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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241600 |
| Transcript ID | LotjaGi5g1v0241600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G02420.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420; TrEMBL-Plants: tr|I1JBD3|I1JBD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0241600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54993198..54996019) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCCAACAGCCCTCAACCTCCCACCTAGTGTGAAAAATTGCATCTGATACGCATCGCGAATTACACACAAGATGAAA AAAACTAAAAATTTGCTACAAAATTGAATCAGATGAACGAATCATTATAATTTGCTACTTGTAATGTATATAAAATAAGA GCTTATGCTTACATCAACAAGCTTATATGAGATAAGTACTTATTGTCATTAGTGCTTAAAGAAGCTATTCACCCAAACTG AACAAAGTGAATCAAGTTTGCGGCACCTCAGTGAGCTTTGTAGTCTCTGTCATCACCACCACTCCATCACCCACCACTCA AACTCAAAATGTTGCTGAAGCGTTGCACATTTCAATCCCAATCCACGTTCCTCCCCGCTCCAAATCTCATCCTCTCGCGC CTCCTCAGCTCCACCCTCAACGACGGCGACGTACACAGAGTCATGACCATCATCACCACCACTTCCTCGCCGGAAAACCT GCGACAATCCCTCAAATCAAGCGGCGTTTTCCTCTCAAACGAACTCATCGACCAAGTCCTCAAAAGGGTCCGTTTCAGCC ACGCAAACCCCTCCCAAACCCTCGAGTTCTACCGCTACACTGGCCGCAGAAAAGGGTTCTTCCACACCGCGTTTTCCCTC GACACCATGCTCTACATTCTCGGGAGAAGCCGCATGTTCAACCATATCTGGGACCTTCTCATCGAAGCGCGGTGGAAAGA CCAAACTCTCATCACCCCGCGCACTGTCATGGTTGTCTTGGCCAGAACAGCGAAGGTTTGTTCTGTTAGACAAACTGTGG AGTTTTTCAGAAGGTTCAAGAAGCTGGTTCCTGATTTTGATACTAACTGTTTCAATGCATTGTTGAGAACTTTGTGTCAG GAGAAGAGCATGACGGATGCTAGAAACGTGTATCATAGTTTGAAGCATCAGTTTCGGCCGAATTTGCAAACGTTTAACAT TCTGCTTTCTGGGTGGAAGACCCCAGAGGACGCTGAGGTGTTCTTCAAGGAGATGAGGGAGATGGGGGTGACGCCTGATG TTGTTACGTACAATAGTTTGGTGGATGTTTACTGCAAGGGTAGGGAGTTGGAGAAGGCCTATAAGGTGCTCGATGAAATG CGTGAACGGGATTTGTCGCCGGATGTGATTACATACACGAGTATAATTGGTGGGTTGGGGTTGGTTGGTCAGCCGGATAA AGCTAGAGATGTTTTGAAGGAGATGAAGGAGTATGGCTGTTACCCTGATGTCCCGGCGTACAATGCTGCCATTAGGAACT TTTGCATTGCGAAGAGGCTTCGTGAGGCTTATGATTTGGTGGATGAGATGACGAGCAAAGGTTTAAATCCGAATGCTACT ACTTACAATTTGTTTTTCAGGATTTTTTACTGGTCTAATGATTTACAGAGCTCCTGGAACATGTACCATAGGATGATGGG GTTGGGATGCCATCCGAATACACAGTCTTGTATGTTCTTAATAAGGCTGTTTAAGAAGCAGGAAAAGGTGGAGATGGCGC TGCAGCTATGGGGTGACATGGTGGAAAAGGGTTTTGGCTCCTATACTTTGGTTTCTGATGTGCTGTTTGACTTGCTTTGT GATATGGGGAAGTTGGGAGAAGCAGAGAAGTGTTTCTTGGAGATGATTGAGAAGGGGCAGAAGCCGAGTAATGTTTCATT TAGGAGAATCAAGGTTCTCATGGAACTAGCTAATAGACATGAGGCCCTTCAGAACTTGACACAGAAAATGGCCGTGTTTG