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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243600 |
| Transcript ID | LotjaGi5g1v0243600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G02370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; TrEMBL-Plants: tr|A0A151QRR1|A0A151QRR1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0243600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55231658..55235439) extracted from Lotus japonicus Gifu genome v1.2.
CACTTATACTAAAATCAGTTGCTTAATTATTTATACCAAATGGCATTCTACTTAACTTTAAAAATTAAAACTAAAAATAA AAAATCTCCCATCCCTGAAATATTGTGATTTGTGCGGTTTGTTAAACCCTAACAAAACCCTGCTATAGCACATTCTGCGA GAGGTAACAAATAGACAAGGCACCTGCATTAGCACATTCCGAGAGCAACGAAAATGAATCTCGTCCGTCTAATTTCCGGC CGAGGAAGGCTTCTCCGCCAGCTGTGCACGGGGGCTACGGAGGCCAATCGTCCGGCGAAGAAGCAAGGCCTTTATCAAAG GTTATCAGAGAAGGAAAAGACCGGATTGAGCGCGTCAGAGACGTTGAACCAGTACATGACAGAGGGCAGAGTCGCCGGAA AAAGCGAACTCATGCGTATCGTCAAGGAGCTCCGTAAGTATCGCAGGTTCCAGGATGCTCTTGAGGTATCAAAATCTTTG GCAACTTTTTTCTTTTTAAATTTAATTTCTATCTACATTGTTGTTCGATCCGTGAGCGGTGCATATGGAAAATCATTTAT TATACCGACTTAATGTAATCTCCGAGCCTCGAGGGATAGGATAAGGATACATTTGGAAACCAAATATAATTTCATTTCCA TTGCAGGTAATGGAGTGGATGGAGAAGAGGAATTCTAAGTTTCCGCGGACATATAATCATGCAGTGCATTTAGATCTTGT GTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTACTTTAATAGTCTTCCTCCTCCTGCCATGGACATGTACACATATG GTACTCTTTTGAATTGTTACTGTCAGGAACTAATGGCGGATAAGGCATTGGATCTGTTTGACAAGATGAATGAATTGGGT TATGTCACTTCTTTGAATTTCAACAATCTGATGACTCTGTTCATGAAGTTGGGTCAGCCACTGAAAGTGCATCAGCTGGT GGATGAGATGAAGCAGAGGAACATTCCCATGAGTGCATTCACGTATCATGCGTGGATGAATAGCTACGCCGCTTTGAATG ACCTAGATGAGGTTGAGAGGATCTTTGAGAAGATGAAAGTAGAAGATGAAGACAAAATTGAGTGGCAGACTTATAGCAAC CTTGCTGTTATTTATGTGAAGGCTGAACAGTTTGAGAAAGCAGAGTCGATGCTTAGGAAGCTGGAACGAAAGGTGAAGCC GCGGCCGCGTGAAGCATACCTTGCTGCTATCTATGTGAAGGATAACAAATTTAAGAAAGCAGGGGAGATGTTTCAGAAGC TGGAACAAAAGGTGAGGCCGCGGCCGCGCGAAGCATACCACTGCTTAATTAGTCTTTATGCAAAAACTGGTAATCTTGAG AAGGTTTATAAGTTATGGTATTTCCTCAAGTCAGTCTCTCCAGTGATCAATGAAAGCTATCTTATCATGATTTGTGCTCT TAAAAGGCTTAATGATATGGAGGGCTTAATCAAGTGCTTTAAGGAGTGGGAATCTAGGTGCGAACGTTATGATTTGAGGT TGGTTAGTACTGTAATAAGTGCTTACTTGAGTGAGGACATGGGTGAAGAAGCTGCATTGGTGTTTAAGGAGGCTATGAAG AAGAGCAAAGGACCTTTCTTTAAGATTAGGGAAAGGTTCATGGTATTCTTCTTGGAGAAACGTCAATTGGATGGTGCTGT TAGCCACTTAGAGGCGGCGCTTTCGGAAGTCGTGGGTGATGAATGGCGTCCTTTCCCACATGTTGTGAGGGCCTTTGTAA AGTATTATAAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCAAGACTCACAACTTTGATGATTCC TGGCTTCAGAGTTCCATTGCAGCATCTGAGTCATCTCCTGAAAATGAAGATTCTATTGTCAATGGTGCACTTCAGAACTT