Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243600 |
| Transcript ID | LotjaGi5g1v0243600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G02370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; TrEMBL-Plants: tr|A0A151QRR1|A0A151QRR1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0243600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55231702..55235343) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTACTTAACTTTAAAAATTAAAACTAAAAATAAAAAATCTCCCATCCCTGAAATATTGTGATTTGTGCGGTTTGTTA AACCCTAACAAAACCCTGCTATAGCACATTCTGCGAGAGGTAACAAATAGACAAGGCACCTGCATTAGCACATTCCGAGA GCAACGAAAATGAATCTCGTCCGTCTAATTTCCGGCCGAGGAAGGCTTCTCCGCCAGCTGTGCACGGGGGCTACGGAGGC CAATCGTCCGGCGAAGAAGCAAGGCCTTTATCAAAGGTTATCAGAGAAGGAAAAGACCGGATTGAGCGCGTCAGAGACGT TGAACCAGTACATGACAGAGGGCAGAGTCGCCGGAAAAAGCGAACTCATGCGTATCGTCAAGGAGCTCCGTAAGTATCGC AGGTTCCAGGATGCTCTTGAGGTATCAAAATCTTTGGCAACTTTTTTCTTTTTAAATTTAATTTCTATCTACATTGTTGT TCGATCCGTGAGCGGTGCATATGGAAAATCATTTATTATACCGACTTAATGTAATCTCCGAGCCTCGAGGGATAGGATAA GGATACATTTGGAAACCAAATATAATTTCATTTCCATTGCAGGTAATGGAGTGGATGGAGAAGAGGAATTCTAAGTTTCC GCGGACATATAATCATGCAGTGCATTTAGATCTTGTGTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTACTTTAATA GTCTTCCTCCTCCTGCCATGGACATGTACACATATGGTACTCTTTTGAATTGTTACTGTCAGGAACTAATGGCGGATAAG GCATTGGATCTGTTTGACAAGATGAATGAATTGGGTTATGTCACTTCTTTGAATTTCAACAATCTGATGACTCTGTTCAT GAAGTTGGGTCAGCCACTGAAAGTGCATCAGCTGGTGGATGAGATGAAGCAGAGGAACATTCCCATGAGTGCATTCACGT ATCATGCGTGGATGAATAGCTACGCCGCTTTGAATGACCTAGATGAGGTTGAGAGGATCTTTGAGAAGATGAAAGTAGAA GATGAAGACAAAATTGAGTGGCAGACTTATAGCAACCTTGCTGTTATTTATGTGAAGGCTGAACAGTTTGAGAAAGCAGA GTCGATGCTTAGGAAGCTGGAACGAAAGGTGAAGCCGCGGCCGCGTGAAGCATACCTTGCTGCTATCTATGTGAAGGATA ACAAATTTAAGAAAGCAGGGGAGATGTTTCAGAAGCTGGAACAAAAGGTGAGGCCGCGGCCGCGCGAAGCATACCACTGC TTAATTAGTCTTTATGCAAAAACTGGTAATCTTGAGAAGGTTTATAAGTTATGGTATTTCCTCAAGTCAGTCTCTCCAGT GATCAATGAAAGCTATCTTATCATGATTTGTGCTCTTAAAAGGCTTAATGATATGGAGGGCTTAATCAAGTGCTTTAAGG AGTGGGAATCTAGGTGCGAACGTTATGATTTGAGGTTGGTTAGTACTGTAATAAGTGCTTACTTGAGTGAGGACATGGGT GAAGAAGCTGCATTGGTGTTTAAGGAGGCTATGAAGAAGAGCAAAGGACCTTTCTTTAAGATTAGGGAAAGGTTCATGGT ATTCTTCTTGGAGAAACGTCAATTGGATGGTGCTGTTAGCCACTTAGAGGCGGCGCTTTCGGAAGTCGTGGGTGATGAAT GGCGTCCTTTCCCACATGTTGTGAGGGCCTTTGTAAAGTATTATAAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTA AGCAAGATTCTCAAGACTCACAACTTTGATGATTCCTGGCTTCAGAGTTCCATTGCAGCATCTGAGTCATCTCCTGAAAA