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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254000 |
| Transcript ID | LotjaGi5g1v0254000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-coumarate:CoA ligase 4; TAIR: AT1G20510.2 OPC-8:0 CoA ligase1; Swiss-Prot: sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5; TrEMBL-Plants: tr|A0A151T0U8|A0A151T0U8_CAJCA 4-coumarate--CoA ligase-like 5; Found in the gene: LotjaGi5g1v0254000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56282490..56285359) extracted from Lotus japonicus Gifu genome v1.2.
AGCTACTTAATACCTATCACTCTCCTGGCCGGCAACATAAAATTCAGAAAGAAAGAAAAAATAGTTTTCTCATTAATCTT GTCCTCACTACAACTGACATAGTTAACAATGTTGCTCCTATTACTTAACAAAGTGAAGCATTGTATATAAGTTGTTTAAG GTTCACTCTCATTTTGCCTCATCCTCACAACATTGTCAAGAGAAGAAGAATCATGTCAGGATCAGAGGAAGTTTGGTCAT CATCCATTGAAGAAGAATCTGGTCAATCTCTCCCTCCATTTGATAACAGCAGTGGCTACAATTCAAGAACAGGCATTTAT CACTCTCTAGTTAGCCTTGGCACCAAGCATGAAATCCCAACAAATCCTAACCTCAACACTGCCAATCTTGTGCTATCACA CTTCCCACATGCAGACCTTGCTGATGCAAGAATTGCATTCATTGACTCAGCTACTGATCAGAGAGTAAGCTACGGCGAGC TTCGCCGCTCTATTTATTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAAGAAAGGGGATGTAGTGTTTGTTTTG TCCCCAAACTCAATCTTGTATTCAACCATATGTTTAGCAGTGTTATCAGTTGGAGCAATTCTCACCACTGCCAACCCCCT CAACACTGAGTCAGAAATTGCCAAGCAAGTGCATGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGCTTCACA AATTAGTCCGAAGCGGGGTACCGACAATTATCACCTCTCGTCCATCTGATAAGAACATGTTATCAGTTGAAGAGTTAATA GAAGGTTGCTATGATTCACCTGAGTTGTTTCCGCATGTTCTTGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTC CGGGACAACCGGTGTAAGCAAAGGTGTGGTTTTGACTCATGCAAATCTCATTTCCATAATGAAACTACTCTCATGGTCTG CTGATGTATCTGCATCACAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTCCACATCTATGGACTAGTATTCTTTGGA TTGGGATTGTTGTCTGTTGGTGTTACAACAATTCTGATGCAGAAATTTGACTTCCAAGCTATGATCATTGCAATCCAGAA GTACAAAGTTAATAACTTACCAGCAGTGCCACCAGTGATCCATGGACTAGTGAAATCTGCAAGCAAAATTGGGTGTGCCT TGTCAAGTTTGAGAAGGGTGGGTTCAGGGGCTGCACCTCTGAGTAAGGAAATGGCACAGGAGTTCAGAAAGGTGTTTCCT TGGATGGAGCTAAGGCAAGGTTATGGGCTAACAGAAAGTTGTGGTGCAACATCATTTTTTGTATCAGACAAAGATGCTAA AGCTCATTTAGGATCATGTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTTGTGGACACTGAAACAGGAAAGCCTTTGC CTCCTCTTAAGGAAGGAGAGTTATGGCTGAAAAGTCCTACTATCATGAAAGGGTATCTAGGAAATGTGGAGGCGACAACT