GCAAGATGATGTTCACTGTGAATAAGAAAGAACTCTGGTGGGATTATTTGTAAGAATCAGCTAGAAGACCCAATTATTTT TTCAAATTCTATTTAGCATGCTGTACTTTTTTTCTATACTATTTTGAGTCACTTTTCACTTTAGGAATAGTATTGGAAAT TTGCACTCTCCAATGTGACAATTTCTGCAAATCTTTATACTAGGCAATGTTTAACCGACTTGGATCCTTTACCGTTGCAA AATAACTGCAGGGTGTGTGCAGTTGGCCATTAAATTAAAACTGAATAGAATTTAATTTTAAAATATAAACTTGTCATCTA ATAATATAAATCAAAGATCATACTCGTGTAGCTTATCCTAATCCATAATTTACAGCTAGGCTAAACTAAACCAGGGCAGA GCAATTTTTCTTGAACTATAGATTTACCTTTGAAACTGATCAGTTGATACTTTTTTTTAAAATGGGTTATCACTATAACT TACCATGAAGACATACTGTTAAAACAACTCCACGGTTTTGGATTTAGAGTATGTCAAATACCTTCTAACTTTTAAGACAT TACTTCTTCTGATGATCATTTATATATGCATTTTCATAAGAGTGCAACTTAGTAATCTCTTTTTTTTAAGTAGTTGCCCT TATGTGGATTCTTATGAATATTGAACGGTAATGTTGTTCAAAAGTGAGTTTGGTGACGTGTGACAGGTGCGAATATAGAG GTCTCTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTCTAGGAGGAGGCAAGATTGCTGCTATGA TGGTTGATGAGTTTGATAAGATCATCTTTATTTTATTTTTTTGAATTCTTCCACTGATGCCTGTAACAGTCTAGAGAACT TTATTAGAGATCCTAAAATTGTTTTAGTTTTGAAGCAAGGGTTACTGCACTGACTTATCAATGCAATGTCAATTCTGTAG ACCTACCAGATGGAACCTCACGCAGTAGTCGGGTGATCACCTGTACTTTTCTCTGTTTGATCTTTATAATCCAGTAATAT TCAATGTGATGTGTTTACACAATCTTTTAGGTGTATGTGGAAAGATGCCTGTATCTAAAAGAAAGCAAGTGTGTTGGTAT TTGCACTAACACCTGTAAGTTTCCAACACAGGTTAGTGATTCTTCAAAATACCATAAGAGCTAAAATTACCGTGATTGCT TTGAAGTTCTTGCATTCTCTGGATGATTGCATCTGACTCTATTTACAATGTAGGCCTTCTTCAGGGATTATATGGGAGTG CCATTACTTATGGAGCTGTCAGGTGATTGAGTATTGTAACCTTTTTACAATTGATTCTCAATTTGGAGAAGTTCATGTGA GTAGGTTCTGCTATTGATTTTGAAGAAAATAAGTTGATTCAAACATGCTATTAAAATTGCAGTTCAAATTTGGAGTTCTT CCCCCACTTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCAACGAAGAATGGTCGCCAGAAAAACAGATA TTACTGCATGCCCCAAGACATGAATACATTTTTCTTGGGCTTAAGAGTTTTGGGATCATTGTGCAATTTCCAAATCCTCT TGCACATTCTGGGAGTGTCTTTGAAAATGAAACTGAAGCTTGTGTTTTCTATACAGATAATTCATTTTTCACTGAGTTCA TATATGCAAATTTTAATACAACTCATCCTTTGTAAATAGGATGGTTAATATTTTTGACTTGTTTGTATATTATGAATGTA TTTCCCGAGTGAATACATTGATATTTAGTCACCTTGTTTGCGACATTGTAAGATTATTACATAGCTACTAAAATAGTTAC TCTTTCCCTGGTTAAAGACAAC
CDS sequence (LotjaGi5g1v0243600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGATGGAGAAGAGGAATTCTAAGTTTCCGCGGACATATAATCATGCAGTGCATTTAGATCTTGTGTGCAAAAC CAAAGGGGTGGTTGCAGCTGAGAGTTACTTTAATAGTCTTCCTCCTCCTGCCATGGACATGTACACATATGGTACTCTTT TGAATTGTTACTGTCAGGAACTAATGGCGGATAAGGCATTGGATCTGTTTGACAAGATGAATGAATTGGGTTATGTCACT TCTTTGAATTTCAACAATCTGATGACTCTGTTCATGAAGTTGGGTCAGCCACTGAAAGTGCATCAGCTGGTGGATGAGAT GAAGCAGAGGAACATTCCCATGAGTGCATTCACGTATCATGCGTGGATGAATAGCTACGCCGCTTTGAATGACCTAGATG