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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243700 |
| Transcript ID | LotjaGi5g1v0243700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G02370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; TrEMBL-Plants: tr|A0A151QRR1|A0A151QRR1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0243700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55236437..55238434) extracted from Lotus japonicus Gifu genome v1.2.
AAAACCCCTCCGAGGTAACAAATAGACAAGGCCTACCTGCGTTAGCACATTCTGAGAGCAACGAAAATGAATCTTGTCCG TATAATTTCCGGCGGAAGAAGGCTTCTCCGCCACCTGTGCACGGCGGTTACGGAGGCTGATCGTCCGGCGAAGGGGCGAA GCCTTTATCAAAGGTTATCAGAGTTGGAGAAGACCGGAATGAGCGCGTCACAGACGTTGGACCAGTATATATCAGAGGGC AAAGTCGCCGGAAAGAAGGAGCTCATGAGTATCGTCAAGGAGCTCCGGAAGTATCGCAGATTCCAGGATGCTCTTCAGGT ATCAAAATCTTCTGCGTTGAGCTCTATCATAAATCCATTAACAATCAAATGTTTATCTCATTATCAATAGTATCGTCATA ATTTAGTTTTCGATCGAGCTCAATAGCGTAGTGTAGTGTGATCCATATAGCCGACCTCACTTACTGGGATACGGTTTTTG TTATTGTTGTATTCCCTTGCAGATAATGAAATGGATGGAGAGTAGGGTAGAGTCTCCCTTGGATTATAATTATGCAGTGC ATTTAGATCTTGTGTGCAAAAACGAAGGGGTGGTTGCCGCTGAGAATTACTTCAATAGTCTTCCTCCTCTTGCCATGAAC AAGTACACATATGGTGCTCTTTTGAATTGTTATTGCAAGGAACTAATGGTAAATAAGGCATTGGCTCATTTTGACAAGAT GAATGAATTGGGTTATGTCACTTTTTTGAGTTTCAACAATCTGATCGGTATGTACATGAGGTTGGGTCAACCACTGAAAG TGCATGAGTTGGTGCATGACATGAAGGAGAGGAACATTCCCATGAGTGCATTCGCATATCATGCGTGGATGAATAGCTAC GCCGCTTTGAATGACCTTGTCGGGGTTGAGAAAATCTATGAACTGATGAAATTAGAAGTTGAAACCAAAATTGATTGGTT GACTTATAGCAACCTTGCTGCTATCTATGTGAAGGCTAAACAATTTGAGAAGGCAGAGTTGATGCTTAGGAAGCTGGAAC AAGCGGTGAAGCCGCGGAAGCGCGAAGCATACCATTGCTTACTGAGTCTTTATGCAGGAACTGGTAATCTTGAAAAGGTT TATAGTTTATGGGATTCCCTCAAGTCAGTCACTCCAGTGCTCAATGTCAGCTATCTTTGCATGATTTCTGCTCTTAAAAG GCTAAATGATATGGAGGGCTTAATCAGGTGCTTTAAGGAGTGGGAATCTAGGTATGGACATTGTGATTTAAGGTTGATTA GTGCTGTAATAAGTGCTTACTTGAGTCATGATATGGGTGAAGAAGCTGCATTGGTGTTTAAGGACGCTATCAAGAAGAGT AAAGGACCTTTCTTTAAGATTCGGGAAATGTTCATGATATTCTTCTTGGAGAAATGTCAATTGGATGGTGCTGTGAGCCA CTTAGAGGCAGCGCTCTCGGAAGTCGTGGGTGATGAATGGCGTCCTACACCACGTGTTTTGAGGGCCTTTGTAAAGTATT ATAAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCATGACTCACAACTTTGATGATTCCTGGCTT CAGAGTTCCATTGCAGCAGCTGAGTCATCTCCTGAAATTTATCCAATATTGAATGAAGATTCTGTTCTTGAGAACTTGCA AGATGATGTTCACTGTGAATAAGAAAGAACTCTGGTTGGATTATTTGTAAGAACCAGCTAGAAGACTCATTGACAAATTC TATTTAGTATGCTGTACTTGTTTTCCTATACTATTTTGAGCAACTTTTCACTTTGCAAATGATATTGAAAACTTGCTCTC TCCAATGTCACAATTTCTGCAAATCTTTATATTATGCAATGTTTTCCATTCCAGTCTTGGATCCTTTACCTTTAACGTTG CAAAATTACTGCAGGGTGTGTGCAGTTTGCTATTAAATTAAAACTGATGTAATTTAATTTTAAAATATAAACTTGTCA
