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LotjaGi5g1v0268100.1

Overview

Field Value
Gene ID LotjaGi5g1v0268100
Transcript ID LotjaGi5g1v0268100.1
Lotus japonicus genome version Gifu v1.2
Description Transmembrane fragile-X-F-associated protein; TAIR: AT1G68820.1 Transmembrane Fragile-X-F-associated protein; Swiss-Prot: sp|Q7M3S9|RNGB_DICDI RING finger protein B; TrEMBL-Plants: tr|I1LCS2|I1LCS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0268100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:58039915..58048146) extracted from Lotus japonicus Gifu genome v1.2.

CTTTTCTTAGCATAAACCTCACATAGTGGGGATATTTTAGTCCATCACCATTATTCTCTCTTTCTCTCACTCAAAACATA AAGATAATTAATTTGATATTTAAAACCATCACTTTGGCGTGAGATTGAAGGTAGTGAGAGAGAGTAAATATTTATCAAAC AAAACAAAAAACAAAAAAAAAGTTGTAACGTGTAGACAGAGGTTGTTGTTCCAAAGTCACAGTCTTTGCAACCTCCGAGG ATTCATCTTCTAAGAATTTTGGTCCATCACCAAGGAAGATCGACCTAGCTAGTTGCTAGATACGTGTGTTCCTGTCTCTC CGTGTCAGCACCAGCACCAGCTGTTTCTCTCTCTCTGTCTGCAATTCGTTTCTGCAAACAAAAATGCTGGTTCAGAGAAG GGTCATGAGTTGGAGAAGGGTCGCCAAAGCCTTCCAAGCTCTGCTAGCTCATGCCTTGCTCTTCTGCTTCACTCTTCTTC TTGCTCTCAAGCTTGATGGGACCTTGCTTTCTTCATGGTGGTGAGTTTTATCACTTTTTCTTGTTTCATTCACAAACATG TACACTTTTTTTTCCTTTCAAATTTCACCTTCTTTTGTGTTACCCAGTTCAGTAAATTTGAAAATGAATCAAAGGTCATA ACAAAATCTTAGCTTTTTCAATTTTTCCTTTGATGCATCATGTCTAGCTTCGTTCTCAAGTATTGAGTTATTTTATTTTT GGGTGGTAGACATTAGACAAGGTTAGGTGCAGGTGATGATTTGTTTCCCCTTGTGTTTTTTCAATGCATGTGTGTTTGAT TCTTGTTTTTGGTAATTTCTGGAGAAAATAGCAATTGAGAACACAGATGGATTTTTTTCTCCTTTTAGAAAAGAATCTTT GCTTCCCTTGTTTGCTGGGTATTTTGTTTCGTGAATCTATTTATCATTATAGTTTGGTTTTCTTTTCCTTTGGAAATTGA ATGGGATAGCTTCCAGTTCAAGTTCTCTGTTGCTTGCTGTTTGTTGATTTGTGATGTGATGTCCCTTTCTGAAGCTGAAA TTTTTATTTTATTTTTAATCTTCTTTGTGGAGTCCTATGCTTTAATGTCCTGATTGTCCTCTGCCCCATGGAAGTGAATG GAGAATATACTTGTTTCATTGAGGAGTGAGGATTCAATTCGTTTATGAGAAGTGTGAAATATAATTTGTATTTATTTATA AGCTAAGTTACTGTCCAATTACATGGTATCATAATTCTACTGACCACTGGTGTTGGTTCATATAATAAGGATGGGGTACT TTGCTTTAAAGGCTTAGGCTCAATTGTCTCACTAATTAATAGCAGTTATGGTGGGTGGGTGGGTGCTACTGTTCTCAACC ATATTGTACAAGTGAGAAGAATCAACAACTGATTCCAAGTTGTGGATTGTTTTTAAAGATGAAATGATTAGTCTTATGAG TTGTGAATAATTGAATATGATGCATTTGTAATCTTATGATTTGTACATGAGTCTATAGGGTTTTATCACTTTTATGCAAA TTAAGTTTAAGTCTTAGCAATAAGATTGTTGCTTTTTCCTTTCCCACCCTATAACATCAGGCTGAGGCTGAGAACAACAC