Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0265000 |
Transcript ID | LotjaGi5g1v0265000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | ABC transporter C family protein; TAIR: AT2G34660.3 multidrug resistance-associated protein 2; Swiss-Prot: sp|Q42093|AB2C_ARATH ABC transporter C family member 2; TrEMBL-Plants: tr|V7BS39|V7BS39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0265000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57546307..57552574) extracted from Lotus japonicus Gifu genome v1.2.
ACAGAGCATAGCTCGAGAGGTGAAGCGCTTGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGAGAATCATTGA ATGGATTGTCAAGCATTCGCGCTTACAAAGCATATGATAGGATGGCACAGATCAATGGAAAATTCATGGATAACAACATA AGATTCACTCTTGTCAACATTAGTTCGAACCGGTGGTTGACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTT GATAGCAACATTCGCTGTCCTGCAAAATGGAAGAGCTGAAAACAAGGCCATGATTGCGTCTTCAATGGGCCTACTTCTCA GTTACACTTTGAACATAACAAATCTCTTGAGTGGTGCCCTCAGACAAGCAAGTAGAGCTGAGAACAGTTTAAATGCGGTT GAGCGCGTTGACACCTATATAAATTTAGAATCCGAGGCTCCAGGTATAATTGAGGAAAACCGTCCACCACCAGGATGGCC GACAACTGGATCGATTGAGTTTGAGAATGTTGTTCTCACATACAGGCCTGAACTTCCTCCAGTCCTGCATGGAGTGTCTT TCACAGTATGTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCACGCTTAATGCGTTATTC CGGATTGTGGAACTACAAAGAGGAAGAATCACTATTGATGGTTGTGATGTTTCGACGATTGGACTAGAAGATCTGCGAAG AGTTCTCACCATCATACCGCAATCGCCAGTTCTATTCTCTGGTATGCACTATATAACCTGAAATATTGTTCTGTCATATC TAGATAATCAAGCATGTGTTTAATTTTAATCCACTGCCAGCAAGGCTTTTAATCAAGTCTCATTACAGGCCAATCCAGAC AAAAAAATGTCGTAGACTTGTAGTACCTAGATGTCTATGATGCATCAAGTGACACTAACTGAGATTGAAAATTTAACTGT CCATGTATAATTTTTACACTATCATCTAATCACACATTAGCACATTATTATAAAACAAGTTTCAAGCAGTTATTTTTTGT ATTCAAACTCTCTTAGTAATGTAGCAATAGTTGAAATGATGATAGTGTAAAAAATATGACATTAAAGATCAAGGTTAAAT CCTAGAAAACTTATGTTCTAGCTCAGTAATAATCCGGGTTATTAGTCCTTTTCTTGGCCAAAAAAGAATACAAGAATTAT GGCATTTTTTATTGTAGTGTTTTAGGTTTTCATTTAAGTTGTGGATAAGCATTTTCCAATAACTTCACTATAACTTTTCC GTTCTGAAAATCATTAATCTTTCTCTTAGGAACTGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC TATGGGAATCTTTAGAAAGGGCGCATTTGAAGGATGTAATTAGAAGAAATCCACTTGGCCTAGATGCTCACGTATTATGG TATAATTTTAGTCATTGAAGTTTCCCATATATACAAGAAGTATAAGTAGATATAGATGATATTTGAACATGTTTTTGCAT ATATAGGAGTCATCAAAACTTTATGAAGTGAATCTTATTCAAACAGTCTAGTTCAACTGAAAAATAGTTGGAAATGTATG ATATGTTTTGTGTGAATTGGTGTTTCTTGGAGTGTTTTTGAATTCTCAATTGAAAAGAATAAATGTAATCTCTTCTACAC TTAATTAAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTCATAAGTCTAGCAAGAGCATTGCTACG ACGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATCCAGAAAACTATCC GACAAGAATTCCAGTCTTGCACCATGCTGATCATTGCACACAGATTAAATACCATTATTGACTGCGATCGGATTCTGTTG CTTGATGCTGGCCGGGTAAATTCAATTAGCATAATTTACAGATGTTTAATTCCTACATGCTGTAATTATCATTGTTCCAT CTGACCATGAAGGAGATCTAGAAATCAATTGGTTAAAATATGTTTTTCCCTATATATGGCACTTATAACTGGTCCTCACA CAAAAAGAGTTTTCAATTTAGTGCCTATATGTACAACTAGAACTGTTCATGGTTCGGTTCTTTGCTTGAACCGAACCGAA CCGAACCTGAACCAAAAATTTGGTTCGAGAGAACCGAACCGAACCGATATAGTATGGTTCGAACCGAACCGAACCGGTTT TAAGTTTCGGTTAACCGGTTCGGTAAAACGGTGAACCGAACCAATTTTTTTTTTTTTTTTTCAGAATCAAAAAACTTAAT ATTAATTCAGGAGAACCGAACCAGTTATTTTTTCAGAACCATTAAAATAACTCAATTAAAAACAAGTCAAATGATACTAC ATAAGAAGAACAAGTCATTTTTTACTTTTGATAAAAGTAACTTTTCCACCAAAGAGGATTAATTGTCAACTACCATTAAA AGATATAAAACAAAAGGCCCAGAAGTTCAGTATGAAACAGTGGACAATGTCAATTTAAGTGATAGTATGAAACAGTGGAC AATGTCAAATCCCAGAAAATATCAATTAGTAACAAATGGAAGAAACAGTAGCAACTCTCTTCCCATCTTCCTCCACTCAG CATCTTCTCCAAACCTCCCAATTCCTTTCACTCTAATCATCAAAACACAAAGCACCTGCACATTAAGCAAATAGCATCTT ATGAGAAACATACATGCAAAAAATGTTCTTATTCACACACACACACATGACTAATTTACTGAGTTACTTCGCCCCCTACA AAAGCTACTTCTGTCCCCAACACAAAAACCTTCTCATATTGTACAGCTGCCTCCAACATTGTGTATGTTGAATTCCACCT AGTATCTGTATCTAAACTCAGCATACCTTTGTATGATATATGCACACTTTCAGCATAGCTCATGAATTTAAGAAATCTTT TAGTAGAGCACTTCATATATCTCACAGCATTTCGAATCCTCAAAATAGAAATATCAATCTCTTTCATACCCTCTTTGACA ATCAAGTTGAGTATATGTGCACAACAACGCATGTGAAGATACTCACCATTCAAAATCACCCTGTTCAATGGCAAGAAACT ATTTCTAAGCTTGTCAATCGCAGAATCGTTAGATGTAGCATTGTCCACAGTTATAGTCAAGACTTGACTTAGCTCCCACT CATTCAGAAACAACTCGACATTGTTAGCTATAACCACTCCAGAATGTCTCGTAACTTTCCGAAAGTTTATAATCTTTTTC TGCAAGTTCCAATCATCATCAATAAAATGCGCAGTCAAACTCATATAACAATAATTCTGCACAGAAGTCCATGTGTCTGT TGTAAGACACACCCTACCACAATGTTTGGACATGAACCTTTTCAACATCACTTGTTCGTCAACAAACATTTTTTCAATGT CCCTCCTCAGAGTAGACCGTGAAATGACAACAAATCGCGGTTGTAGAACACTTAGAAACTGGCGAAAGGCTTCATTTTCG ACAAACCGGAATGGAAGCTCAGCAGCAATAAACATCCTCACAAGTTCTGTTCGGCATATATCTTGGTCAAACTTAAAGAC CGTAGGCGAAGAAACAATGCCACTTCCTACTTGTCCTTCTGCAGCCTGCGGAAATGGACCATCTTTTCTTCTCTTATTTT TTTCACTGCCTGGATATTGCAAGCATCTCGTCAAATGGGTCCGCATAGTACTTGTTCCATTCCTACTAATGAGAGTACCA CAGTAGTTACACGCAGCCCTTCTCTTATCATTAGGTTGTTGTGAAAAGTGGAGCCACACTTCTGAGGGTTGTTTCCTTTT GCCAGTTGATGTGCTAGGATGTGGTGGGAATGTAACATCAACTCCAGTGTTAGTAACTGGTGTAGAAAATATTGAATCTT GCATAGTTTCTTGGAACTCGGAATCCATCTAAATATCAAACTGACCTGAGATTTTGCAGCTAGGACTTGCTCAAACTGTT TCACAAGCTCTGGAGGAGAAATTGTGTCAATCTCAGCAGCAAGTACAGCTCTAACAAAGCATCTGGGACTTCAACCTGGC AAATTTACGCAAATGAGACAATGAACTCAACATGACTGTAAATACTAAATATCAAAAGCAGATCTACCAGATAAAAACAA TATTAGGTACAATGGTACATAATTAAACAATACTAGGATGTTCAATTGATATATACTTATAACATAACATATAGCAACCC CCCAATGTCAAATAACAACCGAAAGGAAAGCTACATTCAGGGAGCTTATTAACATGTTAATTACAATTAAGGGTGCAGTT