTCAACCACAATCACAATCAATAAGGCAAACCACTTCTACC AACTACTTTAATTTTGCTTTTTACTGACTCCACTGTCTAATCATGTTGAGTATAGTAAAGTATTGCCACTATCATGGTTA AGTAATTGATTATTGATTTGTCTCTTTCCTATATTAGTTAACAGCACCAGCTGAGTAGTTCGGTTTTATTATTAAGTATA TTCCATGCTCGGCACTAATGAGTGCGTACTTCAACTGATACATACTTGATTCTCAATCCGAGAATAATCTCATGCTTAAG TATTGTATATGAAAAAATCTTAGAGAGAATTAATCCTATCAAAATGTGGATATTTTCAGCTACAATGCCTCATATGGGGT TCATGTGTAAAACAATTAAAAGTACTCATAATTCTTCCACCATGATTGGAAATGAGAGTTCTATAATCAAATCTTTTCCT ACAAGTTTAATGACAATTAGTGGATTTTTCTCCTTTCTTGAAAAATTTGTTGTTGCAAAACAGGTGTGCCAGTGAATGGA TTCACTTGCAAAGAAGCATCCAAGGTGAATGCCTCTGATTTCTTCTCCAACATACTAGCCAAGCCAGGAGCCACCAACAA CACCTTTGGTTCCTTGGTGACCGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACACTTGGAGTCTCTCTGGCAAGGA TTGATTATGCCCCAGATGGCCTCAACCCGCCCCACACCCACCCACGCGCCACAGAGGTGGTGTTTGTGCTTGAAGGGGAA CTAGATGTTGGGTTCATAACCACAGGCAATGTGCTCATATCAAAGCACATAGTCAAGGGTGATATATTTGTGTTCCCAAA AGGCTTGCTTCACTTCCAAAAGAACAATGGCAAGGTTCCTGCTGCGGTGCTTTCAGCCTTCAACAGCCAACTTCCGGGGA CACAGTCAATTGCAACCACCTTGTTTGCCTCAACGCCTACTGTGCCAGACAATGTTTTGACCAAGACCTTCCAAGTTGGT ACCAAGCAGATTGAGAAAATCAAGTCTAGGCTTGCACCCAAGAAGTAAATTTACCAAGTTGGTTTGGTTTTCATGTTTCT GCCAATTGTTTTTTTTTCCCCTCCTTATAATATTTGTCATTCTGGAATTCTTGTAAGGATCTCATAAGCAAATTGGGCAA GTGCATTTGTTTGTTAATTAAAATTTGAAAGGTGATTGTATTACTTGTTAATCAAATCAATCACCAGTGGCTCTGTTGAA TTGTTATTGCTACCTTATATTATTCTTGTGTGAGGGAACAAAAAGTGACCCCAGCCCAGACTCTCACTTTCTGGTTCTTA ACTCTTTCATGATCGTCCCTTTCCTATTTACTTTTCAATTAGCTAGGCAAGTTAGCTTTGAAATTATTGAAGCTTCCTTC ATGAACCTTTGAATCCCTTTCTTTATCATTTTTGTCCGTTTCCTGCCAAATATGTGAATAAATTGAAATACCAAATCCAT TGAATTATTGAAAGTTACCAACAAAATCCATCGAATTAAAAGTATAAACTAGGATAATAACAGTAAAATGAAATGATAAT
CDS sequence (LotjaGi5g1v0234900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCGTTGACTCTCTGCTTCTCTTTGCTTTGCCTCTGGCTCTGCTCTTAACCACTGCTTTCTCATCAGATCCTGA CTACCTTCAAGATCTCTGTGTTGCCGACCCTGCCTCAGGTGTGCCAGTGAATGGATTCACTTGCAAAGAAGCATCCAAGG TGAATGCCTCTGATTTCTTCTCCAACATACTAGCCAAGCCAGGAGCCACCAACAACACCTTTGGTTCCTTGGTGACCGGA GCCAACGTTCAGAAAGTCCCAGGACTCAACACACTTGGAGTCTCTCTGGCAAGGATTGATTATGCCCCAGATGGCCTCAA CCCGCCCCACACCCACCCACGCGCCACAGAGGTGGTGTTTGTGCTTGAAGGGGAACTAGATGTTGGGTTCATAACCACAG GCAATGTGCTCATATCAAAGCACATAGTCAAGGGTGATATATTTGTGTTCCCAAAAGGCTTGCTTCACTTCCAAAAGAAC AATGGCAAGGTTCCTGCTGCGGTGCTTTCAGCCTTCAACAGCCAACTTCCGGGGACACAGTCAATTGCAACCACCTTGTT TGCCTCAACGCCTACTGTGCCAGACAATGTTTTGACCAAGACCTTCCAAGTTGGTACCAAGCAGATTGAGAAAATCAAGT CTAGGCTTGCACCCAAGAAGTAA
Protein sequence (LotjaGi5g1v0234900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLVDSLLLFALPLALLLTTAFSSDPDYLQDLCVADPASGVPVNGFTCKEASKVNASDFFSNILAKPGATNNTFGSLVTG ANVQKVPGLNTLGVSLARIDYAPDGLNPPHTHPRATEVVFVLEGELDVGFITTGNVLISKHIVKGDIFVFPKGLLHFQKN NGKVPAAVLSAFNSQLPGTQSIATTLFASTPTVPDNVLTKTFQVGTKQIEKIKSRLAPKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 11 | 219 | 209 | 6.3E-111 | – | |
| PANTHER | 11 | 219 | 209 | 6.3E-111 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 220 | 197 | - | – | |
| Gene3D | 24 | 218 | 195 | 3.5E-79 | ||
| SUPERFAMILY | 55 | 215 | 161 | 2.43E-44 | ||
| SMART | 61 | 210 | 150 | 5.2E-37 | ||
| Pfam | 64 | 209 | 146 | 2.3E-47 | ||
| ProSitePatterns | 105 | 118 | 14 | - | ||
| PRINTS | 110 | 130 | 21 | 2.5E-26 | ||
| PRINTS | 140 | 160 | 21 | 2.5E-26 | ||
| PRINTS | 173 | 188 | 16 | 2.5E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi5g1v0234900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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