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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243600 |
| Transcript ID | LotjaGi5g1v0243600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G02370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; TrEMBL-Plants: tr|A0A151QRR1|A0A151QRR1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0243600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55231658..55235439) extracted from Lotus japonicus Gifu genome v1.2.
CACTTATACTAAAATCAGTTGCTTAATTATTTATACCAAATGGCATTCTACTTAACTTTAAAAATTAAAACTAAAAATAA AAAATCTCCCATCCCTGAAATATTGTGATTTGTGCGGTTTGTTAAACCCTAACAAAACCCTGCTATAGCACATTCTGCGA GAGGTAACAAATAGACAAGGCACCTGCATTAGCACATTCCGAGAGCAACGAAAATGAATCTCGTCCGTCTAATTTCCGGC CGAGGAAGGCTTCTCCGCCAGCTGTGCACGGGGGCTACGGAGGCCAATCGTCCGGCGAAGAAGCAAGGCCTTTATCAAAG GTTATCAGAGAAGGAAAAGACCGGATTGAGCGCGTCAGAGACGTTGAACCAGTACATGACAGAGGGCAGAGTCGCCGGAA AAAGCGAACTCATGCGTATCGTCAAGGAGCTCCGTAAGTATCGCAGGTTCCAGGATGCTCTTGAGGTATCAAAATCTTTG GCAACTTTTTTCTTTTTAAATTTAATTTCTATCTACATTGTTGTTCGATCCGTGAGCGGTGCATATGGAAAATCATTTAT TATACCGACTTAATGTAATCTCCGAGCCTCGAGGGATAGGATAAGGATACATTTGGAAACCAAATATAATTTCATTTCCA TTGCAGGTAATGGAGTGGATGGAGAAGAGGAATTCTAAGTTTCCGCGGACATATAATCATGCAGTGCATTTAGATCTTGT GTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTACTTTAATAGTCTTCCTCCTCCTGCCATGGACATGTACACATATG GTACTCTTTTGAATTGTTACTGTCAGGAACTAATGGCGGATAAGGCATTGGATCTGTTTGACAAGATGAATGAATTGGGT TATGTCACTTCTTTGAATTTCAACAATCTGATGACTCTGTTCATGAAGTTGGGTCAGCCACTGAAAGTGCATCAGCTGGT GGATGAGATGAAGCAGAGGAACATTCCCATGAGTGCATTCACGTATCATGCGTGGATGAATAGCTACGCCGCTTTGAATG ACCTAGATGAGGTTGAGAGGATCTTTGAGAAGATGAAAGTAGAAGATGAAGACAAAATTGAGTGGCAGACTTATAGCAAC CTTGCTGTTATTTATGTGAAGGCTGAACAGTTTGAGAAAGCAGAGTCGATGCTTAGGAAGCTGGAACGAAAGGTGAAGCC GCGGCCGCGTGAAGCATACCTTGCTGCTATCTATGTGAAGGATAACAAATTTAAGAAAGCAGGGGAGATGTTTCAGAAGC TGGAACAAAAGGTGAGGCCGCGGCCGCGCGAAGCATACCACTGCTTAATTAGTCTTTATGCAAAAACTGGTAATCTTGAG AAGGTTTATAAGTTATGGTATTTCCTCAAGTCAGTCTCTCCAGTGATCAATGAAAGCTATCTTATCATGATTTGTGCTCT TAAAAGGCTTAATGATATGGAGGGCTTAATCAAGTGCTTTAAGGAGTGGGAATCTAGGTGCGAACGTTATGATTTGAGGT TGGTTAGTACTGTAATAAGTGCTTACTTGAGTGAGGACATGGGTGAAGAAGCTGCATTGGTGTTTAAGGAGGCTATGAAG AAGAGCAAAGGACCTTTCTTTAAGATTAGGGAAAGGTTCATGGTATTCTTCTTGGAGAAACGTCAATTGGATGGTGCTGT TAGCCACTTAGAGGCGGCGCTTTCGGAAGTCGTGGGTGATGAATGGCGTCCTTTCCCACATGTTGTGAGGGCCTTTGTAA AGTATTATAAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCAAGACTCACAACTTTGATGATTCC TGGCTTCAGAGTTCCATTGCAGCATCTGAGTCATCTCCTGAAAATGAAGATTCTATTGTCAATGGTGCACTTCAGAACTT GCAAGATGATGTTCACTGTGAATAAGAAAGAACTCTGGTGGGATTATTTGTAAGAATCAGCTAGAAGACCCAATTATTTT