TGAAGATTCTATTGTCAATGGTGCACTTCAGAACTTGCAAGATGATGTTCACTGTGAATAAGAAAGAACTCTGGTGGGAT TATTTGTAAGAATCAGCTAGAAGACCCAATTATTTTTTCAAATTCTATTTAGCATGCTGTACTTTTTTTCTATACTATTT TGAGTCACTTTTCACTTTAGGAATAGTATTGGAAATTTGCACTCTCCAATGTGACAATTTCTGCAAATCTTTATACTAGG CAATGTTTAACCGACTTGGATCCTTTACCGTTGCAAAATAACTGCAGGGTGTGTGCAGTTGGCCATTAAATTAAAACTGA ATAGAATTTAATTTTAAAATATAAACTTGTCATCTAATAATATAAATCAAAGATCATACTCGTGTAGCTTATCCTAATCC ATAATTTACAGCTAGGCTAAACTAAACCAGGGCAGAGCAATTTTTCTTGAACTATAGATTTACCTTTGAAACTGATCAGT TGATACTTTTTTTTAAAATGGGTTATCACTATAACTTACCATGAAGACATACTGTTAAAACAACTCCACGGTTTTGGATT TAGAGTATGTCAAATACCTTCTAACTTTTAAGACATTACTTCTTCTGATGATCATTTATATATGCATTTTCATAAGAGTG CAACTTAGTAATCTCTTTTTTTTAAGTAGTTGCCCTTATGTGGATTCTTATGAATATTGAACGGTAATGTTGTTCAAAAG TGAGTTTGGTGACGTGTGACAGGTGCGAATATAGAGGTCTCTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCA TAGCTCCTCTAGGAGGAGGCAAGATTGCTGCTATGATGGTTGATGAGTTTGATAAGATCATCTTTATTTTATTTTTTTGA ATTCTTCCACTGATGCCTGTAACAGTCTAGAGAACTTTATTAGAGATCCTAAAATTGTTTTAGTTTTGAAGCAAGGGTTA CTGCACTGACTTATCAATGCAATGTCAATTCTGTAGACCTACCAGATGGAACCTCACGCAGTAGTCGGGTGATCACCTGT ACTTTTCTCTGTTTGATCTTTATAATCCAGTAATATTCAATGTGATGTGTTTACACAATCTTTTAGGTGTATGTGGAAAG ATGCCTGTATCTAAAAGAAAGCAAGTGTGTTGGTATTTGCACTAACACCTGTAAGTTTCCAACACAGGTTAGTGATTCTT CAAAATACCATAAGAGCTAAAATTACCGTGATTGCTTTGAAGTTCTTGCATTCTCTGGATGATTGCATCTGACTCTATTT ACAATGTAGGCCTTCTTCAGGGATTATATGGGAGTGCCATTACTTATGGAGCTGTCAGGTGATTGAGTATTGTAACCTTT TTACAATTGATTCTCAATTTGGAGAAGTTCATGTGAGTAGGTTCTGCTATTGATTTTGAAGAAAATAAGTTGATTCAAAC ATGCTATTAAAATTGCAGTTCAAATTTGGAGTTCTTCCCCCACTTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATG CTTCCCAACGAAGAATGGTCGCCAGAAAAACAGATATTACTGCATGCCCCAAGACATGAATACATTTTTCTTGGGCTTAA GAGTTTTGGGATCATTGTGCAATTTCCAAATCCTCTTGCACATTCTGGGAGTGTCTTTGAAAATGAAACTGAAGCTTGTG TTTTCTATACAGATAATTCATTTTTCACTGAGTTCATATATGCAAATTTTAATACAACTCATCCTTTGTAAATAGGATGG TTAATATTTTTGACTTGTTTGTATATTATGAATGTATTTCCC
CDS sequence (LotjaGi5g1v0243600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGATGGAGAAGAGGAATTCTAAGTTTCCGCGGACATATAATCATGCAGTGCATTTAGATCTTGTGTGCAAAAC CAAAGGGGTGGTTGCAGCTGAGAGTTACTTTAATAGTCTTCCTCCTCCTGCCATGGACATGTACACATATGGTACTCTTT TGAATTGTTACTGTCAGGAACTAATGGCGGATAAGGCATTGGATCTGTTTGACAAGATGAATGAATTGGGTTATGTCACT TCTTTGAATTTCAACAATCTGATGACTCTGTTCATGAAGTTGGGTCAGCCACTGAAAGTGCATCAGCTGGTGGATGAGAT GAAGCAGAGGAACATTCCCATGAGTGCATTCACGTATCATGCGTGGATGAATAGCTACGCCGCTTTGAATGACCTAGATG AGGTTGAGAGGATCTTTGAGAAGATGAAAGTAGAAGATGAAGACAAAATTGAGTGGCAGACTTATAGCAACCTTGCTGTT