GGCGACCAGTCCAAGTTCGTGAAAGTAGACCAGTCCAAGTTCATGAAAGTAGAGAGAGCGCGATTGATACTTAAGTTATA GACTTATAGCATAACTTTTAACCCATAATTCTACTTCCAATAGTCATGACAATGTGGAAGGAGGAGCAAGAGATCTTGAT GTTGTGGCAGAAGTTGTAGGAAACATGACTCAGGGATCAGTCATATGAATATATCTTTCAGAATATGTCGTGGAACGTGT GTGAAAGATTCAAGAAACCTAGCTGACAAAAGAGGGTTGGACAATTATTTAGGTGAGCGGCATTCTACATAATGGGGATT TTTCTGGCTTCACTTAGACAGTGATCAGCATCAGCTGTATGAACGTGTGATCTATGCTTCTAGGAAAAAATGCACACGGG TTTTAAACATTTTGCATAAGAGAAGTGTTTGTAAGTGGTTGGCTTGTGATGTTACTGTTATAGCTAATCTGTTACTCTTA ACTTCTGGGAACTCATACTTCAAGCTTACTACATGCTCATCATGACTTATAGGTCAGGAAATAAAGAGGTGTTTCTTCCT TCTGATACTTGCTGTTTCTTTCATCCGTTTCTTTCTTCATTCTAATTCAGATTATGAGTCCATAAAGTCTTTAGTCTAAT GATTATGAAATTCCCATTGCCATCCGGAAAGCTGAAGGCTTAGGTACCAAACATCCTATTTCTAGTTTTAGGTCACTTAA GAATGTATCCGCTACTTTTAATTCTTGCTCTTCAGAACAGACAGAATCATAAATTCCAAAGGATATCCATGATGCTTTAA AGGTTCCTAAGTGGAAGCAAACTGTCTTAGAAGATATGAAGGCTCTTGAAAAAATAATCAAATATAGGAGGTGGTGGAAT TTCCTAAAGGAAAGATAGCCTTGGGATTCATAACTAAGTACAAGTCAAGTGGATCAATTGAAAGGTATGATGAAGTCCAT GGGTTCCAAAGGCTTCACTTAGACCTGTGGAGTTGATTACTTGTAGACTTTTGCGCACATGTTAAATTTTTAATCATAAA GAATCATATTATCCTTAGCTGC
CDS sequence (LotjaGi5g1v0241600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTGAAGCGTTGCACATTTCAATCCCAATCCACGTTCCTCCCCGCTCCAAATCTCATCCTCTCGCGCCTCCTCAG CTCCACCCTCAACGACGGCGACGTACACAGAGTCATGACCATCATCACCACCACTTCCTCGCCGGAAAACCTGCGACAAT CCCTCAAATCAAGCGGCGTTTTCCTCTCAAACGAACTCATCGACCAAGTCCTCAAAAGGGTCCGTTTCAGCCACGCAAAC CCCTCCCAAACCCTCGAGTTCTACCGCTACACTGGCCGCAGAAAAGGGTTCTTCCACACCGCGTTTTCCCTCGACACCAT GCTCTACATTCTCGGGAGAAGCCGCATGTTCAACCATATCTGGGACCTTCTCATCGAAGCGCGGTGGAAAGACCAAACTC TCATCACCCCGCGCACTGTCATGGTTGTCTTGGCCAGAACAGCGAAGGTTTGTTCTGTTAGACAAACTGTGGAGTTTTTC AGAAGGTTCAAGAAGCTGGTTCCTGATTTTGATACTAACTGTTTCAATGCATTGTTGAGAACTTTGTGTCAGGAGAAGAG CATGACGGATGCTAGAAACGTGTATCATAGTTTGAAGCATCAGTTTCGGCCGAATTTGCAAACGTTTAACATTCTGCTTT CTGGGTGGAAGACCCCAGAGGACGCTGAGGTGTTCTTCAAGGAGATGAGGGAGATGGGGGTGACGCCTGATGTTGTTACG TACAATAGTTTGGTGGATGTTTACTGCAAGGGTAGGGAGTTGGAGAAGGCCTATAAGGTGCTCGATGAAATGCGTGAACG GGATTTGTCGCCGGATGTGATTACATACACGAGTATAATTGGTGGGTTGGGGTTGGTTGGTCAGCCGGATAAAGCTAGAG ATGTTTTGAAGGAGATGAAGGAGTATGGCTGTTACCCTGATGTCCCGGCGTACAATGCTGCCATTAGGAACTTTTGCATT GCGAAGAGGCTTCGTGAGGCTTATGATTTGGTGGATGAGATGACGAGCAAAGGTTTAAATCCGAATGCTACTACTTACAA TTTGTTTTTCAGGATTTTTTACTGGTCTAATGATTTACAGAGCTCCTGGAACATGTACCATAGGATGATGGGGTTGGGAT