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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0253700 |
| Transcript ID | LotjaGi5g1v0253700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding KH domain protein; TAIR: AT5G04430.2 binding to TOMV RNA 1L (long form); Swiss-Prot: sp|Q9LZ82|BTR1_ARATH Protein BTR1; TrEMBL-Plants: tr|A0A151T0U1|A0A151T0U1_CAJCA RNA-binding protein Nova-1; Found in the gene: LotjaGi5g1v0253700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56257442..56266207) extracted from Lotus japonicus Gifu genome v1.2.
TTCATGGAGTCGTGGAGACACCAAGTGACACACACTAGCTCACAAGAAACGCACACAGATTGACACATCACGCACCGCAG AGGAAGAAATAACAAAAGAGAGAGAGAGAGAGAGAGAGTGAGTGTAATTCCAAAACCCAAACAAAACAAACGTGACGTTG TTGGATATGTAGTAGCAGCAGCAGAAGAAACAAACTGCAGCACCCACCCACCCTTCTTCCTCTTCTCTCATCTCCGCCTC CACACACCACACCCTCACCCTCACCCTCACCCTCACCTCACTCTCTCTCTCCTCTCCGCTCCTCCCTCCACTCTCTCTCT CTCTAAAACCGTTTCTTCTCCTCTCTCTCCTCACGCCATTGTCACCTCTCTCTCTATCTCGGAATTCACCGGAGAAAGAG TTTGTTGCCTTCGCTGTTGCTGTTGTTGCTGAAGAAGAAGAAGAAGAACCATGGAGTCGACGGAATCTTCCTACGTATCT TCACCGGAGGGACCGAGGAAACACCCTGCTTCACCTCCTCCAGATCCCTCTTCTCCAGGTAACCAACCTACCGGATCTGA TCTATCTGATCTGCTTTCTCTCTGCTCTTCACTGTATAATGTAGGACGGTCACTCATTTCTCGTCGTCATCGTCGTTGTT GTTGTTGTTGTTGTTGCTGTTATTGTGCACGGTCAACGTCTTCATTCCTAACCCTAATTGTTCCTATCACACGTTCAATG CTGTTTCTGAATTAGATTTCGATTTTATTTTGTCATGCGAGGATGTGATTTTGCTTTTTTCTGTTTTGGTAATTGAATGA TTAGCCTTACGATTTTGGAGTCAAGTTATCTGTTTCTGATTTAGAATTTTCTTCAATTGTTGATTTCTTAGATGCACTGC GACGCTGAAGGAAAATGTTAAACCAAACCGAAAACCTAGAAGGAAAATTAGGCACTCATGGATTTACTCCATGTGAAGGA AAATATACATTTTCTTTTCATTTCTTAGAAGCAAATGGATTTTTAGAGAATATTTTGAGAAATGTTGGAGTTGATTCAGT TTCCGATGAACTCAGGTCGTATTCTACTCATAGTAGTCAATCGCGGATCGCGGCCTGTCGCGGATGAACCCCAAAAATGA AATCCCATACAAGGGAAGGCCGCTATTGGCCGCCGGGATCCCGTCGCGGCAGGGGTCCGCTACGCTACGTGACGGCGCTA TCGTGCGCTATGGATAACTATGATTCTGCTACGCCCTATTACCAATTAGAATGTGTGGGCTTTATCATACAACTGGAATT TCGCTTTGACTGTTGCATTTGAATTGATAAGTTTCTAAGATTCAGTTCCGCAGCCTTGTAGAATTGGGGGTGGAAAATTC AGGGTGAGTTTGTCTTTGGTTTTTCAAGCTAAAGCAGTTTTGGTTTAAACCTAGGAACACTGGTTTCCGAGGTTATTGTT