GCAACAGTTGATTCAGAAGGTTGGTTGAGGAGTGGTGATCTTGGTTATATTGATGAGAATGGATTTGTTCATGTGGTTGA ACGAATCAAGGAGCTAATCAAACACAAAGGGTATCAGGTACTCAAAGCCATAATAGTTTCAGTCTTCAATAGTTGAATAT CAGTAACTTTGTTAAGTTTTGAGGTATCAATGAGTTTGGAAATTAGAACTTTCTTCAGTTTTCGTTTATGCATATTTGGA TTTCTTGTTGCAGGTGGCTCCAGCAGAACTTGAATCTTTGCTGCTAAGTCATCCACTTATTGTTGATGCAGCAGTTATAC CGTGTGTTATCCTCAACAAGTTTTCTTTTCAATTTCATTTTCATTCTATCCTTGATTTTCTCATGTGGAGAGATATATTT CAGGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAAAGCAGCTGGTTCTGAACTCTCAGAAGACC AAGTCATTCAATTTGTTGCTGGCCAGGTAACTCTTAGCTCCTGCCTTCTCTCTTCTCCATGATCATTTTAGAGCATGTTT GGATTCACGTTTGTAGTGCTAAAATTGATTCTCTAGTGTCGGAATCATGTTTTGGATATTGGATGTTTTCACAATTGATT CTAGCTCCAAAATTGATTCGGGGGCGATGCTACAAATCCTAGCTTCTGCAATGAACTTAATAAATTGTGTTAACATAAAT CACTCCCGTTTCTGCTCACTTTTACCATTATCAATTTTATCAAAATTAATTTTATCCACAACCGATTCTGACAACCCTAA TCCAAACATGCATTTAGTTAGCCTCTTTCTTTAAACTCAAACTAAACTCGATAATTTTACAGGTTGCTCCATATAAGAAA GTGAGAAGGGTGAGTTTCATTGACACTATTCCAAGGTCAACTGCTGGAAAGATATTGCGCAAGAATCTTGTTTCTCAAAA CAAAAATCAACTTGTCTCCAAGTTATGATAAACCTTGGTTCAAGTGTTAGTTCACCTGAATGTTTTCCTGTGTCTCTAGT CAATGAAGAGTCGTTCATAAGTGAAAAGAAAAAAGAGGCCTCCTACTTCAGTTGGAACTAGGAAAATGGCCTTCTATTTT AGTGCTTCTTTTTCCACTTTTCTTTTTGTGCCCATCAACTGTCATGAAAATTGGTTACAGCTCCTGTGGAATGTGAACGC ATAGCTGAAGTTGCTAGTTCTAGACTTACTTATGCAAGCTTAGAGTTTCAATTTGTCAGTAGAGATTCCATGTTTCATTA AACTCTTGGGTGTGTAAAAGCATTTGGGCAAAAGGAAAAGAATCAACTCCCCACTCACTAGACAGTGAGA
CDS sequence (LotjaGi5g1v0254000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGATCAGAGGAAGTTTGGTCATCATCCATTGAAGAAGAATCTGGTCAATCTCTCCCTCCATTTGATAACAGCAG TGGCTACAATTCAAGAACAGGCATTTATCACTCTCTAGTTAGCCTTGGCACCAAGCATGAAATCCCAACAAATCCTAACC TCAACACTGCCAATCTTGTGCTATCACACTTCCCACATGCAGACCTTGCTGATGCAAGAATTGCATTCATTGACTCAGCT ACTGATCAGAGAGTAAGCTACGGCGAGCTTCGCCGCTCTATTTATTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGT TAAGAAAGGGGATGTAGTGTTTGTTTTGTCCCCAAACTCAATCTTGTATTCAACCATATGTTTAGCAGTGTTATCAGTTG GAGCAATTCTCACCACTGCCAACCCCCTCAACACTGAGTCAGAAATTGCCAAGCAAGTGCATGATTCAGGTGCTAAACTA GCCATCTCAGCACCAGAAGAGCTTCACAAATTAGTCCGAAGCGGGGTACCGACAATTATCACCTCTCGTCCATCTGATAA GAACATGTTATCAGTTGAAGAGTTAATAGAAGGTTGCTATGATTCACCTGAGTTGTTTCCGCATGTTCTTGTGGCACAAT CAGACACTGCTGCTATACTTTACTCTTCCGGGACAACCGGTGTAAGCAAAGGTGTGGTTTTGACTCATGCAAATCTCATT