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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0259100 |
| Transcript ID | LotjaGi5g1v0259100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin ligase-like protein; TAIR: AT1G63900.1 E3 Ubiquitin ligase family protein; Swiss-Prot: sp|Q8L7N4|SP1_ARATH E3 ubiquitin-protein ligase SP1; TrEMBL-Plants: tr|A0A0S3SS32|A0A0S3SS32_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0259100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56729593..56734127) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAAAAATAAATGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATTACTCAGAAGCTATGAGACCTACGCGCTAGC CAACTGCGCCACCACCCCTTTGTGCTAATCTCACTACATTAAATTTACTTATCTACTCATATCATCATCTCATGTTAACC TTGCATTGGAAATTTTCATTGATCAATGGTTGCCACAAAATTTCATTGATTTTTTCATTTTTTGTGAGGTAGAAAGAAAA CCAAGGACCCTTTCTCTCACTTTACTCATTGCATCAAATTCCCATACCCTTTTCCCCCAAATCCAATTTTTCTCTCAATC ATTCCCCTGTTGAATAAAAAAAACAAACTTTGGTAGCTTTATCCGAACCCCAATTAATCAAAATCAAATTTTTCGTTCAT GATTTTGAGTTTTCCCTTTTGCAAACCTCAAATTTCAATTCAAGCTATGAATTTGGTGAGAGCTTAGGGTTTGAGGTTTG GTGGAGATGATTCCTTGGGGCGGTATCAGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTTGGCAGAAGCAGTGGCAG GTATATTGAATCGTTGCATGAGAATGGTGTTTGTGGTGTTGCTTTGATGTGTAAAGTTTGAATCTTTTTTCATTTGGGTG TAGGGATGCGGAACTTCTTAAATCTGTGACACGGGTTAATCAGTTGAAGGAGCTAGGTATGTGTCTTCTGTATTTGTTGT CAACAGAATTTGTACTTATGCAAATTTAAGTTGCATTATTGTTGTTTTGAATAGCATGATCCTAATTACTTGTCTTCAAA TGCATGTTATATCCTGTTGTGATTTTATGTATAGTTGGACTTGGATATAATCATAATCCAAGCAAAATTTTTTCAAGCCA ATGAGGTTTTTTGTACTGTCTTGTATTGCTGTTTAGTAGTTACAAAACAAATTGTTGGTTGGTGAAACTGGTTGAAGAAA GTATAGATAATCAGCCCTGACATAATTCACAACCTCCCTTTCCATGTTAAGAATGCTGGCCATTCAATAGGTAGCTTAAA TTCCATAATCCATACTAGTTTTTGGTGGTTGGGACTAGCAACATTTTTTTTAAGTTTGTTTGGTTTTTGAATTGTAGCTT CCAGGGACCAAATGTTGGTGGCATTCTAGAAAGTGCTAGTTGCCCCTGAGGTTGAGCTTATTTGGGTTGTTTGCTGATTA TCAATTGACATGATATATTCCTCATTTTGTTAACATTGAGTTTTCACTTTTCACATTCTGGCCTCCTTGATATGTATCGC AATTGATGTCACTTGCTATTAAAGCAAAGTTGTTGTGCATTTGTAAGTCCAGAGGATAGACGTTAGATGCACTTTCATTG TAGTATAGTTAATTAGTGATGCAATACTGTTGTTATTTCTGATCATGCTTGCTTGGGATTCTTCACTTTTCAGCACAACT GTTGGATGCGGATATATTACCCTTGGTTGTTTCAATTTCTGGAAGAGTTGGTTCTGAAAACCCAATTAACTGTGAATTCA GCAGTTTAAGAGGCGCAATAGTTGAAGAAACAGTATGTAGACATAAATTTCTGAAGAGCTTGAATAGTCTCTATTCTGTT TTATAAGGATGTTTGTTAGCTCATTTTAGCCCTTTGCCATTGATGCTGAACCTGTTTCGTAATTTTCTTTTTAGGCAGAG CAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCGGCTCTAATGCTATCCATGAGTAAAGAAGTTCC TTGGTATCTGGTGTGCAATTATCTCAGTTCCTCTGGTGGATTTTTTAACATGAACTATTATAATTATTATTGGTTATCAC