CATGTATGATGGAGTGAAAACTTGCTTTCTTTCTCTTATTTTTATGTTTTCCATAAAAGAAATGCCATGTGTGCTTATTT TTATGCGTTTATTATAATAGTTGGAACTATCATTTCTTTTCGTAGTGGTGGTTCAAAGGATGCATAGTTGGTTTCGTAAG GTGAGGAAAATTGTTCTTTGAATATAAAATCTGGAAAAGAATTATGTTATAGAATGGCTGTGAAATTGCAAAATTCAAAT GGTTACTAAGTACTAACCTTTTATGGACTTTTCATTTGTTTTGTTTGATGTGTACAAAAAAGTATGTTATTCCTGGAAAA ATGTAATGATAAGAGTGCTTATGTAAAATTACGAAGTTCAAATTGTTGCTACCTCTTATTTTACTTCAAATATACCAGTA TTACGGGGGCTTCTTGTAAGCTTTGTTATGTTATTGATTTCTGTTCTGACATTTTGACATTTGATGATTTGATCCCACGT GATTGAAACTTTAGTGCTACCGCGTCTTGTGTTTTATTTTTATCTTCTAGTATCTGTATATTAATTTTCCCCCAATTGCA TTAGTTATACTTTGATTTGTATATACATAAAGTGTTAATGGATTCTTTTGTTATTATTTTTACATAATGTTTACTTCTTT CAGAATTCGTGGAAAAGCCCACATATGTTCGGTTTCTCGTATCAAACTCTGCAGCGGGTTCTGTTATTGGAAAGGGTGGT TCAACTATTACTGATTTTCAGTCACAGTCTGGAGCACGAATTCAGTTGTCACGCAATCATGAATTCTTTCCTGGAACTAC TGATAGGATTATCATGGTATCTGGTTCAATTAACGAAATACTAAGAGCTGTGGAGCTTATTCTTTCTAAGTTGCTCAGTG AGGTAATCTCCATGATCTTGATTTAATCAGTTATTGGAAGAAAATGCATGCTTCTAAGGTTGATTTGCCTTCTGTAATCA GCTTCAGAGTGAGGATGAGAATGATGCTGAGCCAAAAACAAAAGCGAGGCTTATTGTTCCTAACGGTTCTTGTGGTGGAA TAATTGGCAAGGGAGGTGCTACTATTAGGTACTATTCCTTTGCTCTGTCATTACTGTAGGGCCTACTTGTTTGCCATGTT TATAAAACATGTACTGGTCAGAGTGGTTTTTAATACTCATGCCTTTTAATTTCTGTTATGATAATATGTCTTGATTTCAA GAGGTTATTTCTTGTATCAATGGGTGCTGGTTCTTTGGTGTTAGAACTATTGTTTCTCTTTGCTGTCCCTCCAGCTAAAA AAGAGTGTTATTGTTAGGTCAACTATTATTTTTCATTGCAGAATTCTTTCTATATGCTCTTACATTATTTGGAGATAGGG ATAAAAAACTTGGCTTATGCATTCTTTGCTTTTGATCAGGTCATTCATTGAAGAATCTCAGGCTAGCATTAAGATATCTC CTCAAGATAACAATTACTATGGACAGAATGATAGGCTAGTGACACTGACAGGAACTCTTGATGAGCAGATGCGTGCAATT GATCTAATTGTTTCCAAGTTAGCTGAGGATCCTCACTATTCACAGTCCATGAATTCTCCATTTTCATATCCTGGTTAGTG CCATTTTCATATCCTCATAATTGTTTCCAAGTTAGCTGAGGATCCTCACTATTCATAGTCTATTATTTCTCTTTGCTGTC TCTTATCCATTCTCCCTTTTCATATCCTGGAAACATCATGATTCTTTTTGAAATCTGCAATTGAGAATGTTAGTTTTGGG TGGAGAGAAATAGTTCCCCATAGGAGCTGTGCTCTGGGCAGTAGAAACCTTTTCTACCGAGTAGTTTCCTTATTCACAAA TAATACACACAGCATTATCCATTTCTTTTCTGCCAATTCCATACATGCCATTTACTGTTGGGTTTAGTTTGTATCACAAT CACAATCTAAGTGCTTAACCTATTGGGTAGAGGCCTAAAACTAATTTACTTTTCTAAGAGTAACATATTTGAAATAGAGC