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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0242600 |
| Transcript ID | LotjaGi5g1v0242600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|I1JQU1|I1JQU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55116979..55122606) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTACAGAGAGGAAGCGGAAGGTGAGTTTGTTTGATGTGGTGGACGACTCCGCCGTCAAGATGGCCAAAACCAACGG CGCCACCAGCCTCATAAACCACTGGACCGGGAAACCTTACTCCCAGCGGTACTACGACATTCTCGAGAAACGGAAAACCC TCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGACTCTCATTCTCGTTGGTGAAACTGGT AGTGGTAAAACCACACAGGTCAGTTTCTCTACTCCAAAACCCTCTCTCAAAATTGAAATTGTAGGGACTCGATGAATTCT ACTTGTTTTTGTGTGTAGGTCACTGAATTTTATGGTTTTGTGTTTTTGTTATTGGTGACAGATTCCTCAGTTTGTTCTGG AAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGATGGTTGCATGCACTCAGCCGCGTAGAGTGGCTGCGATG TCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTGGAGAAGAGGTTGGTTATAGCATCAGATTTGAGGATTG CAGTAGTTCCAAGACGGTTTTGAAGTATGTTTTGTTTTTCTGTTAAATTACTACTTTCTTTAGTTAATTGAATTTAGAGT TTCGTGCAGTATTTTGGCCCCGTTTGGAAGAGCTTATTTGAACTTATCTGATAGCTTAAGCTCTTATGTAAGTGTATGGC AGAGCTTATGCAAACAGGCGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAAGATAGCTTATGAAAAAGAGCT TATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAAAATTTTAAAATAGCTTATGAATAAGCACTTATGACCATAA GTGCTTAATTAAGCTGTTTTCCCAAACGGGGCCTTTATATAATGTTTTCCCCCCCTATGGGTCTCAATTGGGATGCGTTT TCTTTGCTCCCTGCCACAGGTATCTTACAGATGGTATGCTTTTGAGAGAAGCAATGGCGGATCCGCTTTTGGACCGATAC AAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTTGGCCACGGATGTGCTGTTTGGTCTTCTTAAGGAAGTACTTAA AAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTCCGGGGCGC CTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAAATTTTCTACACTCAGGAGCCAGAAAGAGATTACTTGGAGGCG GCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCCTCCTGGAGATATACTTGTTTTCCTTACTGGGGAGGAAGAGAT AGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAAATTTGGGAGACCAGGTGGGACCTTTGAAAGTGGTACCCTTGT ACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTTGAAGCAGCTCCACCTCCAGTTAAAGAGGGAGGGCCTCCTGGA AGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGTATAGTCTATGTTATTGACCCTGGGTT TGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACC AGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTAGACTTTACACTGAAAGAAGTTTCAATAATGATCTT CAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCTTGCGAACACAGTTCTTACCTTAAAGAAACTTGGTATAGATGA TTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCGAGACCTTAATGCGCGCTTTGGAAGTATTGAATTACTTGGGTG CACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCCATTGGATCCTCAGATGTCAAAGATG CTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGATTCTTTCAATTTCAGCCATGCTATCAGGTATGATTCTATTTTT AATTGCTTTTTTTGTGTCTGTCCTGAGTCTCACCCTAATGTTAAGGGAATGTTGTTGTGTTGGGCTCCACTTTGATATGG ATGCCCAGCATTTTTACATGTGCACAGTCTATATTGTGCATACGAGGGGATGTTTGACTGCTTACATGTGTGCTAAGTTG CACATGAATGCGGTTCATTGAGTATGTCCTGTTAGTTAGTCATCAGCAACTGTCTTCTCTGGGTTTCATGCCCCCGGTTG GCATGTACCATAGGATTCTAAGTAAGTGCTGATGCAGATAGTTGCAGTTTCTCAGTATTCTCTCATGAAGAAATTGGTGT CGTCTCGCCTCTATGCATCTGCTGACCTTCCGTGGACCTCCTCTGTGATAAATAATTTCTTTCTCTAGTACCCAATTGCT TTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTCACA CTCTTGAATGTTTACCATGCCTACAAGCAAAACAGTGAGTGCTCATTTCTGCTACTTTGTTTATTCCCCAATTTGTTGCT ATTTATTTTTGTCTAATGTCAAGTTCGTTAATTGTACGTGAATGGTTTTTCAGATGAGGATCCATCTTGGTGCTATGATA ACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGTGCGTATCATGACTCGGTATAACCTG AAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGGCAATGCTAGCAGGATATTTCATGCA GGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTTTGTTGAGATGCACTGCAATTTGTGC TTATCTTCCTTCCTTTTCCATTTTGTACTACAAAAATAGCTATTGTGTAGGCTGAAGGATTGCATTTATATTAATTATTA TATTCTGGTGTAGGTGGTGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCCCGAGTGGGTAATCTATAATGAATATG TCCTTACCAGTCGGAACTTCATTCGTACTGTGACAGACATACGCGGTGAATGGTAAGATTTTATTCATTTAGTATTTTGA TGGCTTTCCAAGCAAGGTTTGAGTTTGACAACTTGAGCTGGTAAAAAGTAAATATTTTTCATCCATGATATTTGATGGGA AACTTGTATTCAGTAAAAGTGCTATCAGTAAATATATAGTTTTCTGGCATAAATTTTGATGCAGGAGCAAATTAATTATG AATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTCTGTTTTTAATTAAGTTTAGGATCAAT TTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAGTTAGGATTTTCATTATTTTTAGTTTC ATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCAGTTTATTATTGATAATCAAATTTGAG ATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCTTGCTAACCCTTACTTTCTGGTGGATT CCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTGCATCAAGTGGCATCAGAGCAGGCTT TCTCCTGTCTCTTTTCTTTGCTTGATCAACCATGGAAGATCAACCAATGACCAAAGCAGATCTGAAGGATGTTACCGCGG CTCTTACCGCGGCCCTAACTGCTATTACGCAACATATGACACAACAAATGATACAACATATGGCGACGTTCACGGCGGCT TTAACGGCGCAGATCAACAATACCAACAACGGTAACCGGCGACGAGACAGGAGAGGGAAACCACATAGGTTTCCGCGCGA CAACAACAACAATCGTTCCGCTATATCTTTACCTTCCCAATCTTTGCATTCACCATCCGTATCTCATTCTTATTACCAAG TTCAGTACCCAACCTCTAAAACCACCGAAACTCCACACCCCCAACCTGCTACATCCAACCTTATCAATCCTTACCCCAAC ATATCACCGACTGCAAATCCAATTTCCTTGCCACAACCCTTACCAAAACCTATTTCAAATTCATGTCCATCTGCAAGACC TATGTACGCAACTTCTTCGGAATCAGATTCTCAAATTTCATTTGCGCCATCCTCTATTGTTGACATGGAAGATGAGGCAA AAATGTTGGTGGATGATTTGGTACCATCTGCGCAGAAACCAAGGGAAGTAGACGTTACAAAAGATGAAAACTTTGGCCAC ATGAAGTCCTCAGAGTTTCTTACATTCAAATCTTCAACTCCGCTTCCTACAGGAGTACAAAGCATTATCCCCTATAATTC AAAAGCCCCCAATGTTATTTTGGAGAAACTGGAGAGGTTAGAATTGCTTAAAGATAGTGATGGTGCTCATGAGATATTTG TTGAAGGAGATGATGAAAAAATAGTTCGAAGTTGTAGTAATGGTGTTGTTCGTTTGGTTGGTTTGCATATTGAAGCCTTT TATTTAGAAGAGAACTTGTGGTCAAGTTCTTTGGAAGAAGAGGAGAATGTAAAGACATCAGAGGCACTTGGTTGTGACGC ATTCATGCGGACATCAGATAGTTCTACACAAATTTGGGTATTTGACCCTGGCATTCTTAATGTCGTTCATGAGTTCCGAA CAGAGGCCTCCTTTGTTTTTTTTTGTTACGTTAGAACTCGGGGTCGAGTTCTTCACAAGAAGAGGAGCCTGATGCAGGAG CAAATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTCTGTTTTTAATTAA GTTTAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAGTTAGGATTTTCAT TATTTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCAGTTTATTATTGAT AATCAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCTTGCTAACCCTTAC TTTCTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTGCATCAAATTTAC TAAAACATATTGTATATTCCTATCATGAATTAATAACACTTGAATAGATGATTTATGTACAGTGGTAAACACAACTTATT ATTTTGAATTCCACTCTTTGATTTTAGCTGGGAGAGAGTTGCAAGAATGATTCTCAAGTATAATGTTGTGGACCTTTCTG TACTAATTTTGGCTGATGTTATTTAGATGTATTAACTTTATGATGTATTATTATCCTGCAGGATAGTTGATATAGCACCA CATTACTATGATCTGTCTAATTTTCCACAATGTGAAGCAAGGCGTGTTCTTGAGAAGCTTTACAAGAAGCGAGAGAAGGA AAAAGAGGAATCTAGGGGTCGTAAATGA