ATTTATGTGAAGGCTGAACAGTTTGAGAAAGCAGAGTCGATGCTTAGGAAGCTGGAACGAAAGGTGAAGCCGCGGCCGCG TGAAGCATACCTTGCTGCTATCTATGTGAAGGATAACAAATTTAAGAAAGCAGGGGAGATGTTTCAGAAGCTGGAACAAA AGGTGAGGCCGCGGCCGCGCGAAGCATACCACTGCTTAATTAGTCTTTATGCAAAAACTGGTAATCTTGAGAAGGTTTAT AAGTTATGGTATTTCCTCAAGTCAGTCTCTCCAGTGATCAATGAAAGCTATCTTATCATGATTTGTGCTCTTAAAAGGCT TAATGATATGGAGGGCTTAATCAAGTGCTTTAAGGAGTGGGAATCTAGGTGCGAACGTTATGATTTGAGGTTGGTTAGTA CTGTAATAAGTGCTTACTTGAGTGAGGACATGGGTGAAGAAGCTGCATTGGTGTTTAAGGAGGCTATGAAGAAGAGCAAA GGACCTTTCTTTAAGATTAGGGAAAGGTTCATGGTATTCTTCTTGGAGAAACGTCAATTGGATGGTGCTGTTAGCCACTT AGAGGCGGCGCTTTCGGAAGTCGTGGGTGATGAATGGCGTCCTTTCCCACATGTTGTGAGGGCCTTTGTAAAGTATTATA AAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCAAGACTCACAACTTTGATGATTCCTGGCTTCAG AGTTCCATTGCAGCATCTGAGTCATCTCCTGAAAATGAAGATTCTATTGTCAATGGTGCACTTCAGAACTTGCAAGATGA TGTTCACTGTGAATAA
Protein sequence (LotjaGi5g1v0243600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWMEKRNSKFPRTYNHAVHLDLVCKTKGVVAAESYFNSLPPPAMDMYTYGTLLNCYCQELMADKALDLFDKMNELGYVT SLNFNNLMTLFMKLGQPLKVHQLVDEMKQRNIPMSAFTYHAWMNSYAALNDLDEVERIFEKMKVEDEDKIEWQTYSNLAV IYVKAEQFEKAESMLRKLERKVKPRPREAYLAAIYVKDNKFKKAGEMFQKLEQKVRPRPREAYHCLISLYAKTGNLEKVY KLWYFLKSVSPVINESYLIMICALKRLNDMEGLIKCFKEWESRCERYDLRLVSTVISAYLSEDMGEEAALVFKEAMKKSK GPFFKIRERFMVFFLEKRQLDGAVSHLEAALSEVVGDEWRPFPHVVRAFVKYYKEETDLDGVDELSKILKTHNFDDSWLQ SSIAASESSPENEDSIVNGALQNLQDDVHCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 190 | 190 | 1.2E-155 | – | |
| PANTHER | 1 | 190 | 190 | 1.2E-155 | – | |
| Gene3D | 19 | 192 | 174 | 1.7E-25 | ||
| SUPERFAMILY | 24 | 242 | 219 | 4.93E-11 | ||
| ProSiteProfiles | 46 | 80 | 35 | 11.224 | ||
| TIGRFAM | 48 | 79 | 32 | 1.2E-6 | ||
| Pfam | 48 | 77 | 30 | 3.4E-7 | ||
| ProSiteProfiles | 84 | 114 | 31 | 6.149 | ||
| Pfam | 104 | 243 | 140 | 6.5E-7 | ||
| ProSiteProfiles | 115 | 149 | 35 | 8.67 | ||
| TIGRFAM | 117 | 145 | 29 | 1.2E-4 | ||
| ProSiteProfiles | 151 | 181 | 31 | 6.708 | ||
| PANTHER | 191 | 417 | 227 | 1.2E-155 | – | |
| PANTHER | 191 | 417 | 227 | 1.2E-155 | – | |
| Gene3D | 193 | 424 | 232 | 2.1E-12 | ||
| ProSiteProfiles | 219 | 253 | 35 | 6.73 | ||
| Pfam | 256 | 283 | 28 | 1.4 | ||
| ProSiteProfiles | 288 | 322 | 35 | 7.311 | ||
| Pfam | 293 | 317 | 25 | 0.31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0243600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…