TTATCAGGCAATTGGGATATTCTTCTTAAAGACAATATTTAAGTTTATGGACTGAAAACCCTCTTCTGAAGCTAAAAAAG GATTATAATAATTTTTTTTTACTGAATATATATTTTCTGAGTGAACATGAAATTCACTTGAAAAAAATATTGAAGATCAC AGTGCCTTCTATTTTGTGTGTTAGGAAGATGGGACTGATCGTGTGCATGTAGTTGGAGCTCGAGGTGCCACTGGTTTTGT ATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGAACATTGGACTATCTGCAAGGTCTTA AGGTGGGAGTGTTATAGTCACATCCATCCAACCCCTTCTGCTTCCCACACCCCCGCAAGAATAAAAGAAATTTAGAATCA CTGAGCTGCTTATTGAATTACTTTTTTCAGATGCTTGGAGTTAAGAGAATTGAGCGGGTGCTTCCTATTGGAACTTCCTT GACTGTTGTTGGTGAGGTAATCTAATTAGTTTCTAGAATATGGCTAGTTACTTTCTCAAGAGTGTTATACATTACTGGAA TTCATTGCAATTGGTATTAGCAGTGTTGCAGAGTAGATAGGTAATGGGACAAGACATAGTAGGAGTGGTACTTTCATGGA TACTAACTAGAATGCTATGTGCTTCTATGATATATACCTCATCACTTGAAATTTATCATTTCTAGTGCTGTTTTTGTGTC TATAAAATATTAATGCTTTTCTGTTTTTAAACATTTTTTAAACTGCATAACCAGGCTGCTAAAGATGATATTGGGACCGT TCGAATTCAGCGACCCTACAAAGGGCCCTTCTATGTCACTCCAAAAACGATAGATCAACTCATTGCAAATCTCGGGAAAT GGGCAAGGTTGCTATACTAATGTAGTTGCTTATTGTGTTTTTGGTGTGCTGGATTTTTTATTGACTAAATTCTCTTATTA GGTGGTACAAGTATGCTTCAATGGGCTTGACAGTGTTCGGTGCTTATCTAATAGCTAAACATGCTATTCGGTACATCTTG GAAAGACAGCGCCGCAACGAAATGCAAAGAAGGTACACGTCATTGGTGATTCTTCTTTTTAATGTCGGAAAAACTAAAAT CACATTGAAACTTGAAAGCTTTTTAACTAGAAAAATAATTTTACGATATTATTATGAACAAGAGTTCAGCTATCAACTTT CAGTGGAAGTATACCCCAAGTAATTCCACATTTCCACTCCATTGAGTCCATTCATCATTGCCTTGCACTTCATTTTCACT ATGAAGCTGTGCCATGGCTGGGTCGGGGGAAGGGTCACAAACCTATTGAACTACTGTTTTATACAGTCTTATCTAGTTAT CTTGCATTTACACGAGGCGGATTCCATGACTCAAACTTGTGATTTCCTTGTTACATGATAGTAGCTCCAACACGCTGCGC CAAGGTTTCCCCCCTCTGTCCTACTCATAATAGTCTGAAAATTTTAATGCAGGGTTCTTGCTGCCGCTGCTGCTAAGAGG TTGGGACACGATAATGAAGGTAAATTGCAGTGGTTCTGTTATATTTAAGTTTGCAATGGCTGTTTCAATATCTAAAAGTA ATATTTGATTCTTCCTCAGGTGAAAAGGCTGACGGCTTAGTAGACAGTGCTAAAAGGGAACGCTTAATTCCAGATTTGTG TGTAATATGCCTTGAGAAGGAATATAATTCTGTTTTTGTTCCGTAAGTTATCAATCTTCTCATCTTTCTTGCTTTGCATA GGATTTCCAACTTCAATTCCCACACACGCACCTACTAAACCAGTCAAACTGAGATATTCAAATCCCCTAAAGTAGAGTTA TCTATTCAGTTTCATGTCCCAATTAAAAGTCCCTAAGGTCTATGCTGTATTATCAGGTGTGGGCATATGTGCTGCTGTAC AGGTTGCTCTTCACACTTGACCAGTTGTCCTCTTTGCCGGCGACAGATAGAGAAGGTCGTGAAGACTTTTCGCCATTGAG TATTGTGCATAATACCTTGAGCCCAACTACGTAAAGCGACACGAAATGAGGAATCTTACCTCAAGAATCCAAGAGAGACA ATTTGGTCATTGATAGTTGTATGATTTATGCAACTTTCATCAGTCATTTTCACAGGCTTTGCCTATGAGCAATTCTGAAA CCAACGGCTTTAAAAGAAATATCAAGCTGGTTATTCACTGATTGGTTCTTTTGGCATAAAATTTGTAAATATTTGTTATC AGCACAAGTTGCATTGAACTCTTTTCAACTATCTTTGAACTTTCTACATGATAGAGCTTCACGGTACCACCTAATCCATA TAACTGACATCACCTAGTGAGAAAATGCTCGGTTGCTGTGTTACTGTTGGTATTGTAAGGAACTATTTCCTTATAGGATT TTTTCTATACTTTTTATTGACAGTTCTGAGAGAGATGATTCAACTTATCCCATGGATTTCTTTTTAGACTGATAATGCCT GTTAGTGAAAGTCTTTTTTCTAATCTAACCTGAACTTTTATATGCTCTTCATGCCTTAAATATAAGCATGCACTTTTTAT GATGCTTTAAACATTAGTATGCAGTGCATTAGTTCCTTTGCAATCCAAATTTTATTAATTATGGTGTGTTTAGGTAAACA GGTTAATTAAGCGATTTTGATAAGTTAAGAAATAGCTTATATATGTTATAGTGGA
