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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0266100 |
| Transcript ID | LotjaGi5g1v0266100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin; TAIR: AT5G10530.1 Concanavalin A-like lectin protein kinase family protein; Swiss-Prot: sp|P19664|LEC_LOTTE Anti-H(O) lectin; TrEMBL-Plants: tr|D0VWW1|D0VWW1_LOTTE Lectin; Found in the gene: LotjaGi5g1v0266100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57781869..57783520) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATAAGTGTAATCACAATGCATAATATCATCCATCAACCACACATTGTAATCAAGAAAACACATAACCATGGCCAC CCTCTACTCAAATCCTTCAACTCTGAAAGTTGTTTTAGCAAGTTTGCTTCTCTTGCTAACCATTAAGGTGAACTCAGTAG AAGGAGTTTCCTTCAACTTCACCAAGTTCACTGATGATGGTAGTCTAATTCTCCAAGGTGATGCCAAGATTTGGACTGAT GGGAGGTTGGCCCTGCCCTCTGATCCATTGATTGGCAAGACTACAAGCCGAGTCTTGTATGCAACACCGGTGCCCATTTG GGATTCAACCACGGGCAGTGTTGCAAGCTTTGTTTCTTCCTTCTCTTTTGTTGTGAGTGATGTCCCCGGTTATAAAATAT CTGATGGACTTGTTTTTTTTCTTGCACCGTGGGGGACTACAATCCCCCCCAATTCAGAAGGTAAGAATCTTGGAATCCTT GATGAAAAAAATGGTTACAATCAATTTGTTGCTGTAGAATTTGATTCTTACAACAATACAAGGGACCCAACATTTAGACA TATCGGAATTGATGTCAACTCTGTAATGTCAATGAATCTTGTAAAATGGAACAGGGTTTCTGGAGCACTGGAAAAAGCAA TCATAATATATGACTCTCCAACTAAGACATTGAGTGTTGTTGTGACACATCAAAACGGTCAAATTACCACTGTTGCTCAA CAAATTGATTTGAAAGTTGTGCTTCCAAAGGAGGTTAGTGTTGGTTTTAGCGCAACCACGTGGAATACCCACCGTGAGAG ACATGACATCCATTCATGGTCTTTCACATCAACCTTTGAGACCAACTACGCCACTGAGGAGAACATCCATATTAATCACA GCTCTGCTTGATTTATGTTGTTTATCGAGGTGGTGTTGAGTTCAGTATATGAAATCTTAAATAAGGACCATGCATGAGCA TGAGCATGAGCATGAGCAACGTTTATGTATATATGTTTGTGTTGATGTAATCCTATGTCACTTCTCTGTACTAAGTGCTC TTCTCGCTAGCTAGCTTGGATGAATACAAGTTTAAATAAAATGTTCAGTTTCAATTCTGCATGACGAACCAGGAGCTGCG AGCTTTCGTTCAATTCTCGTTGTTCTTCTGAGAGAGAACATCGACTCTTGAACAAATTTTCGTTTTGAAATTCCAATGAA GAGTTCTGTTATTTTATTTTTCGTAAAAAAAATTAAATCATTTCTAAGGCAACATGTTGAGATGTTGGTCAATATAATTT ACAAGGAAACAATTCATACGTGTTGCCATTTATAGTTTAGGGAACACTTATTAAGGGTTAGGATATCAGTGTTGTATAAA ATTCAATTTTTATGGTAACAACGAAGAATTGTAAGCTATTACTATTTTACGCAACACTTTAGGACTGATGCTAAAAAATG TGTTGCTAGAAGCACAAAATGGTGTAGTGTTAATGGGAAGCATAATGGCTACTCCGATCCAAACCTAATAGAAAAGAATA TGATAGCTGAGTAAATCAGATTATTAGCCAACAAAATACATTATCACTTCACTTTGGACTTTAAATATCAGGAATTGGAA AGAGAAATATAAAAAGAATGTGCATGCACTTAATCTATCATTTGTATCCAGT
CDS sequence (LotjaGi5g1v0266100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCCTCTACTCAAATCCTTCAACTCTGAAAGTTGTTTTAGCAAGTTTGCTTCTCTTGCTAACCATTAAGGTGAA CTCAGTAGAAGGAGTTTCCTTCAACTTCACCAAGTTCACTGATGATGGTAGTCTAATTCTCCAAGGTGATGCCAAGATTT GGACTGATGGGAGGTTGGCCCTGCCCTCTGATCCATTGATTGGCAAGACTACAAGCCGAGTCTTGTATGCAACACCGGTG CCCATTTGGGATTCAACCACGGGCAGTGTTGCAAGCTTTGTTTCTTCCTTCTCTTTTGTTGTGAGTGATGTCCCCGGTTA TAAAATATCTGATGGACTTGTTTTTTTTCTTGCACCGTGGGGGACTACAATCCCCCCCAATTCAGAAGGTAAGAATCTTG GAATCCTTGATGAAAAAAATGGTTACAATCAATTTGTTGCTGTAGAATTTGATTCTTACAACAATACAAGGGACCCAACA TTTAGACATATCGGAATTGATGTCAACTCTGTAATGTCAATGAATCTTGTAAAATGGAACAGGGTTTCTGGAGCACTGGA AAAAGCAATCATAATATATGACTCTCCAACTAAGACATTGAGTGTTGTTGTGACACATCAAAACGGTCAAATTACCACTG TTGCTCAACAAATTGATTTGAAAGTTGTGCTTCCAAAGGAGGTTAGTGTTGGTTTTAGCGCAACCACGTGGAATACCCAC CGTGAGAGACATGACATCCATTCATGGTCTTTCACATCAACCTTTGAGACCAACTACGCCACTGAGGAGAACATCCATAT TAATCACAGCTCTGCTTGA
Protein sequence (LotjaGi5g1v0266100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLYSNPSTLKVVLASLLLLLTIKVNSVEGVSFNFTKFTDDGSLILQGDAKIWTDGRLALPSDPLIGKTTSRVLYATPV PIWDSTTGSVASFVSSFSFVVSDVPGYKISDGLVFFLAPWGTTIPPNSEGKNLGILDEKNGYNQFVAVEFDSYNNTRDPT FRHIGIDVNSVMSMNLVKWNRVSGALEKAIIIYDSPTKTLSVVVTHQNGQITTVAQQIDLKVVLPKEVSVGFSATTWNTH RERHDIHSWSFTSTFETNYATEENIHINHSSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| PIRSF | 3 | 262 | 260 | 1.0E-84 | ||
| PANTHER | 11 | 258 | 248 | 1.8E-74 | – | |
| PANTHER | 11 | 258 | 248 | 1.8E-74 | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 272 | 244 | - | – | |
| SUPERFAMILY | 31 | 259 | 229 | 3.12E-63 | ||
| Pfam | 32 | 262 | 231 | 1.8E-54 | ||
| CDD | 32 | 255 | 224 | 5.05539E-65 | ||
| Gene3D | 32 | 261 | 230 | 3.4E-68 | – | |
| ProSitePatterns | 146 | 152 | 7 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi5g1v0266100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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