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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241900 |
| Transcript ID | LotjaGi5g1v0241900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G52640.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial; TrEMBL-Plants: tr|A0A0B2QVF7|A0A0B2QVF7_GLYSO Pentatricopeptide repeat-containing protein, mitochondrial; Found in the gene: LotjaGi5g1v0241900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55021092..55024019) extracted from Lotus japonicus Gifu genome v1.2.
AATTTTCCTTGCAATTTACCCTTAAGGGCTTAAATTTAGTTCTTCTTGCTTGACCCATCGATGGACAATTTTTCACTAGA TCCATGTTAGATAACATTACTGCTTGGCTTCACTCTTTAACAGTGGCCCTCTCGTTTTCTCTCTCGAGAACTAAACACGC TCACTCAAATCTCTTTCACCTCCTCCATGAGCTGAAGCTTCAGGTAAGAAAATCCTTACCCACAACCTTTTCTTCTGTTC TCCCCCAGTTTTATCGTAGTTGCATTGTTCACTGCTTCAAAAAAAAGAGTTTAAAAATTAGATTTCAATTTCCAAACTAA TTCTATGGTTCAGTAGAAATTCGGTTTCATGACTTTCATCTATATGAATTTGATTGGAATCCCCCAATTATTTGACATTT TAAGCCCAAAATCCAAAGTATTTGACAATAATTTTTCCTATACATAATCTCAAGGGTTGGTTTAGTGGAGGATGACAGAG TCTAATACCTGCCGCTGGCCTGCAAGTTCAAACCCCACTACTCCCCTTGGGCCCGGGTCAGGTAAATATAAGTATTTTGT AAGTCTTATTTCAGCCCGACAGCTTTTTTTGCCTTGGACTGAATTGAGGCACCATCCCCTCATCCTAAATTTTTCTTAAC CAAAAAATAATAATTTTTCCTAAATCAGAGCTAGAACCAAATTAAAAGTATAGCTTTTAGCCTTTTACTTGTCTGGGCTT GTATAATAGGCCTGTGGTAGTTGATTAGCAATTCATGGTTTTATTTACGTTGAGGCTGGGTTATGTTCTTTACCCTATTG TGCTACTTTTTGTAGGATCTTATTCATATTGATATTCTTCAATTAATTGATATTACAAGCCATCCTTAGCTGCTAAGTGC CATATGTCTCTGGAATTTATGTTTTAGATGTTGAATATAGGTTGAAACTGACTTGTTCTATGATAAATGTGTCTTCCATA GTTGCAATAAAATAAAATGTCTTTTACTTTGATGTCTACACAGGGAAGAATACAATTGGAAAATGTTGGACTGAAGGTGA TTTAACCAAGTGCTGATTCCCTGTGCTTGAATTGATATCTTACTGTCACAATGTCCAAAACCAAAATGGCTATGCAGTCA CTCTTCTCTAAATATAAAGTATTAACCTCTTCCTGTTGCCCTCTTGTCCAACACAAGCACTACTGCTATCCCTTTCACTC TTTCCCAGCCCCACAAGTGTCCGGCCTGTTATTACCGGACCTTGTGAATGAGATATCTCGTGTAGTCAGTGATCACCGGT TCCCTCACCATGATCTAGAACTCTCTCTCAATCCATTTTCAGCACAAATGTCCACCGATTTAGTTGAACAGGTTTTGAAA AGGTGCAATAAGCTTGGCTTCTCAGCCCACAGATTCTTTCTTTGGGCTAAATCAATTCCAGGTTTCCAGCATAGTGCTGA GAGCTTCAGCATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCTATACTCTGGGATTTTCTTGTAGAAATGAGAG AGTCTTCTTGTTGTGAAATCAAGAATGATATCTTCTGGCTCATTTTCAAGGCATATAGCCGGGCTAATTTACCGGATGGC GCAATCCGGTCTTTCATTAGAATGGATGAATTTGGAATTAACCCAACTATTCATGATTTTGAGAAGCTTTTGTACTTTTT ATGTAAAAGGAAGCATGTCAAACAGGCTCAGAATTTTTTTGATCAAGCTAAGAGTCGTTTCATGTTAACTGCTAAGACTT ACAGCATTTTGATAAGTGGATGGGGTGAGATTGGTGATTCAGGGAAGGCACATGAGCTGTTTCAATCAATGCTTGAGCAA GGATGTCCTGTGGATTTGCTTGCATATAATAGAATTTTAGACGCCCTCTGCAAAGGAGGTCGTGTGGATGAAGCTACAAA TATTTTTCATGATATGCTGTCAAAAGGAGTTGAACCAGATGCTTTTACTTACTCAATATTCATTCACGCGTATTGTGATG CAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAGACTTTTGCCAAATGTGTTTACATACAAT TGTGTTATAAAGCGGCTTTGTAAGAATGAAAAAGTGGAAGAAGCTTATGAATTGTTGGATGAAATGATTTCAAGAGGAGT AAAACCAGACACTTGGAGTTATAATGCAATACAAACTTACCATTGTGATCATTGTGAGGTCAATAGGGCTCTAAGGTTAA TGTCTAGAATGGAAAAGGATAATTGTTTTCCTGATCATCATACATATAACATGGTGCTCAAATTGCTGATTAGGATAGGA AGGTTTGATAAGGCAACTGAAGTTTGGGAGGACATGGGGCATAAAAATATTTATCCATCTGTCTCAACATATTCTGTCAT GATTCATGGTTTTTGTAAAAAGAAGGGAAAGGTAGAGGAGGCATGTAAGTACTTTGAGATGATGATTGATGAAGGAATAC CACCTTATGTTACTACGGTTGAAATGCTGCGGAATCGCCTCTTGCGTTTTGGCCTTTTGGATCGCATTGAAATACTTGCT GATAAGATGAGGCAGGGAACTTCATGTTCAATCCATGAATTGGCAAATATTATGAGTGGTGTTACAGTTGCTCATAATGC TTTAAGGCATGATGAGATGGACTCCGAAAGTGACTGAAGAAGTGGCTAATAAGTGTACCCGCCTATTTTATCATAGCTGA GCGCACCATGAAGATTCTATTTCTTTGGGGGTAATGGTTAACTGATGTGTTTTACAGTGCTGGATATGACAAATTATTCT TATACCATGAAGATATTGATGTATGTGTATCAAGTATCAGTGTAGCAACTAGTAGTAAGGTAACTTATTGCTCTTTAGCT GCAAAATAGCTAGAAAACTTTTAAATTTGGCTTAACGGCCATGGCGGC
CDS sequence (LotjaGi5g1v0241900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAAAACCAAAATGGCTATGCAGTCACTCTTCTCTAAATATAAAGTATTAACCTCTTCCTGTTGCCCTCTTGTCCA ACACAAGCACTACTGCTATCCCTTTCACTCTTTCCCAGCCCCACAAGTGTCCGGCCTGTTATTACCGGACCTTGTGAATG AGATATCTCGTGTAGTCAGTGATCACCGGTTCCCTCACCATGATCTAGAACTCTCTCTCAATCCATTTTCAGCACAAATG TCCACCGATTTAGTTGAACAGGTTTTGAAAAGGTGCAATAAGCTTGGCTTCTCAGCCCACAGATTCTTTCTTTGGGCTAA ATCAATTCCAGGTTTCCAGCATAGTGCTGAGAGCTTCAGCATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCTA TACTCTGGGATTTTCTTGTAGAAATGAGAGAGTCTTCTTGTTGTGAAATCAAGAATGATATCTTCTGGCTCATTTTCAAG GCATATAGCCGGGCTAATTTACCGGATGGCGCAATCCGGTCTTTCATTAGAATGGATGAATTTGGAATTAACCCAACTAT TCATGATTTTGAGAAGCTTTTGTACTTTTTATGTAAAAGGAAGCATGTCAAACAGGCTCAGAATTTTTTTGATCAAGCTA AGAGTCGTTTCATGTTAACTGCTAAGACTTACAGCATTTTGATAAGTGGATGGGGTGAGATTGGTGATTCAGGGAAGGCA CATGAGCTGTTTCAATCAATGCTTGAGCAAGGATGTCCTGTGGATTTGCTTGCATATAATAGAATTTTAGACGCCCTCTG CAAAGGAGGTCGTGTGGATGAAGCTACAAATATTTTTCATGATATGCTGTCAAAAGGAGTTGAACCAGATGCTTTTACTT ACTCAATATTCATTCACGCGTATTGTGATGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGT AGACTTTTGCCAAATGTGTTTACATACAATTGTGTTATAAAGCGGCTTTGTAAGAATGAAAAAGTGGAAGAAGCTTATGA ATTGTTGGATGAAATGATTTCAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAACTTACCATTGTGATC ATTGTGAGGTCAATAGGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAATTGTTTTCCTGATCATCATACATATAAC ATGGTGCTCAAATTGCTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGGACATGGGGCATAAAAATAT TTATCCATCTGTCTCAACATATTCTGTCATGATTCATGGTTTTTGTAAAAAGAAGGGAAAGGTAGAGGAGGCATGTAAGT ACTTTGAGATGATGATTGATGAAGGAATACCACCTTATGTTACTACGGTTGAAATGCTGCGGAATCGCCTCTTGCGTTTT GGCCTTTTGGATCGCATTGAAATACTTGCTGATAAGATGAGGCAGGGAACTTCATGTTCAATCCATGAATTGGCAAATAT TATGAGTGGTGTTACAGTTGCTCATAATGCTTTAAGGCATGATGAGATGGACTCCGAAAGTGACTGA