CATCAAATTTGTCACACTGAATCACAATTGGGTATGTGTCATTTTATTGTTGATGCTGCCCATTTGTATTATGCTGAACA GTGAATCAGACATAGACCGTTGATCATTCTATGTAAATCAGGGACTACTGCCTCAAATCTTATCAAAATATTACGGAGTG GATAGTAGATCTTAGGTCGTATGTTAAAAAGAGGAAATAGATTAAGCTAGAGCATTCTCTTCCCTTTAATAGTTAGGTAT ATCATGACATATCTTTCTTGTTGGCAGGACTGTATTTTTTCCTCTATGGCTTTTTCATGCTGTGGTGGCTCGAGGCCGAT TTTCATTGCCTGCTCCTTCAATGCCTCATGGTCGCCAAGTAAGATATACTTGGAAAATATTTTCCGTGTTCTGTAGAAAA ATAGAAGTATATTTTGTAGTCAGTTTTGTTTCTCAAATAGAATGAAATTGTTTATGGCAGTGGGCTCCTTGTCATTCAAT CATAGCAGCACCTGTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTCAGCAGCAGTTATGGTAAGCAACATTTCT TGTGGCTCAACTAATACAAAATTTATTGACCAGTATATCTTGACATCATGATAAATTCGATACTTCTTTTATGAGTTATC GAATTAAGATCATATCAGTTTAAACAGTTACCCATTATAATGATGCAGACGTGAATTTAAAGATTGTATTCATACCTCTG ATAGCTTTTGAAGTGGTGATTTTGATTGATAACGTCAGGTAAATTATCCTGTTTTATTTATATAAGCTTACCAAAATTTA TGTTCTATTTGTTCGAAAAGAGCTCGCACTCATATTTAAACTCATTCATTGTCATCCATCTACTGTAATATCAACTGGAA CTGTCTAAAAAATCTGGTAATGGAATTGCAACAAACATTGCACATCATCTAACAAGTTTCAAAGTAACTTGCATTTTCTT GGGTATGCTTTCAACAAATCATTTTGATAGTTGGGAAATGTCATATCTTAACTGTATAGCTTGGCATGATTGGGTTTGGT ATTAATCAAATATATTTATACCAGCTGCAAGTTGCGATACTATTTGATGCTCTTTTATCAAATGATGCTTTATCGACAAC AATGTCTTTTTATAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATTTGACCGACGAAGCAGTATGGGAAACTC TTCCTGTAAGATATTGTTCATCAGTTGATTAGTTGATTTATTGGTGACATGCTTTGAAATTGAAAAAAAAGTTAGGTATA CGTCCGAAATAGGCACTTAATTCTCTCTACTGGCATCAGTGTGGACATTCAAAATACTCATTGTTGATGGATTTGAAGTA ACTTTTGTTGAAATCCGTGGGGAACTTTTGAGTGTAATAATGAGGGGGGGGGGGTGAAATACAAAACAACCATAAGATTA TAATTATATTCATAATTTAAAAGCCTTCGATTTGATGTGTACGACTCTAAATGGTACTTTAGCAGTATGAGGTCTTAAAC CACACCAAATCCATGTTGGGGCTCTCAATCTCATAACAATGTCAATGGTTGTTTGTAAGCACAATGAGTCTTGCAACTGT CTATAGGATATCTATCTTGTGCCTCCACACCACAGTTATTTCATTTAGCCTTTTGTATGCCTTATGCCCTGCATTGAGGA GGTCGTATAATAATCATGAGCTTTCTCTGTATTTCATTCTTCCTTCCTGAAAGCAATCATTTGTAGGGAGGAAAAGGAGG ATTAACCATACTCATTGTTATCAATTCAAGTCTTATCTATGACAAAGTCAACTTTTTAAGTGTTATACTCTATAATTTAT GTGATCTTTCTTTTTTTCCCCAAAACGCTAAATACTAAATTGTATAATTCTGTTTTCTAGCACTTCTGGATTTCAATATC CATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTCCTAAAGATATGTGGTGAGTTTTAATTTTCTCCTGAAAACAATT GTTGATGGTGTAATTAACTCCTATTCTGCCTGGTTTCCTTTTTTGCTTGGCACTGCTTCTTACTGTTGGAATGTAATGTT ATAGACTCCATTCCCCACTTTTTCTTGACCCCTCTGCATCTATTTTGTTTCTCAGAAATGTTTAGTCAGATTTTGCGAAT