CAATTCAGCTCAAAAGTTAAATTGGTTTTTGAGCCAATAATTAGAGCATCACAAACGATTATAGAAAAGCAATCATCAAA TAATCAGCAAAAATGAACCAAACCCAGATCAGAAACTACAATGAATAGATAATCAAACAAATAGAAAGCTTACCTACGAG TCTACGACCTCAGATCACCTACGTTGGAACGTCGCTGTTGGTGGGAAGAATCTGAGCTCGGTGGTCAAGGTGACGGCGGT TCTGCCGTGCTGGCCGTGTTCAAGGTGACGGCGGCGCGACCGGAAGGAGGAGGAGGAGGCGCTGCCGGAATGAGGAGGTG GCGCGGCGGCCGGCGGGAGGAGCAGGAGGCGCGGCGCTGAAATTAGGGTTCACTCATCACTGGTTCTCACTTCTCGGTTC TGTGGTTAACTGGTTATCCGTTATTGGTTGTGTGGAAACAGGATAAATGGATATATCGGTTCGGTTCGGTTACCGAACCG GTTTTGAGATTTTGGTTCGGTTACCGAACCGGTTTTTAAATTTAGGTTCGAGTTCGGTTCGGTTCTTAACGGTTCGGTTC TTAACGGTTCGGTTCTTAACGGTTCGGTTTTCGGTTCGGTTTTTGGTTAGCTTCGGTTCTGAGAGAACCATGAACAGTCC TATGTACAACCTCCATCTTTGGTATTGTCCCAGCTGTCTATGGCTGTTATACCACTACGAGATTGGCATTGAACTACCAA GAAATACAGGGACCAAATTGAAAATGATTGTTACATGTAAGGACCAAGATATTTCTAGTCCCAACACCTGACACTGATCT TCAATTTTCTCCCTTTGCACTCCGTTAGGATGGTATATAATTTCTCAACATGGAATTATAGATCATATTTAAAACAATTT TTCTCACAATATGGATTAGGCCTAACTCTACCTCAAAAGCTAGTTTAGGAATGAGGATTGTCTACCCTTTTATAAGGACT ACTTTAGCCATATCTCTAGTCAATGTGAGACTTTTTAACATGCCTCTCACACCTAGGGCTAGACATGGAATGAACATTTG TGGTGACCCATATTTGAGAGGTCTCTAATAAGTTGATGTAGGATAGACTTCGATATCATCTTAAAATTTGCGTTAGATCT GACTCTATCCCAAAAGCTAGCTTAGGAGTGAGATTTGCTCCCTTTATAAGGATTATTCTGATCATATCTATAATCAATGT GAGACTTCTAAACAATTTTACATGCCATAAAGATTTGACAAGGTTTTTTACTTTGACTTTATCTTTTCTGAGTTTGCTAC TGGCTATGTTAATGCCTAAAAACATAGCTATAATTATGCATATAGGACTAAATTGAAAACTTTTTCACACAAGGACCAAA TTAAGAATGAGTGTCATGAAAAAAGGACTAAAAGTACATCACCAAATGATTTTAAGCATTCTACATGGAGTGGAATTTTT TTCCCAATCAAATTAGTCAACATTTGATAATCCAATATTAAGATTCGTCTTTCTTTCGTATACTTTCCAGGTTCTTGAAT ATGGTTCACCAGAGGAGCTCTTAAAAAATGAAGAAAGTGCATTCAATAAGATGGTTCAAAGCACTGGACCTGCAAATGCT GAGTATCTATGTAGCCTAGTGTTTGGAAGGACAAAGAACAATTCTGGTGAATATAACAAGGGGCAAGAAAGCCACACAAG ACAGTTAGTTTTTACCCATTGGGCTGCTGCTACCAAGTTTGCCATAGCTTCTACCCTTTCTTCTTTACACAATAACCTTC AAAAGCCTAGTTCTAAGGAGAATAAAGATTTCCTTGATGAAACAAAGGATGCAGTGACAACACTTCAGGAAGTTCTAGAG GGGAAGCATGATGAAGCCATAGAGGAGACACTGACTAAATACCATGTTCCAACATATAGATGGTGGTCCACCCTCCATCA AGTTATTGAAGGTAAACATACATAATCA
CDS sequence (LotjaGi5g1v0265000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAGATCAATGGAAAATTCATGGATAACAACATAAGATTCACTCTTGTCAACATTAGTTCGAACCGGTGGTTGAC CATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTCGCTGTCCTGCAAAATGGAAGAGCTGAAA ACAAGGCCATGATTGCGTCTTCAATGGGCCTACTTCTCAGTTACACTTTGAACATAACAAATCTCTTGAGTGGTGCCCTC AGACAAGCAAGTAGAGCTGAGAACAGTTTAAATGCGGTTGAGCGCGTTGACACCTATATAAATTTAGAATCCGAGGCTCC AGGTATAATTGAGGAAAACCGTCCACCACCAGGATGGCCGACAACTGGATCGATTGAGTTTGAGAATGTTGTTCTCACAT