AACAATGTACAACCATGGTTGTCTCTAATTCTCTAACAATACAAATACAACAGTAGATAGCATACTTCTAACAAGCTCAT TTTTTGAGATATTCTTTACTTTTATTTTAAATACAACAGAAGTGACAGTAATCCAGATACAATATGCTTTGTCCTGTAAA AGTAGCATGTTTCATGATGAATCATTATTGGTGAGTTTCATGCTATAAGTATAACTTTTTGTTAACGTACCTTTTAGGTG TTTACATGTCGCCAGGTTATCCTGGTGTTCCATATACATATGTGGTTCCACCTGTTGCACCACCGGCATACAATGCAATG AATTACAGATCTAATGGCGCTGGAGGAAAGTTTCAGAACAGCAAGGTTCTTCTCATTCCATTAATTTATCTTGTTAATCA TTTCTAATTTGCAAGTTTCCAAGATCTCAGACACACTCATAATAAAAGGAAGATAATAAATTTCCATATCTTCTAATTTG CATGATAGATACCAGTTCCTTTGTTACTCGTGAAATTCCAGTTCCTATCTTCATACTCAATGGGATCATGCATAATTTTT CCTAATTCGTACACTAAGTTGAATGAATAGATGTACAAGAAAAGATAAAATTAGCAATGAATATATATGGGAGGAGGTTA GAGTTACACCTATTATCGAGTATATGATGGAAAGTCATCTAAGGTGGTTTGGTCATTTGAATTGAAGACTAATGGAGGCT TAAGTGGAAAAAGTGGATCAGATCCAAGATAGTTCAATTAAAGGGTTAGTGGAAGACCTGAGAACACTTTAAGTGGAGTT AATGAAGACCTTGTTCTAAATGGTTTTACTGAAAACATGGTTATGAGAAAGTCTTTTGATAAAACAGATTCCACTGATGT CTGTCTATGACTATAATTCATATAGTTGACTTCCCCTAGTGTGTGAATACTTATTCAAATGGGCACTCATTGTTCAAATG GATTAAGATTTGAGACAACCTTGCAGAATAGGAACCATAGTCCTCAACCTTGTGTATCTTCTACTATGAATATTTTTTTG AAAGGAGTCTACTATGGATATTAACATTGTAAAGGAATGAAATTCACTTATGACATATGCATCTTTAGCGTGAAGTAATG CATAGCCTTGAGATCTAGTTTATCAGCTTGTAATGCAGTTTTATGGGAATAGTGTTTGAATACTATGATTTTTGGTGATT CTGTAGACATGCACTCATTTCTAATCAAATAGGGAGTAAAAAGCTGTACCCTAGTCATTGCTACTTCATGAATATATCTT TGTGACTGTAGTTGCAGACTAAGAGCAGGTTGTTTTATGTCATTGCATTTTTTTTTGTAATGTGAAAGAAATCTTGTAAC ATATGAATGGTTCTAAACAATAAAATGTGGCATTTGAAATAAACTGCTTTTCCTGTGTTTGCTTACGGAACTTCAGCGGG TGATTTATTTTGACTGTAGCTAACTAACCAAATAGGCTGCTGTTTGCATTTTAGGTGAACAATGCTTGGTTATCACCCCT GTTTGCTGACATGAGTGGGTGCTAACTTTTTTATTACTGGAAGGAAATAAGCTTAGATATGATGGTTTAGGATTTCTACT ATCAAACATCAATCTTTGCATATTCATACAATGTTATAAAAAAAATTTACAATAATTTATTCACTGACTATGCAATAACG CAAACTTATGGTAAAGAGCTGAGTTAAAAAAAAAAAAATTGGTGTAACCATGGTGTGATATTAAATGTTTGTACTTTGAA TCTAGCTTCAGATGGTTTAAAGGCTAACTTTGTCCATATTTAGGATGAATTGTCAGTCCAATTCGTTGAATAGGTTAGTC CAACATTTCAAATCATGATGAGTACCTGTTTGGTTTGCTTGGGGTTATGTTGGGGAGGTGGTGTAAGATTTTACAAATAT ATGGAAATGTTAATATACGTGAGTCTTGAAATTGGAAACATGATAACTAGAGTGTGATTCTTTTTTGGCTTAAATGCACT