Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0236200 |
| Transcript ID | LotjaGi5g1v0236200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein 1; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q9M263|GL24_ARATH Germin-like protein subfamily 2 member 4; TrEMBL-Plants: tr|I3T5U1|I3T5U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0236200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54417816..54419399) extracted from Lotus japonicus Gifu genome v1.2.
CTGACTATAACCATTGTTGCTCGTTTACAAATGATCCATGCATATATAAAGGCAAACTTATTGCCACATTTCTTACCATC CAACTCAAACATTTATCTTCTCTCTAGCTACATAATAAACATTTCTGTTCTGTTTCTATTCATCATTCCAAACCATGTCA ACAACCAAAACTTTGGCAATCTTGGTCATCTTCTGCTGTACCATCTCTTATGTCCATGCTTCTGATCCTGACACACTTCA AGACCTTTGTGTAGCTCTTCCTTCTTCAGGTAATGTACATTACAATTCACCAATTTGATTTCTCTATTTCTGCTCCTCGA TAAAATAAAGGTTAAGTCACAAAATAGGTAATCTTAAACAATAATACTTAGCACTCTTTTACCTAACAAAAAGTATCTAC AACCAAATATTTTCTAACAAATAAAATTTGAACGAGACACACGAAAGTTATATGTCTTCTCATAATTTGTTGCTCAACAA AATATGAAGAGTCCATTTTTATACTTTCTGATTGGTATCCAAACAGACCTAGGGTCTAAGTTGCTATTGTTTAGGGAAGC TAACCAATCAAATACATTTTTATTTAATGGAAAAATACAGAAACAGAAAAAATTGGGCAAATCTAAATAAATTGTACCAG AGTTGTGTTATGAAAACCATAAATTGATGTACATGGTGTGCTATGTGCAGGAGTGAAGGTGAATGGATTTGCCTGCAAGC CAGAGGCAAATGTCTCAGCAGCTGATTTCTTCTTTGCTGGTCTAGCCAAGCCTGGAGTCATCAACAACACAGTGGGATCA TTGGTAACTGCAGCCAATGTGGAAAAAATTCCAGGACTCAACACATTGGGTGTATCTTACTCAAGGATAGACTACAAAGC CGGGGGACTTAACCCTCCACACACACACCCTCGCGCCACTGAGGTTGTGTTTGTGTTGGAAGGTGAATTAGATGTTGGTT TCATCACCACAGCCAACAAGCTCATCTCAAAGTCCATTAAGCAAGGTGAAATCTTTGTGTTCCCAAAGGGTTTGGTGCAC TATCAGAAGAACAATGGGGATAAACCTGCTTCTGTGCTTTCTGCATTTAGTAGTCAACTACCTGGTACCTTGTCTATAGC TTCTGCTCTCTTTGGATCAACACCAACTGTGCCTGATGATGTGCTTTCCCAGGCCTTTCAGATTGATGCTAAACAGGTTG ATGCAATCAAGACCAAACTTGCTCCAAAGAAGGCTTAATTAAGTATAAGCTAGATGCATATTCAAGTTATAAACGTACTT AATTTCCCTTTATTTTTGCCAATAATTCTTGAAGGGATATGATTAATTGATTATGTATTGTACCACGTATGGTGTTACAT TTGAGTGTAAAATAATTGGTATCGAAGATTATAATGTGTTAAGAATGATGCGAATTCTATGAAGTAGAAGCTGTTATCTT TTATGTGGATGAGGTTTCTTTTCTTGTTTTTGGGGCTCATTGATTTTGTGGACAATGAACAGCGATTGGAACTTTATCAC CTTACTCTTTCTTTCATGTTGGTTTGGTAGTTAAATGAGTATGGTATAGATGCAGACATTGGAC
CDS sequence (LotjaGi5g1v0236200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACAACCAAAACTTTGGCAATCTTGGTCATCTTCTGCTGTACCATCTCTTATGTCCATGCTTCTGATCCTGACAC ACTTCAAGACCTTTGTGTAGCTCTTCCTTCTTCAGGAGTGAAGGTGAATGGATTTGCCTGCAAGCCAGAGGCAAATGTCT CAGCAGCTGATTTCTTCTTTGCTGGTCTAGCCAAGCCTGGAGTCATCAACAACACAGTGGGATCATTGGTAACTGCAGCC AATGTGGAAAAAATTCCAGGACTCAACACATTGGGTGTATCTTACTCAAGGATAGACTACAAAGCCGGGGGACTTAACCC TCCACACACACACCCTCGCGCCACTGAGGTTGTGTTTGTGTTGGAAGGTGAATTAGATGTTGGTTTCATCACCACAGCCA ACAAGCTCATCTCAAAGTCCATTAAGCAAGGTGAAATCTTTGTGTTCCCAAAGGGTTTGGTGCACTATCAGAAGAACAAT GGGGATAAACCTGCTTCTGTGCTTTCTGCATTTAGTAGTCAACTACCTGGTACCTTGTCTATAGCTTCTGCTCTCTTTGG ATCAACACCAACTGTGCCTGATGATGTGCTTTCCCAGGCCTTTCAGATTGATGCTAAACAGGTTGATGCAATCAAGACCA AACTTGCTCCAAAGAAGGCTTAA
Protein sequence (LotjaGi5g1v0236200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTKTLAILVIFCCTISYVHASDPDTLQDLCVALPSSGVKVNGFACKPEANVSAADFFFAGLAKPGVINNTVGSLVTAA NVEKIPGLNTLGVSYSRIDYKAGGLNPPHTHPRATEVVFVLEGELDVGFITTANKLISKSIKQGEIFVFPKGLVHYQKNN GDKPASVLSAFSSQLPGTLSIASALFGSTPTVPDDVLSQAFQIDAKQVDAIKTKLAPKKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 5 | 219 | 215 | 1.1E-118 | – | |
| PANTHER | 5 | 219 | 215 | 1.1E-118 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Gene3D | 23 | 218 | 196 | 5.9E-79 | ||
| Phobius | 23 | 220 | 198 | - | – | |
| SUPERFAMILY | 53 | 215 | 163 | 6.01E-45 | ||
| SMART | 61 | 209 | 149 | 2.4E-37 | ||
| Pfam | 62 | 208 | 147 | 8.3E-48 | ||
| ProSitePatterns | 104 | 117 | 14 | - | ||
| PRINTS | 109 | 129 | 21 | 8.6E-26 | ||
| PRINTS | 139 | 159 | 21 | 8.6E-26 | ||
| PRINTS | 172 | 187 | 16 | 8.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi5g1v0236200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…