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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0253600 |
Transcript ID | LotjaGi5g1v0253600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O65819|H2B3_SOLLC Histone H2B.3; TrEMBL-Plants: tr|I3SW26|I3SW26_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0253600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56252091..56252507) extracted from Lotus japonicus Gifu genome v1.2.
ATCGCAATGGCCAAGGGCGAGAAGAAGCCAGCGGAGAAGAAGCCCGCCGCCGAGAAGGCACCACCGGCGAAGGCGGAGAA GAAGGTCCCGACGAAGGACGCGGCCTCCGTTGACAAGAAGAAGAAGAAGAAGTCGAAGAGCGTCGAGACCTACAAGATCT ACATCTTCAAGGTGCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCTATGGGGATCATGAATAGCTTCATC AATGATATCTTTGAGAAGCTTGCTCAGGAGTCTTCGAGACTTGCGAGGTACAACAAGAAGCCTACCATCACCTCGAGGGA GATTCAGACTGCTGTTCGCCTTGTGCTTCCCGGTGAGCTTGCTAAGCATGCTGTCTCTGAGGGTACCAAGGCTGTTACGA AGTTTACCAGCTCTTGA
CDS sequence (LotjaGi5g1v0253600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGGGCGAGAAGAAGCCAGCGGAGAAGAAGCCCGCCGCCGAGAAGGCACCACCGGCGAAGGCGGAGAAGAAGGT CCCGACGAAGGACGCGGCCTCCGTTGACAAGAAGAAGAAGAAGAAGTCGAAGAGCGTCGAGACCTACAAGATCTACATCT TCAAGGTGCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCTATGGGGATCATGAATAGCTTCATCAATGAT ATCTTTGAGAAGCTTGCTCAGGAGTCTTCGAGACTTGCGAGGTACAACAAGAAGCCTACCATCACCTCGAGGGAGATTCA GACTGCTGTTCGCCTTGTGCTTCCCGGTGAGCTTGCTAAGCATGCTGTCTCTGAGGGTACCAAGGCTGTTACGAAGTTTA CCAGCTCTTGA
Protein sequence (LotjaGi5g1v0253600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGEKKPAEKKPAAEKAPPAKAEKKVPTKDAASVDKKKKKKSKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 45 | 45 | - | – | |
PANTHER | 2 | 136 | 135 | 6.0E-76 | – | |
PANTHER | 2 | 136 | 135 | 6.0E-76 | ||
Gene3D | 4 | 136 | 133 | 4.7E-60 | ||
Pfam | 7 | 112 | 106 | 1.5E-22 | ||
SUPERFAMILY | 22 | 136 | 115 | 4.51E-52 | ||
SMART | 39 | 135 | 97 | 1.0E-71 | ||
PRINTS | 49 | 67 | 19 | 2.6E-49 | ||
PRINTS | 68 | 88 | 21 | 2.6E-49 | ||
PRINTS | 90 | 107 | 18 | 2.6E-49 | ||
ProSitePatterns | 104 | 126 | 23 | - | ||
PRINTS | 107 | 120 | 14 | 2.6E-49 | ||
PRINTS | 120 | 133 | 14 | 2.6E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0253600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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