CDS sequence (LotjaGi5g1v0259100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCTTGGGGCGGTATCAGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTTGGCAGAAGCAGTGGCAGGGATGC GGAACTTCTTAAATCTGTGACACGGGTTAATCAGTTGAAGGAGCTAGCACAACTGTTGGATGCGGATATATTACCCTTGG TTGTTTCAATTTCTGGAAGAGTTGGTTCTGAAAACCCAATTAACTGTGAATTCAGCAGTTTAAGAGGCGCAATAGTTGAA GAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCGGCTCTAATGCTATCCATGAG TAAAGAAGTTCCTTGGTATCTGGAAGATGGGACTGATCGTGTGCATGTAGTTGGAGCTCGAGGTGCCACTGGTTTTGTAT TACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGAACATTGGACTATCTGCAAGGTCTTAAG ATGCTTGGAGTTAAGAGAATTGAGCGGGTGCTTCCTATTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGA TATTGGGACCGTTCGAATTCAGCGACCCTACAAAGGGCCCTTCTATGTCACTCCAAAAACGATAGATCAACTCATTGCAA ATCTCGGGAAATGGGCAAGGTGGTACAAGTATGCTTCAATGGGCTTGACAGTGTTCGGTGCTTATCTAATAGCTAAACAT GCTATTCGGTACATCTTGGAAAGACAGCGCCGCAACGAAATGCAAAGAAGGGTTCTTGCTGCCGCTGCTGCTAAGAGGTT GGGACACGATAATGAAGGTGAAAAGGCTGACGGCTTAGTAGACAGTGCTAAAAGGGAACGCTTAATTCCAGATTTGTGTG TAATATGCCTTGAGAAGGAATATAATTCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGGTTGCTCTTCACAC TTGACCAGTTGTCCTCTTTGCCGGCGACAGATAGAGAAGGTCGTGAAGACTTTTCGCCATTGA
Protein sequence (LotjaGi5g1v0259100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLDADILPLVVSISGRVGSENPINCEFSSLRGAIVE ETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLEDGTDRVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLK MLGVKRIERVLPIGTSLTVVGEAAKDDIGTVRIQRPYKGPFYVTPKTIDQLIANLGKWARWYKYASMGLTVFGAYLIAKH AIRYILERQRRNEMQRRVLAAAAAKRLGHDNEGEKADGLVDSAKRERLIPDLCVICLEKEYNSVFVPCGHMCCCTGCSSH LTSCPLCRRQIEKVVKTFRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 307 | 307 | 1.6E-158 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 220 | 196 | - | – | |
| Pfam | 85 | 233 | 149 | 2.2E-36 | ||
| Phobius | 221 | 246 | 26 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 247 | 340 | 94 | - | – | |
| Gene3D | 269 | 339 | 71 | 2.5E-17 | ||
| Pfam | 291 | 334 | 44 | 7.7E-14 | – | |
| CDD | 292 | 331 | 40 | 2.31764E-21 | – | |
| SUPERFAMILY | 292 | 334 | 43 | 2.0E-7 | – | |
| ProSiteProfiles | 293 | 328 | 36 | 11.412 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Organelle organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi5g1v0259100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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