TCCATAATGAAACTACTCTCATGGTCTGCTGATGTATCTGCATCACAAGATGATGTTTTCTTGGCCTTCATTCCAATGTT CCACATCTATGGACTAGTATTCTTTGGATTGGGATTGTTGTCTGTTGGTGTTACAACAATTCTGATGCAGAAATTTGACT TCCAAGCTATGATCATTGCAATCCAGAAGTACAAAGTTAATAACTTACCAGCAGTGCCACCAGTGATCCATGGACTAGTG AAATCTGCAAGCAAAATTGGGTGTGCCTTGTCAAGTTTGAGAAGGGTGGGTTCAGGGGCTGCACCTCTGAGTAAGGAAAT GGCACAGGAGTTCAGAAAGGTGTTTCCTTGGATGGAGCTAAGGCAAGGTTATGGGCTAACAGAAAGTTGTGGTGCAACAT CATTTTTTGTATCAGACAAAGATGCTAAAGCTCATTTAGGATCATGTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTT GTGGACACTGAAACAGGAAAGCCTTTGCCTCCTCTTAAGGAAGGAGAGTTATGGCTGAAAAGTCCTACTATCATGAAAGG GTATCTAGGAAATGTGGAGGCGACAACTGCAACAGTTGATTCAGAAGGTTGGTTGAGGAGTGGTGATCTTGGTTATATTG ATGAGAATGGATTTGTTCATGTGGTTGAACGAATCAAGGAGCTAATCAAACACAAAGGGTATCAGGTGGCTCCAGCAGAA CTTGAATCTTTGCTGCTAAGTCATCCACTTATTGTTGATGCAGCAGTTATACCGTGTGTTATCCTCAACAAGTTTTCTTT TCAATTTCATTTTCATTCTATCCTTGATTTTCTCATGTGGAGAGATATATTTCAGGGTTGA
Protein sequence (LotjaGi5g1v0254000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGSEEVWSSSIEEESGQSLPPFDNSSGYNSRTGIYHSLVSLGTKHEIPTNPNLNTANLVLSHFPHADLADARIAFIDSA TDQRVSYGELRRSIYSLASALFHGLEVKKGDVVFVLSPNSILYSTICLAVLSVGAILTTANPLNTESEIAKQVHDSGAKL AISAPEELHKLVRSGVPTIITSRPSDKNMLSVEELIEGCYDSPELFPHVLVAQSDTAAILYSSGTTGVSKGVVLTHANLI SIMKLLSWSADVSASQDDVFLAFIPMFHIYGLVFFGLGLLSVGVTTILMQKFDFQAMIIAIQKYKVNNLPAVPPVIHGLV KSASKIGCALSSLRRVGSGAAPLSKEMAQEFRKVFPWMELRQGYGLTESCGATSFFVSDKDAKAHLGSCGKLIPTFCAKV VDTETGKPLPPLKEGELWLKSPTIMKGYLGNVEATTATVDSEGWLRSGDLGYIDENGFVHVVERIKELIKHKGYQVAPAE LESLLLSHPLIVDAAVIPCVILNKFSFQFHFHSILDFLMWRDIFQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 266 | 266 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Gene3D | 44 | 466 | 423 | 2.0E-118 | ||
| PANTHER | 48 | 499 | 452 | 6.5E-156 | – | |
| PANTHER | 48 | 499 | 452 | 6.5E-156 | – | |
| CDD | 48 | 499 | 452 | 0.0 | – | |
| SUPERFAMILY | 65 | 498 | 434 | 3.53E-112 | – | |
| Pfam | 72 | 470 | 399 | 9.7E-96 | ||
| ProSitePatterns | 219 | 230 | 12 | - | ||
| TMHMM | 266 | 288 | 23 | - | – | |
| Phobius | 267 | 289 | 23 | - | – | |
| Phobius | 290 | 526 | 237 | - | – | |
| Gene3D | 467 | 500 | 34 | 1.1E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi5g1v0254000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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