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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0246600 |
| Transcript ID | LotjaGi5g1v0246600.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi5g1v0246600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55514476..55517991) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTAAGACGGTGGATCTTCCTCCCAAGGGCGGCTTCAGTTTTGATCTCTGCAGAAGAAATGCAATGCTTGAACAGAA GGGCCTTAAGGGCCCATCCTTTCTGAAGACTGGGACGACTATTGTTGGTTTAGTTTTCCAAGTATGAATGGCTTATACTT CATCTTATGTGGTTATTTTGGGTTCACTATTTTTTTCTGTGTCTTCTTTATCATGGTGAGTTAATGACCAAAACACGTAG GCCTCATATTGAATAGTGGGTCCAACATACAGGACGTGAGCTCGTGTTTCACCACGCTCAATCTAGAATGACTTCAAATA TATAAGTGGTATATAATCGGTTGAATTGGGTTTTATTAGTGGCAGGGAAGATGTGCTTAGGACGTGTCTTGTGTTCAAAT TTTATGATGTTGGAGCAATATTTGGTTGCATTTTTTGGAGGGAGGGGAGTGATGAAATTGGGAAGCCTAGAATGACATGT TGTCTTGATTGTTATGTTCTTAGCCTAGCAACTTTTTGGACCCAACTAGTATAATTACAGTAGCACTATGCCTCCTCTCT CTCTCTCTCTCTCTTTCTCTAACAACCTCGCTTGTATCTTATGGTATTTGTTAAAATTTATTCTAAAATATATGAATGGT TGATTTTATTTTCTGGACGGCCTTTAGAAACAATTGGAAGCAAGTAAAGTTGTAAAACTCATGCATTGGTTTATGAAGAT GGCAATGGATAATTGGTTGCTCATGTAATTTCTTATCATATTGAGCTCAGTGGTGGATCTTTAGTTGTTCGGTTGAGTTT TTATCTTGCCTGCCTTGCTTCATCAAGCTGGGGAATAATATTAATCAATCTGGCTGTGGTTTTAATGTTGAAGTGGGGAT TTAATTGCACGTTTTGTATGGCTAATTTGAAATTGAGCTCCCTTGTCTAAAGATTGAGTTCTTATGAAGTGATCCGGTGC ACTCTAACTTTATAGCTTACAGTTAATGTGGTTATCCCCCTTTTTGTTGCTTTTAGTATTGCTGATCTTTTACGGAGCTG TTAGTCTCAGTTGGTTTTGTTAGTGGCAATTATCAGGTTGTTGATCATTGCACTTGGCTGCTACGATTTAGTTAGAAAGT TTTTCAGTGAAACTTACATGTCTATATATTCAAAATACTGCAATCAAACTCAACAATACAATACAAAGAAGTATTCACTG AAATACTGTTTCTCACTTTATTTCATCATCTTGAAAGCTGAACTACAGAATTTTTCCATTTTACATCTGTGCTCTTCATT ACTGTCCATGGCATGGTCACCCATACCAAATACGTTTTTATATAACTGCATGTTTTGATTGCATATTTTCTGTTTTTAAT GTCATAATTTGTAAACTATGATCAGGAACGGAACCAAGTGCAAAGAAAATGGGGCAGTCACCCCCCAAGAGAAAACTATT CCTTAATAGAATGGTTTTCAAATGATGTATTTGGCCCCCTCAAAATTTTTAGACTACCTATTCCAATAAGCTATTGTTGA TTTAGTGTGTTAAATTTTCGCCTCCTTGCCTGTTTTATTTTCTAGTTCTGTCCCTGACTGATCTAATTCTGACGTTTTCC ACGCAAAAAATTTGCCACAGGATGGTGTCATTCTAGGAGCAGATACTAGGGCAACTTCAGGATCCACAGTTGCTGATAAA AACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGAACTGCTGCTGACACAGAGGCTGTAAC AGGTATATTTTGAAATGCATGCTATAACATTTTTACTTCATACCTTGTGCATAGTGGCATATAGGTGTTGTTTAAGTTTT GCTCTTGTAATATGGTAAAACCATTGAAAATGGGCTGTATTTACTGCAGACATGGTTAGCTCCCAACTCCAACTACATCG CTACCATACTGGTCGAGAATCGAGAATTGTTACAGCACTAACCCTTCTTAAGAGACACCTCTTCAAGTTGAGTTTTTAGA CCTTACATCTCTATTGAATTCGATCTCTGTATCAAACTCTGATTCTGGTCTGACTCTTAAAATTATTCTGCAGTTACCAA GGTCAGGTCTCGGCTGCCTTAGTTCTTGGTGGAGTTGATGCAACTGGCCCTCATTTGCATACTGTTAGTTCATTGCCTAA ACCTTTCTTTTGTACTTAACTTTCCTTGTTTTGAATGCATATAGTTTGATTTCTCATGACAATTCATGACATTTTGTGCA GATTTATCCACATGGTTCAACTGACACACTCCCATTTGCTACCATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTG AGTCTAAATACAAGGAAAGCTTGACTGTAAGTGACTAAGTGAGCATATTAAGGCTCAGAAATCATGCTCACTTCAATATC TCTTACTAAAATAATTTTGAGGAAAGATGCTGTTGAAGCTTTCTAGACACGTAATTTGATAAGATTCTTTCAAATGTTAT TCTATTTATAATCTTTTTATGGAATGAAACTAATATGTAAATTTTGAGTCTAAATATTACAATGTGCATTGTAATTGTTA TAATTGATGATTGGTGATACTGGGATTGTATATGTAATGTTGCAATTTTATAGATATTTCAATTCACTATAAACATTCTG