CDS sequence (LotjaGi5g1v0243700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTTGTCCGTATAATTTCCGGCGGAAGAAGGCTTCTCCGCCACCTGTGCACGGCGGTTACGGAGGCTGATCGTCC GGCGAAGGGGCGAAGCCTTTATCAAAGGTTATCAGAGTTGGAGAAGACCGGAATGAGCGCGTCACAGACGTTGGACCAGT ATATATCAGAGGGCAAAGTCGCCGGAAAGAAGGAGCTCATGAGTATCGTCAAGGAGCTCCGGAAGTATCGCAGATTCCAG GATGCTCTTCAGATAATGAAATGGATGGAGAGTAGGGTAGAGTCTCCCTTGGATTATAATTATGCAGTGCATTTAGATCT TGTGTGCAAAAACGAAGGGGTGGTTGCCGCTGAGAATTACTTCAATAGTCTTCCTCCTCTTGCCATGAACAAGTACACAT ATGGTGCTCTTTTGAATTGTTATTGCAAGGAACTAATGGTAAATAAGGCATTGGCTCATTTTGACAAGATGAATGAATTG GGTTATGTCACTTTTTTGAGTTTCAACAATCTGATCGGTATGTACATGAGGTTGGGTCAACCACTGAAAGTGCATGAGTT GGTGCATGACATGAAGGAGAGGAACATTCCCATGAGTGCATTCGCATATCATGCGTGGATGAATAGCTACGCCGCTTTGA ATGACCTTGTCGGGGTTGAGAAAATCTATGAACTGATGAAATTAGAAGTTGAAACCAAAATTGATTGGTTGACTTATAGC AACCTTGCTGCTATCTATGTGAAGGCTAAACAATTTGAGAAGGCAGAGTTGATGCTTAGGAAGCTGGAACAAGCGGTGAA GCCGCGGAAGCGCGAAGCATACCATTGCTTACTGAGTCTTTATGCAGGAACTGGTAATCTTGAAAAGGTTTATAGTTTAT GGGATTCCCTCAAGTCAGTCACTCCAGTGCTCAATGTCAGCTATCTTTGCATGATTTCTGCTCTTAAAAGGCTAAATGAT ATGGAGGGCTTAATCAGGTGCTTTAAGGAGTGGGAATCTAGGTATGGACATTGTGATTTAAGGTTGATTAGTGCTGTAAT AAGTGCTTACTTGAGTCATGATATGGGTGAAGAAGCTGCATTGGTGTTTAAGGACGCTATCAAGAAGAGTAAAGGACCTT TCTTTAAGATTCGGGAAATGTTCATGATATTCTTCTTGGAGAAATGTCAATTGGATGGTGCTGTGAGCCACTTAGAGGCA GCGCTCTCGGAAGTCGTGGGTGATGAATGGCGTCCTACACCACGTGTTTTGAGGGCCTTTGTAAAGTATTATAAAGAAGA AACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTCATGACTCACAACTTTGATGATTCCTGGCTTCAGAGTTCCA TTGCAGCAGCTGAGTCATCTCCTGAAATTTATCCAATATTGAATGAAGATTCTGTTCTTGAGAACTTGCAAGATGATGTT CACTGTGAATAA
Protein sequence (LotjaGi5g1v0243700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLVRIISGGRRLLRHLCTAVTEADRPAKGRSLYQRLSELEKTGMSASQTLDQYISEGKVAGKKELMSIVKELRKYRRFQ DALQIMKWMESRVESPLDYNYAVHLDLVCKNEGVVAAENYFNSLPPLAMNKYTYGALLNCYCKELMVNKALAHFDKMNEL GYVTFLSFNNLIGMYMRLGQPLKVHELVHDMKERNIPMSAFAYHAWMNSYAALNDLVGVEKIYELMKLEVETKIDWLTYS NLAAIYVKAKQFEKAELMLRKLEQAVKPRKREAYHCLLSLYAGTGNLEKVYSLWDSLKSVTPVLNVSYLCMISALKRLND MEGLIRCFKEWESRYGHCDLRLISAVISAYLSHDMGEEAALVFKDAIKKSKGPFFKIREMFMIFFLEKCQLDGAVSHLEA ALSEVVGDEWRPTPRVLRAFVKYYKEETDLDGVDELSKILMTHNFDDSWLQSSIAAAESSPEIYPILNEDSVLENLQDDV HCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 472 | 468 | 1.8E-169 | – | |
| PANTHER | 5 | 472 | 468 | 1.8E-169 | – | |
| Gene3D | 32 | 164 | 133 | 3.5E-12 | ||
| ProSiteProfiles | 62 | 96 | 35 | 5.656 | ||
| ProSiteProfiles | 130 | 164 | 35 | 10.117 | ||
| Pfam | 132 | 161 | 30 | 3.8E-5 | ||
| TIGRFAM | 132 | 162 | 31 | 4.4E-4 | ||
| SUPERFAMILY | 134 | 357 | 224 | 4.34E-7 | ||
| Gene3D | 165 | 270 | 106 | 8.4E-16 | ||
| TIGRFAM | 167 | 199 | 33 | 3.6E-4 | ||
| ProSiteProfiles | 167 | 198 | 32 | 6.686 | ||
| Pfam | 167 | 196 | 30 | 4.8E-4 | ||
| ProSiteProfiles | 199 | 229 | 31 | 6.029 | ||
| ProSiteProfiles | 235 | 265 | 31 | 6.971 | ||
| Pfam | 238 | 263 | 26 | 0.47 | ||
| ProSiteProfiles | 270 | 304 | 35 | 6.5 | ||
| Gene3D | 271 | 461 | 191 | 1.2E-10 | ||
| Pfam | 273 | 298 | 26 | 0.64 | ||
| Pfam | 306 | 333 | 28 | 0.32 | ||
| ProSiteProfiles | 339 | 373 | 35 | 6.95 | ||
| Pfam | 344 | 368 | 25 | 0.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0243700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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