GCCATCCGAATACACAGTCTTGTATGTTCTTAATAAGGCTGTTTAAGAAGCAGGAAAAGGTGGAGATGGCGCTGCAGCTA TGGGGTGACATGGTGGAAAAGGGTTTTGGCTCCTATACTTTGGTTTCTGATGTGCTGTTTGACTTGCTTTGTGATATGGG GAAGTTGGGAGAAGCAGAGAAGTGTTTCTTGGAGATGATTGAGAAGGGGCAGAAGCCGAGTAATGTTTCATTTAGGAGAA TCAAGGTTCTCATGGAACTAGCTAATAGACATGAGGCCCTTCAGAACTTGACACAGAAAATGGCCGTGTTTGGGCGACCA GTCCAAGTTCGTGAAAGTAGACCAGTCCAAGTTCATGAAAGTAGAGAGAGCGCGATTGATACTTAA
Protein sequence (LotjaGi5g1v0241600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLKRCTFQSQSTFLPAPNLILSRLLSSTLNDGDVHRVMTIITTTSSPENLRQSLKSSGVFLSNELIDQVLKRVRFSHAN PSQTLEFYRYTGRRKGFFHTAFSLDTMLYILGRSRMFNHIWDLLIEARWKDQTLITPRTVMVVLARTAKVCSVRQTVEFF RRFKKLVPDFDTNCFNALLRTLCQEKSMTDARNVYHSLKHQFRPNLQTFNILLSGWKTPEDAEVFFKEMREMGVTPDVVT YNSLVDVYCKGRELEKAYKVLDEMRERDLSPDVITYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVPAYNAAIRNFCI AKRLREAYDLVDEMTSKGLNPNATTYNLFFRIFYWSNDLQSSWNMYHRMMGLGCHPNTQSCMFLIRLFKKQEKVEMALQL WGDMVEKGFGSYTLVSDVLFDLLCDMGKLGEAEKCFLEMIEKGQKPSNVSFRRIKVLMELANRHEALQNLTQKMAVFGRP VQVRESRPVQVHESRESAIDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 215 | 150 | 1.9E-68 | – | |
| SUPERFAMILY | 160 | 472 | 313 | 3.26E-5 | ||
| Pfam | 170 | 214 | 45 | 0.0053 | ||
| ProSiteProfiles | 171 | 201 | 31 | 7.64 | ||
| ProSiteProfiles | 202 | 236 | 35 | 5.086 | ||
| Gene3D | 218 | 319 | 102 | 1.5E-32 | ||
| PANTHER | 221 | 462 | 242 | 1.9E-68 | – | |
| Pfam | 236 | 283 | 48 | 1.1E-16 | ||
| ProSiteProfiles | 237 | 271 | 35 | 13.877 | ||
| TIGRFAM | 239 | 273 | 35 | 2.1E-11 | ||
| ProSiteProfiles | 272 | 306 | 35 | 12.288 | ||
| TIGRFAM | 274 | 308 | 35 | 4.7E-10 | ||
| SUPERFAMILY | 282 | 472 | 191 | 8.63E-6 | – | |
| Pfam | 306 | 351 | 46 | 8.8E-11 | ||
| ProSiteProfiles | 307 | 341 | 35 | 11.378 | ||
| TIGRFAM | 310 | 343 | 34 | 2.0E-6 | ||
| Gene3D | 321 | 497 | 177 | 1.6E-23 | ||
| ProSiteProfiles | 342 | 376 | 35 | 8.846 | ||
| ProSiteProfiles | 377 | 411 | 35 | 8.451 | ||
| Pfam | 384 | 409 | 26 | 0.021 | ||
| ProSiteProfiles | 412 | 446 | 35 | 8.616 | ||
| Pfam | 419 | 443 | 25 | 0.0056 | ||
| TIGRFAM | 419 | 447 | 29 | 0.0014 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0241600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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