ACAGGCCTGAACTTCCTCCAGTCCTGCATGGAGTGTCTTTCACAGTATGTCCAACTGAGAAGATAGGGGTAGTTGGAAGA ACTGGTGCAGGAAAGTCTAGCACGCTTAATGCGTTATTCCGGATTGTGGAACTACAAAGAGGAAGAATCACTATTGATGG TTGTGATGTTTCGACGATTGGACTAGAAGATCTGCGAAGAGTTCTCACCATCATACCGCAATCGCCAGTTCTATTCTCTG GAACTGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAATCTTTAGAAAGGGCGCATTTG AAGGATGTAATTAGAAGAAATCCACTTGGCCTAGATGCTCACGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAG GCAACTCATAAGTCTAGCAAGAGCATTGCTACGACGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATG TTAGAACAGATGCCCTTATCCAGAAAACTATCCGACAAGAATTCCAGTCTTGCACCATGCTGATCATTGCACACAGATTA AATACCATTATTGACTGCGATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATATGGTTCACCAGAGGAGCTCTT AAAAAATGAAGAAAGTGCATTCAATAAGATGGTTCAAAGCACTGGACCTGCAAATGCTGAGTATCTATGTAGCCTAGTGT TTGGAAGGACAAAGAACAATTCTGGTGAATATAACAAGGGGCAAGAAAGCCACACAAGACAGTTAGTTTTTACCCATTGG GCTGCTGCTACCAAGTTTGCCATAGCTTCTACCCTTTCTTCTTTACACAATAACCTTCAAAAGCCTAGTTCTAAGGAGAA TAAAGATTTCCTTGATGAAACAAAGGATGCAGTGACAACACTTCAGGAAGTTCTAGAGGGGAAGCATGATGAAGCCATAG AGGAGACACTGACTAAATACCATGTTCCAACATATAGATGGTGGTCCACCCTCCATCAAGTTATTGAAGGTAAACATACA TAA
Protein sequence (LotjaGi5g1v0265000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNGRAENKAMIASSMGLLLSYTLNITNLLSGAL RQASRAENSLNAVERVDTYINLESEAPGIIEENRPPPGWPTTGSIEFENVVLTYRPELPPVLHGVSFTVCPTEKIGVVGR TGAGKSSTLNALFRIVELQRGRITIDGCDVSTIGLEDLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWESLERAHL KDVIRRNPLGLDAHVSEGGDNFSVGQRQLISLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRL NTIIDCDRILLLDAGRVLEYGSPEELLKNEESAFNKMVQSTGPANAEYLCSLVFGRTKNNSGEYNKGQESHTRQLVFTHW AAATKFAIASTLSSLHNNLQKPSSKENKDFLDETKDAVTTLQEVLEGKHDEAIEETLTKYHVPTYRWWSTLHQVIEGKHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 25 | 25 | - | – | |
PANTHER | 1 | 398 | 398 | 9.9E-197 | – | |
PANTHER | 1 | 398 | 398 | 9.9E-197 | – | |
CDD | 5 | 99 | 95 | 7.14586E-22 | – | |
SUPERFAMILY | 5 | 105 | 101 | 3.14E-7 | ||
TMHMM | 25 | 47 | 23 | - | – | |
Phobius | 26 | 47 | 22 | - | – | |
Phobius | 48 | 58 | 11 | - | – | |
Phobius | 59 | 80 | 22 | - | – | |
Phobius | 81 | 480 | 400 | - | – | |
Gene3D | 109 | 361 | 253 | 6.9E-91 | – | |
SUPERFAMILY | 115 | 357 | 243 | 3.83E-75 | ||
CDD | 123 | 343 | 221 | 5.56409E-139 | – | |
ProSiteProfiles | 125 | 359 | 235 | 18.541 | ||
Pfam | 142 | 290 | 149 | 6.4E-28 | ||
SMART | 151 | 344 | 194 | 3.6E-12 | ||
ProSitePatterns | 262 | 276 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi5g1v0265000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…