TTTGGACCCCCAAGTTTATATTTTTTGCGATTGTTGACCCTGATCTTATTTTTCTACGAATGGAGACCCTAATCTTTCAA AATGTTGCACCGTTTACCCTTCCGTCCAAATCCGTCAAAAACTTGACGGAACCCACTTACCTGGCCTTCCGACGGAAGGG TAAACGATGCAACGTTTTGAAAGATTAGGGTCTCCATTCAAACTAAAAATAAGATCAGGGTCAACAATCGCAAAAAATGT AAACTTGAGGGTCCAAAAGTGCATTTAAGCCATTTTTTTTAAATCCCCCTTTTATCCACGTGGAAGGCCATATCAGCGTG TTCCGTCAAGTTTTTGACGGATTTGGACGGAAGGGTAAACGGTGCAGCGTTTTGAAAGAATAGGGTTCCCATTCGTAGAA AAAAAAGATAAGGGTTGACAATTGCAAAAAGTTAAAACATCAGGGTCCAAAAGTGCATTTAAGCCTTCTTTTTTTTGTTG AATGAGAAAAATACTTGAGTTTCAAATTTAGGGATCTGTCATTATATTTGGCTCACTTTCCTTGCATACAATTCTTTTTC TCAATCATGCCAAATTCAACATGCTATCATGAGATGCCAATTATTAATGGTGATTGCCTGATTGGTGAATTCAGTGAATG CGAAAAAACTACTCATCTTCTCTGTTTAAATCCTTGCATCCTTATGTAATTGTAATATTGCTCTATAAGAAGTATTCTTG TGTTGTTTTCCAGGAGGAGCGGAGTAACTCACTGACCATTGGCGTTGCAGATGACCATGTAGGGTTGGTTGTTGGTCGTG GTGGAAAGAATATAATGGATATTAGTCAGGTTTGCTGTTGCCTAACAGTATTACATGGTATAATGTGAATACTTATTCAA CAAACTAACTCGATTAACCTTTGCCTTTTCAGATTAGTGGGGCAAAGATAAAGATATCAGATAGAGGCGATTACATATCT GGAACAACTGATAGGTAGGAATTTTAGCTCGAGATTTTGCGTCTTCACATAATTTCTCTTACCTTTAGTGTTTTACAAGT GTTGTATTTCCTCATTATACAGGAAAGTTACCATAACAGGATCGCAGAGAGCAATTCGTACAGCTGAATCCATGATTGTG CAGAAGGTTGCTTATGCTACTGAGAGAGTGGTCGAGTAGTTTGCAGGTTGACTTGTCTACTGTTCAATGCTTGATGAACC TGTTTGCTAATTGCTTATACATTTGCTGAATTTTTTGGGATTTGTCTACGTAAATTTATATTCATATGGTAAACTTTTGG AGATTTTCATTGTAGTGGGAGAGGTTTTTTTTCTTTTTTCTTTGAATTGAGAACGGTCTTATAGATTTCTTCACGAACCC CTTGGAAAGACAAAAGCGATTGGAAATGGCATTTGTGCTTTTCCAAGTGTAGTATTCTAGAACTTAAATTCTTTTGTTGT AAGTCAACAGTTGCTAATATCATATACACCACGGTCCTTGCTATCTTTGTGTTTAGTATAACTGCTCCTCTAACAACGTC ATTTTTTTCGGTGCGTCTCAACAGCACGTGTATATGTTATTTTATGTTTGCCATCGTCGGTGATTGATTACATTATCAAT ATTGTGCGTGAGTCCTCGCTTTTCAATGTCAAGATATATATGTGTTTAGTATGTTTGATATGACTGTGATAAGGATTTGT CAAACATTCCCTTTCAAAGCCATCATAGTTAACATTGAAATGCTTTTCACATCAAGTGTTGTACGAAGTTTGTACCATTT AGTCAGATGTGTTTAATTTTGATGTATAGTACCTTGAATTTACAACCTTTTATGTTAGTACAATTTGATTAAGAGAAGTA ATTTTCTCAATGTTTTCTTATTTTAATTCAGTTAAATCTTTTAAACAAATAAACAATGTAGCAACACGGTTTACATTTTT CTGCAGAAGACTAAATAAAAGGAAAAAGACAATAATTGAATATGCAAGCATATGCAATTTGTAAATATTCTTTGCATCAT