Protein sequence (LotjaGi5g1v0241900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKTKMAMQSLFSKYKVLTSSCCPLVQHKHYCYPFHSFPAPQVSGLLLPDLVNEISRVVSDHRFPHHDLELSLNPFSAQM STDLVEQVLKRCNKLGFSAHRFFLWAKSIPGFQHSAESFSILVEILGSCKQFAILWDFLVEMRESSCCEIKNDIFWLIFK AYSRANLPDGAIRSFIRMDEFGINPTIHDFEKLLYFLCKRKHVKQAQNFFDQAKSRFMLTAKTYSILISGWGEIGDSGKA HELFQSMLEQGCPVDLLAYNRILDALCKGGRVDEATNIFHDMLSKGVEPDAFTYSIFIHAYCDANDIHSAFRVLDKMRRC RLLPNVFTYNCVIKRLCKNEKVEEAYELLDEMISRGVKPDTWSYNAIQTYHCDHCEVNRALRLMSRMEKDNCFPDHHTYN MVLKLLIRIGRFDKATEVWEDMGHKNIYPSVSTYSVMIHGFCKKKGKVEEACKYFEMMIDEGIPPYVTTVEMLRNRLLRF GLLDRIEILADKMRQGTSCSIHELANIMSGVTVAHNALRHDEMDSESD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 17 | 27 | 11 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 528 | 496 | - | – | |
| Gene3D | 70 | 201 | 132 | 3.3E-10 | ||
| PANTHER | 110 | 252 | 143 | 2.7E-94 | – | |
| PANTHER | 110 | 252 | 143 | 2.7E-94 | – | |
| ProSiteProfiles | 115 | 149 | 35 | 6.511 | ||
| ProSiteProfiles | 151 | 185 | 35 | 7.706 | ||
| Pfam | 159 | 183 | 25 | 1.3 | ||
| PANTHER | 178 | 289 | 112 | 2.7E-94 | – | |
| PANTHER | 178 | 289 | 112 | 2.7E-94 | – | |
| ProSiteProfiles | 186 | 216 | 31 | 5.831 | ||
| SUPERFAMILY | 196 | 456 | 261 | 6.92E-6 | ||
| Gene3D | 212 | 284 | 73 | 1.7E-14 | ||
| ProSiteProfiles | 220 | 254 | 35 | 10.49 | ||
| TIGRFAM | 223 | 255 | 33 | 3.0E-7 | ||
| Pfam | 223 | 252 | 30 | 1.5E-4 | ||
| PANTHER | 254 | 434 | 181 | 2.7E-94 | – | |
| PANTHER | 254 | 434 | 181 | 2.7E-94 | – | |
| ProSiteProfiles | 255 | 289 | 35 | 13.439 | ||
| Pfam | 256 | 303 | 48 | 4.2E-16 | ||
| TIGRFAM | 258 | 291 | 34 | 2.5E-9 | ||
| Gene3D | 285 | 354 | 70 | 4.5E-21 | ||
| ProSiteProfiles | 290 | 324 | 35 | 11.586 | ||
| TIGRFAM | 292 | 326 | 35 | 1.1E-7 | ||
| PANTHER | 323 | 476 | 154 | 2.7E-94 | – | |
| PANTHER | 323 | 476 | 154 | 2.7E-94 | – | |
| Pfam | 324 | 366 | 43 | 9.3E-16 | ||
| ProSiteProfiles | 325 | 359 | 35 | 14.074 | ||
| TIGRFAM | 327 | 361 | 35 | 2.0E-11 | ||
| Gene3D | 355 | 424 | 70 | 7.3E-15 | ||
| ProSiteProfiles | 360 | 394 | 35 | 9.054 | ||
| Pfam | 394 | 443 | 50 | 3.2E-15 | ||
| ProSiteProfiles | 395 | 429 | 35 | 11.4 | ||
| TIGRFAM | 397 | 430 | 34 | 1.3E-6 | ||
| Gene3D | 425 | 497 | 73 | 3.7E-13 | ||
| ProSiteProfiles | 430 | 465 | 36 | 13.285 | ||
| TIGRFAM | 433 | 465 | 33 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0241900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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