GGTATATTTAGTTCATTCTTGTAAAATATACGGGGATGAGATGTCATAAATACTTTTTAAAGTATCCCTCTGATTAAACT AAATAGTAATTGATACTTTGTGAAGAAATAAAGGACTTAAGAGAGAAATTGTCTGACAAGAACGCATTCTGACACTGACA TTGATGTCAACATTGATGATTATACTATAGCAAAGAGTACAGAGAGACAATATCTGAGTAGGGCACACCGCAAGAAATAC TTGGAGAAACAAAAACATACTAATAAATGCAACATACTAGTAAAAGTAGAGATTCAAACAGTTTTGGTTCCAAGAACAGA AAAGAGTATATAGATGATATTCCCATGTGTTTCTGTCAAATTGGTAAACATTTATAAATATTGCTATTTCAGGCAAGCTG TATTATCTTTTTATTCTTTCCCAAAAAGTGAGGATTAATTAGCTCATCAGTAATATAGAAAAACAAGGTCAATAAATATC TATGGAACTGAAGATATGCACTATACCTGATTTGCAGTGGTGTGATTTCATGCTCTTCTGTGTTACTTTGATCACATTCT TCGTAAAACTCACTGTCTGACTATGACTGATACACCATAAATTTTTTTATCACTAACTTTCTTTCAATTACTTGCAGGTG ATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGGGTATGATCAATATGCCATGGTAGACTGTTAAACATTT GGCATCAGTCTTGTGCCTGTTCCTTCATAAATTCCTTGCTTCCTTTTGCAGCATTGCACAGTGCTTTGCGTTTCTTGTTT GTACGAAGTGGCACAATCCAACAATTCATGGAAGCTGTCAGATTACCGAACCATGTTCGTCGTCGAATTCCATAAGATAC CTGGACTGGAGTAGAGGAGGCATAGTTGTTTCTACAGATGAAGATAGGCAGCAAAATAGGTTATGCAATCTGCAGGACAT TGGCGGGCATATTATGAAAATTCCATTTGTTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGTATGATAGATGCTGA TGAAAAAATCTTATCTTTATGTTCTCCGGATTTGTAAGTTTCCTCATTCTTAATATTCTTCCCTCTTTCTTTGTTTAAAT TTTAGGGAACACCATCCAATGCAAAGGATATACCCAATTGGGTCATTTTTTTCCCTCTTATTTTATTGCAAGGAGCTGGG GTTTTATTTGCAGTATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACACTGGAGATATTCCTAGAAGCTACTCATC TATAGCATCTAAATCTTGTGACTGCTTCGGGTTCTTTCGTCGTGGGTCAAGGTATCAGTTTAGCTTCAGGTTCTTTGGTA TATTCACTACAGAACTTAAAAAAAAACTTCGAGAAGTTGTTGAATTGACTTGAAGATTTTGTGTCTTCGGCTGCACTTTT CCTCCTAACAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTATTGTGCTGGGAA TTCTGGGTCAGTACTCTCGGAAGTCTCAACTCTTCAAGTTTTGTGGTGTAAAATTCTATTCAAAAATAGGAAAGGAAGAA AAAAAAAAGCAAATGTTTCTCTTTGTTCTATTTCAAAGCTTAAATAGAGTTGTGGAAATGTTGTTCAATTATGATTTCAT AGTGATGATTATCGCTATGTCAATATTGGCAATTAGAATGTGCAGGCAATAAGCTGTGCTTTGTTCTTTCTCTTTGTGCT CTCAATTGGCTCTTTTGACATTGATTATCTGCATCTTACATAATTGCTATTTTGAACAGTTTATGATGTTAATCAAACTT CTCTTTGACAACCTGTTTTATTTACTATTTAGGTATAATACTTTCTCTCCTGATACGGTGAAGAAAATGCCTAGAGCAGA TCTTGTTGAGGAGGTAAGATATTGTTTTCTTATATCAAAATCTATAGCTACCACATACTTCATGCTTCATGGTTTCCTTA TTTAAGAATTAGTTAGACCAAGTACATTAAGCAGGCTTAAACTTTTTAATAACAGTTCTTAATAACTCGCAGATTTGGAG ACTTCAAGCTGCATTGGGTGAGCAGACAGAAGTTACAATATCTAGCCAGGAGGAGTATGAAAAACTTCAAAACGTAATAT