TCCATGTCCTGATCAATTGAACACCAGTGTTATACGTTGACTTCAAGAAAAATAAGACAAGAATTTTCTTCAAAAAGAGG AAGAAGTGTTATATAGGGAAAAACAATGATTATCATACACCAATGTTCTTTTTGACAGAAAGATGGAACTTTCATTAATG AGAACTACTCAAATCAGAGGAAAGTATTCCCACCAAACCAGTAGGGTACTCCTCCAAACCAATGTTCTTTTATATATTAA TTAATGTGAAGCTTGATAACAATATCACATGCAATGATTATCATTATATCATACACTGTAACACCTATATAGTAACCACA ATACTAACTATAAAACCACCATATATGCAGGAAGGATCACACTGCTTTATTTTGAATACATCATATATCGATCGAAATAA GATTGAATATTAAAATAATAAACAACTCTTCATACGTTTAAGGGAACTCAATGATTTCCTCCCCATCCAGACCCGGATCC TGAACCATAGCCAGACCCACTGCCATAACCAGACCCTCCATTACCACCACCACCGCCACCTCCACCACCACCTCCTCCAC CGCCGCCACCACCACCACCAATTCCTCCTCCTTCACCATAGCCACCTCCTTCACCATAGCCAGAACCAGAACCATAGCCG GAACCCCCAGAACCTCCACCACCTCCTCCACCTCTGCCACCCCCACCACCTCCACCTCCTCCTTTCCCACCACCAGACCC GTATCCTGACCCAGAGCCATACCCTGACCCAGAGCCATACCCTGAACCACCATTCCCACCACCACCTCCTCCACCACCTC CTCTACCACCACCACCTCCACCTCCTATGGCTCCACCACCATACCCTTCACCCCCACCAGACCCTGAACCATACCCATAA CCACGTCCACCAAGACCACCGCCGCCACCACCACCACCTCCTTCACCACCACCACCTCCACCACCTCTTCCACCAAGTAA CTTATCTGGCACCCTAACAGCAAAGGCAATGTCCACAATGAGGAAAACAATGAAAACAGCTCCTATAACCTTGGAGCTGG CCATCTTACACCGCCACAAATTCAATACGTGATGATAATAACAGAAGTTCTGAAAATGAGAATGTGATGATATGAGTATG ATTTCTGTATAAGAAAACACACACTAACAATGGCAAACAATAGCAAGAAAATGTATTGGAGTACTGCTTCTTGTTCTGGG ATGCAAAAAAAGTGAGGGGTAAGGGACCCTATTTATACACGTTGTAAAGCTTGTTCTAGTAGGTTCCTTTTGATACACCT ATTTTACAAGGAACTAGATTATATCATATCATGATAATTTTGGAGG
CDS sequence (LotjaGi5g1v0253700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCGACGGAATCTTCCTACGTATCTTCACCGGAGGGACCGAGGAAACACCCTGCTTCACCTCCTCCAGATCCCTC TTCTCCAGAATTCGTGGAAAAGCCCACATATGTTCGGTTTCTCGTATCAAACTCTGCAGCGGGTTCTGTTATTGGAAAGG GTGGTTCAACTATTACTGATTTTCAGTCACAGTCTGGAGCACGAATTCAGTTGTCACGCAATCATGAATTCTTTCCTGGA ACTACTGATAGGATTATCATGGTATCTGGTTCAATTAACGAAATACTAAGAGCTGTGGAGCTTATTCTTTCTAAGTTGCT CAGTGAGCTTCAGAGTGAGGATGAGAATGATGCTGAGCCAAAAACAAAAGCGAGGCTTATTGTTCCTAACGGTTCTTGTG GTGGAATAATTGGCAAGGGAGGTGCTACTATTAGGTCATTCATTGAAGAATCTCAGGCTAGCATTAAGATATCTCCTCAA GATAACAATTACTATGGACAGAATGATAGGCTAGTGACACTGACAGGAACTCTTGATGAGCAGATGCGTGCAATTGATCT