CDS sequence (LotjaGi5g1v0242600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACAGAGAGGAAGCGGAAGGTGAGTTTGTTTGATGTGGTGGACGACTCCGCCGTCAAGATGGCCAAAACCAACGG CGCCACCAGCCTCATAAACCACTGGACCGGGAAACCTTACTCCCAGCGGTACTACGACATTCTCGAGAAACGGAAAACCC TCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGACTCTCATTCTCGTTGGTGAAACTGGT AGTGGTAAAACCACACAGATTCCTCAGTTTGTTCTGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGAT GGTTGCATGCACTCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTG GAGAAGAGGTTGGTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATCTTACAGATGGTATG CTTTTGAGAGAAGCAATGGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTT GGCCACGGATGTGCTGTTTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAA CACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAA ATTTTCTACACTCAGGAGCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCC TCCTGGAGATATACTTGTTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAA ATTTGGGAGACCAGGTGGGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTT GAAGCAGCTCCACCTCCAGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTC CTTGACAATTGATGGTATAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCG AGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAA TGTTTTAGACTTTACACTGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCT TGCGAACACAGTTCTTACCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCG AGACCTTAATGCGCGCTTTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAG ATTATGAGTGAATTTCCATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGAT TCTTTCAATTTCAGCCATGCTATCAGGTTTGACTGCTTACATGTGTGCTAAGTTGCACATGAATGCGGTTCATTGA
Protein sequence (LotjaGi5g1v0242600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTERKRKVSLFDVVDDSAVKMAKTNGATSLINHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETG SGKTTQIPQFVLEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGM LLREAMADPLLDRYKVIILDEAHERTLATDVLFGLLKEVLKNRRDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVE IFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPLKVVPLYSTLPPAMQQKIF EAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK CFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGE IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSGLTAYMCAKLHMNAVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 521 | 521 | 0.0 | – | |
| PANTHER | 1 | 521 | 521 | 0.0 | – | |
| Gene3D | 8 | 235 | 228 | 1.5E-88 | – | |
| CDD | 42 | 232 | 191 | 3.03787E-126 | – | |
| SUPERFAMILY | 51 | 515 | 465 | 1.98E-121 | ||
| SMART | 52 | 242 | 191 | 4.2E-33 | ||
| ProSiteProfiles | 64 | 233 | 170 | 22.015 | ||
| SMART | 69 | 242 | 174 | 0.0031 | ||
| Pfam | 70 | 214 | 145 | 7.0E-8 | ||
| Gene3D | 236 | 417 | 182 | 2.8E-73 | – | |
| CDD | 237 | 405 | 169 | 4.00566E-88 | – | |
| ProSiteProfiles | 258 | 438 | 181 | 16.395 | ||
| Pfam | 260 | 396 | 137 | 5.1E-11 | ||
| SMART | 279 | 397 | 119 | 1.5E-17 | ||
| Gene3D | 441 | 527 | 87 | 1.7E-30 | – | |
| SMART | 458 | 530 | 73 | 9.9E-17 | ||
| Pfam | 459 | 515 | 57 | 5.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi5g1v0242600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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