TTCAAATTCTATTTAGCATGCTGTACTTTTTTTCTATACTATTTTGAGTCACTTTTCACTTTAGGAATAGTATTGGAAAT TTGCACTCTCCAATGTGACAATTTCTGCAAATCTTTATACTAGGCAATGTTTAACCGACTTGGATCCTTTACCGTTGCAA AATAACTGCAGGGTGTGTGCAGTTGGCCATTAAATTAAAACTGAATAGAATTTAATTTTAAAATATAAACTTGTCATCTA ATAATATAAATCAAAGATCATACTCGTGTAGCTTATCCTAATCCATAATTTACAGCTAGGCTAAACTAAACCAGGGCAGA GCAATTTTTCTTGAACTATAGATTTACCTTTGAAACTGATCAGTTGATACTTTTTTTTAAAATGGGTTATCACTATAACT TACCATGAAGACATACTGTTAAAACAACTCCACGGTTTTGGATTTAGAGTATGTCAAATACCTTCTAACTTTTAAGACAT TACTTCTTCTGATGATCATTTATATATGCATTTTCATAAGAGTGCAACTTAGTAATCTCTTTTTTTTAAGTAGTTGCCCT TATGTGGATTCTTATGAATATTGAACGGTAATGTTGTTCAAAAGTGAGTTTGGTGACGTGTGACAGGTGCGAATATAGAG GTCTCTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTCTAGGAGGAGGCAAGATTGCTGCTATGA TGGTTGATGAGTTTGATAAGATCATCTTTATTTTATTTTTTTGAATTCTTCCACTGATGCCTGTAACAGTCTAGAGAACT TTATTAGAGATCCTAAAATTGTTTTAGTTTTGAAGCAAGGGTTACTGCACTGACTTATCAATGCAATGTCAATTCTGTAG ACCTACCAGATGGAACCTCACGCAGTAGTCGGGTGATCACCTGTACTTTTCTCTGTTTGATCTTTATAATCCAGTAATAT TCAATGTGATGTGTTTACACAATCTTTTAGGTGTATGTGGAAAGATGCCTGTATCTAAAAGAAAGCAAGTGTGTTGGTAT TTGCACTAACACCTGTAAGTTTCCAACACAGGTTAGTGATTCTTCAAAATACCATAAGAGCTAAAATTACCGTGATTGCT TTGAAGTTCTTGCATTCTCTGGATGATTGCATCTGACTCTATTTACAATGTAGGCCTTCTTCAGGGATTATATGGGAGTG CCATTACTTATGGAGCTGTCAGGTGATTGAGTATTGTAACCTTTTTACAATTGATTCTCAATTTGGAGAAGTTCATGTGA GTAGGTTCTGCTATTGATTTTGAAGAAAATAAGTTGATTCAAACATGCTATTAAAATTGCAGTTCAAATTTGGAGTTCTT CCCCCACTTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCAACGAAGAATGGTCGCCAGAAAAACAGATA TTACTGCATGCCCCAAGACATGAATACATTTTTCTTGGGCTTAAGAGTTTTGGGATCATTGTGCAATTTCCAAATCCTCT TGCACATTCTGGGAGTGTCTTTGAAAATGAAACTGAAGCTTGTGTTTTCTATACAGATAATTCATTTTTCACTGAGTTCA TATATGCAAATTTTAATACAACTCATCCTTTGTAAATAGGATGGTTAATATTTTTGACTTGTTTGTATATTATGAATGTA TTTCCCGAGTGAATACATTGATATTTAGTCACCTTGTTTGCGACATTGTAAGATTATTACATAGCTACTAAAATAGTTAC TCTTTCCCTGGTTAAAGACAAC
CDS sequence (LotjaGi5g1v0243600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTCGTCCGTCTAATTTCCGGCCGAGGAAGGCTTCTCCGCCAGCTGTGCACGGGGGCTACGGAGGCCAATCGTCC GGCGAAGAAGCAAGGCCTTTATCAAAGGTTATCAGAGAAGGAAAAGACCGGATTGAGCGCGTCAGAGACGTTGAACCAGT ACATGACAGAGGGCAGAGTCGCCGGAAAAAGCGAACTCATGCGTATCGTCAAGGAGCTCCGTAAGTATCGCAGGTTCCAG GATGCTCTTGAGGTAATGGAGTGGATGGAGAAGAGGAATTCTAAGTTTCCGCGGACATATAATCATGCAGTGCATTTAGA TCTTGTGTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTACTTTAATAGTCTTCCTCCTCCTGCCATGGACATGTACA CATATGGTACTCTTTTGAATTGTTACTGTCAGGAACTAATGGCGGATAAGGCATTGGATCTGTTTGACAAGATGAATGAA TTGGGTTATGTCACTTCTTTGAATTTCAACAATCTGATGACTCTGTTCATGAAGTTGGGTCAGCCACTGAAAGTGCATCA GCTGGTGGATGAGATGAAGCAGAGGAACATTCCCATGAGTGCATTCACGTATCATGCGTGGATGAATAGCTACGCCGCTT TGAATGACCTAGATGAGGTTGAGAGGATCTTTGAGAAGATGAAAGTAGAAGATGAAGACAAAATTGAGTGGCAGACTTAT