CTGTGGTGCAGAGGGATGAAGGAATAAAAATAGTTGTTGAGGCAATATGTGCTGGTGTTTTTAATGACTTGGGAAGTGGA AGTAATGTTGATGTTTGTGTCATAACCAAGGTTAGTGCCTTGATGCCTAATACTAGTACAAGTTATTGTTCGAGGGGATG AATCTGATTTTAATTTGTGCAAATTCTTTACTTTTTCTTCACAGGGACATAAGGAATATCTCAGGAATTACCTCACACCA AATCCTCGCACATATGTCAATCCAAAAGGCTTTACTTTTTCCAAAAAGACTGGTTTGTTGCAAACTATACTAATTTATTA CACTTGAGACCAGAATAAACTAAATTGTTTTGCTTAGCATTGTGCATCATTATTTGTAGTCATATTATCATGAATCATGA TATATTTTGTCATCATCTGAAAATTTGACAATCTTGGGAATATGGTATTGCGAAGTACCATACTTGGATAATAGCTGAAA ATTAAAAGACCCTTTCAACATAGAAAAATGTACAATTTTCATTCCTTGTACTACAAATTTAAACGATTATTTGCTTAAAA TCATATTATATTGTGGAAATCACATTTGTTATTGCTATTCAAGAGTCTTATTAAAAGCTGAATTCATGCTGAGGTCTGGA GAAAATAACCAAGCATTGATATGACTGCCTCTTCTACCTGTGTCTTTCCATATTCTTCTTTCTACTTTTCTTTCTAGCTG ATTAAACAGTATGAAATATATTCCATTTGAAATTATTGATATATAGGCTCTAACGTTTTATTATATTTGTCGGTTACAGA GGTTCTCTTAACAAAGATTACCCCCTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGGAGATGCCATGGAAGAGTAG
CDS sequence (LotjaGi5g1v0246600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAAGACGGTGGATCTTCCTCCCAAGGGCGGCTTCAGTTTTGATCTCTGCAGAAGAAATGCAATGCTTGAACAGAA GGGCCTTAAGGGCCCATCCTTTCTGAAGACTGGGACGACTATTGTTGGTTTAGTTTTCCAAGATGGTGTCATTCTAGGAG CAGATACTAGGGCAACTTCAGGATCCACAGTTGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATAT TGCTGTGGAGCAGGAACTGCTGCTGACACAGAGGCTGTAACAGACATGGTTAGCTCCCAACTCCAACTACATCGCTACCA TACTGGTCGAGAATCGAGAATTGTTACAGCACTAACCCTTCTTAAGAGACACCTCTTCAATTACCAAGGTCAGGTCTCGG CTGCCTTAGTTCTTGGTGGAGTTGATGCAACTGGCCCTCATTTGCATACTATTTATCCACATGGTTCAACTGACACACTC CCATTTGCTACCATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAATACAAGGAAAGCTTGACTAGGGA TGAAGGAATAAAAATAGTTGTTGAGGCAATATGTGCTGGTGTTTTTAATGACTTGGGAAGTGGAAGTAATGTTGATGTTT GTGTCATAACCAAGGGACATAAGGAATATCTCAGGAATTACCTCACACCAAATCCTCGCACATATGTCAATCCAAAAGGC TTTACTTTTTCCAAAAAGACTGAGGTTCTCTTAACAAAGATTACCCCCTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGG AGATGCCATGGAAGAGTAG
Protein sequence (LotjaGi5g1v0246600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKTVDLPPKGGFSFDLCRRNAMLEQKGLKGPSFLKTGTTIVGLVFQDGVILGADTRATSGSTVADKNCEKIHYMAPNIY CCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKRHLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTL PFATMGSGSLAAMSVFESKYKESLTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTPNPRTYVNPKG FTFSKKTEVLLTKITPLKEKVEVIEGGDAMEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 11 | 228 | 218 | 3.26E-63 | ||
| PANTHER | 23 | 266 | 244 | 1.6E-137 | – | |
| PANTHER | 23 | 266 | 244 | 1.6E-137 | – | |
| Pfam | 36 | 216 | 181 | 7.5E-48 | ||
| ProSiteProfiles | 38 | 216 | 179 | 48.809 | ||
| Gene3D | 39 | 269 | 231 | 3.1E-74 | ||
| CDD | 39 | 227 | 189 | 9.26797E-132 | – | |
| ProSitePatterns | 42 | 89 | 48 | - | ||
| PRINTS | 46 | 61 | 16 | 2.1E-9 | ||
| PRINTS | 166 | 177 | 12 | 2.1E-9 | ||
| PRINTS | 177 | 188 | 12 | 2.1E-9 | ||
| PRINTS | 202 | 213 | 12 | 2.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi5g1v0246600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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