AATTGTTTCCAAGTTAGCTGAGGATCCTCACTATTCACAGTCCATGAATTCTCCATTTTCATATCCTGGTGTTTACATGT CGCCAGGTTATCCTGGTGTTCCATATACATATGTGGTTCCACCTGTTGCACCACCGGCATACAATGCAATGAATTACAGA TCTAATGGCGCTGGAGGAAAGTTTCAGAACAGCAAGGAGGAGCGGAGTAACTCACTGACCATTGGCGTTGCAGATGACCA TGTAGGGTTGGTTGTTGGTCGTGGTGGAAAGAATATAATGGATATTAGTCAGATTAGTGGGGCAAAGATAAAGATATCAG ATAGAGGCGATTACATATCTGGAACAACTGATAGGAAAGTTACCATAACAGGATCGCAGAGAGCAATTCGTACAGCTGAA TCCATGATTGTGCAGAAGGTTGCTTATGCTACTGAGAGAGTGGTCGAGTAG
Protein sequence (LotjaGi5g1v0253700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESTESSYVSSPEGPRKHPASPPPDPSSPEFVEKPTYVRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPG TTDRIIMVSGSINEILRAVELILSKLLSELQSEDENDAEPKTKARLIVPNGSCGGIIGKGGATIRSFIEESQASIKISPQ DNNYYGQNDRLVTLTGTLDEQMRAIDLIVSKLAEDPHYSQSMNSPFSYPGVYMSPGYPGVPYTYVVPPVAPPAYNAMNYR SNGAGGKFQNSKEERSNSLTIGVADDHVGLVVGRGGKNIMDISQISGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAE SMIVQKVAYATERVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 4 | 324 | 321 | 1.4E-154 | – | |
| PANTHER | 4 | 324 | 321 | 1.4E-154 | – | |
| MobiDBLite | 16 | 30 | 15 | - | – | |
| Gene3D | 32 | 111 | 80 | 5.1E-24 | ||
| SMART | 34 | 107 | 74 | 4.7E-11 | ||
| SUPERFAMILY | 35 | 111 | 77 | 7.01E-18 | ||
| ProSiteProfiles | 35 | 102 | 68 | 16.437 | – | |
| Pfam | 38 | 103 | 66 | 1.3E-14 | ||
| CDD | 38 | 103 | 66 | 3.03299E-20 | – | |
| Gene3D | 119 | 197 | 79 | 9.1E-21 | ||
| SMART | 120 | 193 | 74 | 7.9E-12 | ||
| ProSiteProfiles | 121 | 188 | 68 | 15.347 | – | |
| SUPERFAMILY | 123 | 197 | 75 | 5.55E-17 | ||
| Pfam | 125 | 189 | 65 | 5.9E-14 | ||
| CDD | 125 | 189 | 65 | 5.74462E-18 | – | |
| Gene3D | 254 | 332 | 79 | 1.2E-20 | ||
| SMART | 255 | 328 | 74 | 1.2E-12 | ||
| ProSiteProfiles | 256 | 323 | 68 | 17.632 | – | |
| SUPERFAMILY | 258 | 329 | 72 | 2.34E-16 | ||
| CDD | 258 | 323 | 66 | 8.51929E-14 | – | |
| Pfam | 260 | 324 | 65 | 1.7E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi5g1v0253700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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