AGGTTGAGAGGATCTTTGAGAAGATGAAAGTAGAAGATGAAGACAAAATTGAGTGGCAGACTTATAGCAACCTTGCTGTT ATTTATGTGAAGGCTGAACAGTTTGAGAAAGCAGAGTCGATGCTTAGGAAGCTGGAACGAAAGGTGAAGCCGCGGCCGCG TGAAGCATACCTTGCTGCTATCTATGTGAAGGATAACAAATTTAAGAAAGCAGGGGAGATGTTTCAGAAGCTGGAACAAA AGGTGAGGCCGCGGCCGCGCGAAGCATACCACTGCTTAATTAGTCTTTATGCAAAAACTGGTAATCTTGAGAAGGTTTAT AAGTTATGGTATTTCCTCAAGTCAGTCTCTCCAGTGATCAATGAAAGCTATCTTATCATGATTTGTGCTCTTAAAAGGCT TAATGATATGGAGGGCTTAATCAAGTGCTTTAAGGAGTGGGAATCTAGGTGCGAACGTTATGATTTGAGGTTGGTTAGTA CTGTAATAAGTGCTTACTTGAGTGAGGACATGGGTGAAGAAGCTGCATTGGTGTTTAAGGAGGCTATGAAGAAGAGCAAA GGACCTTTCTTTAAGATTAGGGAAAGGTTCATGGTATTCTTCTTGGAGAAACGTCAATTGGATGGTGCTGTTAGCCACTT AGAGGCGGCGCTTTCGGAAGTCGTGGGTGATGAATGGCGTCCTTTCCCACATGTTGTGAGGGCCTTTGTAAAGTATTATA AAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCAAGACTCACAACTTTGATGATTCCTGGCTTCAG AGTTCCATTGCAGCATCTGAGTCATCTCCTGAAAATGAAGATTCTATTGTCAATGGTGCACTTCAGAACTTGCAAGATGA TGTTCACTGTGAATAA
Protein sequence (LotjaGi5g1v0243600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWMEKRNSKFPRTYNHAVHLDLVCKTKGVVAAESYFNSLPPPAMDMYTYGTLLNCYCQELMADKALDLFDKMNELGYVT SLNFNNLMTLFMKLGQPLKVHQLVDEMKQRNIPMSAFTYHAWMNSYAALNDLDEVERIFEKMKVEDEDKIEWQTYSNLAV IYVKAEQFEKAESMLRKLERKVKPRPREAYLAAIYVKDNKFKKAGEMFQKLEQKVRPRPREAYHCLISLYAKTGNLEKVY KLWYFLKSVSPVINESYLIMICALKRLNDMEGLIKCFKEWESRCERYDLRLVSTVISAYLSEDMGEEAALVFKEAMKKSK GPFFKIRERFMVFFLEKRQLDGAVSHLEAALSEVVGDEWRPFPHVVRAFVKYYKEETDLDGVDELSKILKTHNFDDSWLQ SSIAASESSPENEDSIVNGALQNLQDDVHCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 190 | 190 | 1.2E-155 | – | |
| PANTHER | 1 | 190 | 190 | 1.2E-155 | – | |
| Gene3D | 19 | 192 | 174 | 1.7E-25 | ||
| SUPERFAMILY | 24 | 242 | 219 | 4.93E-11 | ||
| ProSiteProfiles | 46 | 80 | 35 | 11.224 | ||
| TIGRFAM | 48 | 79 | 32 | 1.2E-6 | ||
| Pfam | 48 | 77 | 30 | 3.4E-7 | ||
| ProSiteProfiles | 84 | 114 | 31 | 6.149 | ||
| Pfam | 104 | 243 | 140 | 6.5E-7 | ||
| ProSiteProfiles | 115 | 149 | 35 | 8.67 | ||
| TIGRFAM | 117 | 145 | 29 | 1.2E-4 | ||
| ProSiteProfiles | 151 | 181 | 31 | 6.708 | ||
| PANTHER | 191 | 417 | 227 | 1.2E-155 | – | |
| PANTHER | 191 | 417 | 227 | 1.2E-155 | – | |
| Gene3D | 193 | 424 | 232 | 2.1E-12 | ||
| ProSiteProfiles | 219 | 253 | 35 | 6.73 | ||
| Pfam | 256 | 283 | 28 | 1.4 | ||
| ProSiteProfiles | 288 | 322 | 35 | 7.311 | ||
| Pfam | 293 | 317 | 25 | 0.31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0243600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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