AGCAACCTTGCTGTTATTTATGTGAAGGCTGAACAGTTTGAGAAAGCAGAGTCGATGCTTAGGAAGCTGGAACGAAAGGT GAAGCCGCGGCCGCGTGAAGCATACCTTGCTGCTATCTATGTGAAGGATAACAAATTTAAGAAAGCAGGGGAGATGTTTC AGAAGCTGGAACAAAAGGTGAGGCCGCGGCCGCGCGAAGCATACCACTGCTTAATTAGTCTTTATGCAAAAACTGGTAAT CTTGAGAAGGTTTATAAGTTATGGTATTTCCTCAAGTCAGTCTCTCCAGTGATCAATGAAAGCTATCTTATCATGATTTG TGCTCTTAAAAGGCTTAATGATATGGAGGGCTTAATCAAGTGCTTTAAGGAGTGGGAATCTAGGTGCGAACGTTATGATT TGAGGTTGGTTAGTACTGTAATAAGTGCTTACTTGAGTGAGGACATGGGTGAAGAAGCTGCATTGGTGTTTAAGGAGGCT ATGAAGAAGAGCAAAGGACCTTTCTTTAAGATTAGGGAAAGGTTCATGGTATTCTTCTTGGAGAAACGTCAATTGGATGG TGCTGTTAGCCACTTAGAGGCGGCGCTTTCGGAAGTCGTGGGTGATGAATGGCGTCCTTTCCCACATGTTGTGAGGGCCT TTGTAAAGTATTATAAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCAAGACTCACAACTTTGAT GATTCCTGGCTTCAGAGTTCCATTGCAGCATCTGAGTCATCTCCTGAAAATGAAGATTCTATTGTCAATGGTGCACTTCA GAACTTGCAAGATGATGTTCACTGTGAATAA
Protein sequence (LotjaGi5g1v0243600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLVRLISGRGRLLRQLCTGATEANRPAKKQGLYQRLSEKEKTGLSASETLNQYMTEGRVAGKSELMRIVKELRKYRRFQ DALEVMEWMEKRNSKFPRTYNHAVHLDLVCKTKGVVAAESYFNSLPPPAMDMYTYGTLLNCYCQELMADKALDLFDKMNE LGYVTSLNFNNLMTLFMKLGQPLKVHQLVDEMKQRNIPMSAFTYHAWMNSYAALNDLDEVERIFEKMKVEDEDKIEWQTY SNLAVIYVKAEQFEKAESMLRKLERKVKPRPREAYLAAIYVKDNKFKKAGEMFQKLEQKVRPRPREAYHCLISLYAKTGN LEKVYKLWYFLKSVSPVINESYLIMICALKRLNDMEGLIKCFKEWESRCERYDLRLVSTVISAYLSEDMGEEAALVFKEA MKKSKGPFFKIRERFMVFFLEKRQLDGAVSHLEAALSEVVGDEWRPFPHVVRAFVKYYKEETDLDGVDELSKILKTHNFD DSWLQSSIAASESSPENEDSIVNGALQNLQDDVHCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 275 | 271 | 2.8E-180 | – | |
| PANTHER | 5 | 275 | 271 | 2.8E-180 | – | |
| Gene3D | 34 | 166 | 133 | 1.1E-13 | ||
| ProSiteProfiles | 62 | 96 | 35 | 5.579 | ||
| SUPERFAMILY | 75 | 327 | 253 | 5.61E-12 | ||
| ProSiteProfiles | 131 | 165 | 35 | 11.224 | ||
| TIGRFAM | 133 | 164 | 32 | 1.6E-6 | ||
| Pfam | 133 | 162 | 30 | 4.3E-7 | ||
| Gene3D | 167 | 276 | 110 | 1.2E-17 | ||
| ProSiteProfiles | 169 | 199 | 31 | 6.149 | ||
| Pfam | 190 | 328 | 139 | 1.3E-6 | ||
| ProSiteProfiles | 200 | 234 | 35 | 8.67 | ||
| TIGRFAM | 202 | 230 | 29 | 1.5E-4 | ||
| ProSiteProfiles | 236 | 266 | 31 | 6.708 | ||
| PANTHER | 276 | 502 | 227 | 2.8E-180 | – | |
| PANTHER | 276 | 502 | 227 | 2.8E-180 | – | |
| Gene3D | 277 | 510 | 234 | 3.2E-12 | ||
| ProSiteProfiles | 304 | 338 | 35 | 6.73 | ||
| ProSiteProfiles | 373 | 407 | 35 | 7.311 | ||
| Pfam | 378 | 402 | 25 | 0.39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0243600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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