TCTCAGCCTTGATAGCATATCATTTAATAGAATTTTTAAAGTGTTGTAGAAGTAAATCATTGAATAGAATAAAACAAGAG AAAAAGGATGATGCACCGACGGTGTAAAGTTTTTTTACAGCGTCAACCAATCAAATTTCAAGGATGTGTCACGTCAATTA ATGAAATTAAATAAAAAGAGAGAATTTCTCACATCCTTGAAATCTGATTGGTTGACGGTGTAAAAAAACTTTACACCGTC GGTGCATAGAAATTAAACTCATAAAACAAAGCCTCAATTAAATTTTTGCATTATATGACCCCCTATTAATGTGTTGCATT TGTTTCTTAAGGGAACAAGCATCCACAATGTCATTATGTATATGTGTGCTTGTCGGCATGCTTGGTATTACTACCAAATA AATTTGTGAGCCATCAAGCTTTGTAACTCTTTCGCAGTTAAAAGTGATTTCTATTCATTCTCACGTTGTTATTTAGTAGC TTATGTTTTTCATTGTTTGTGCTTGAATGGCCGTTTATCACATCAGGATCTAACATTTCAAATTGTTTGCTAAATCCCTC AGGAGAAGATCTTATGTAGAATTTGCTTCGAAGAGCAAATTAATGTGGTCCTACTTCCCTGCAAGCATCACATTCTTTGC AGGTAAGAGCCCTTTCTTTGCTTCATTCTAATATAATGTAGTTACATTTTCTTACTCAAGCTCATAAAAAGGAGTATGTT TGAATTATTATCACTCCCCTAGTCTCCTAAAACAATAATGAAGTTTAGAAACAAGAACATATACAATGGCAAGAATACCT TCCAAAGAGGAAATTTCCAGCTATGTGCTGCTTTTTTAAAGAATCTGTTTTTTAAATTACATGCCAACATTTAATATAGT GTTTCCTTGTTTTTGTTTCCCTCCTTTGACTTTTGATGTTGATAACAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCGA TCTGCCGTAGCACCATTGAAGAAAAGATGCCAGTGTATGATGTGTAGATTGAGTTTTGTGAAGGTGTATAGGTACCATCT AGCTTGTGGTTTTTAGATGAGGCAAGCACTGAAAATCTTTACTCATAGATATGATTAGCATCAGAAGTTGTATATAATTT GAACATTCTTCAACATGGCATTGCTGCAACTGTGGATGGTTAATCAGTTTTTGATATTTTTTTAATCATTTTGTAGATAT TTGCCCCAAAAAAAAATATTCTATTGTATTTTTCATACTACATAATATGGTATGTCCAAAAAATGTACAAATATTGATTT TAACAAAAAGTTGGTGGAGAAGTATGGTTGTGGGGGAGTATGCTCCCCTTAATACAACAGGATATATTTGTATATTTTTG TTAACTCCCAGAGTGAAGGGGGGAGAGAAAGGAAACTGATTACTAAAAATAAAGACTAGTGGAAGTCAAAAACTTGTTGA ATGTCTGGTTGAAGTTGCAGACATGCAGTATACTGTCAAGTATCAATCATTTAAGACTGGTCCCTTAAACTGGATGAAGT TTTAAATTCTACAAAAGCTTAAAGTGCATGGTTGGAAAATCTCTTACAATTGATTTCAATACCAAAAGAATTAATTTTGA GAAAAGAAAAACTGATTCAAACATATGCTAAAAGCGGGGTGATATGGAGGTTTGATAGTCATTATTTTGTTTTCTATCTC TCTCCTCTTATCATCTATCATATCTCATTTCCTCTCTTACTTTTTCTTTTCTTCTTATCTCTCATCATTCCACCTCTTTC CACCTCAAAGTGAGGTGCAACATTATTCTTTCTGATTGTGGTCATTTTCCTGTTTTCAAGTGTTACTAACGAAACACATG AATGTGACTTCTCATTAAATCACATTGAATTGCTTTAACTATGCAATCTGTGACTTCTCTTTTATTTCTTGTTTCTAATT GTAAAAGTTGACTAAGATAGCATGAAGGAAAGCTAACTCTCATATTATTATAGCATTATAGTATGTTGGCATGGTACGCC CCCACAGGATATTGACAGGGCCGGGCCAAGCGACCCAAGCAAGGGCTTTAGGCCTTAAAAAAAATAAATTTTACTAACTA AAAAAAGGCCTCATATTTTTATAAATAAGGCCTCAAATAAAAAGAAAATGCCCCATATTTTTGTAAATAAGACATGTTAA ATAAAAAAAAATTAGATAAAGAGTCCTCACTTTAAAGTTCGCTTTAGGCCTCATTGTGTGTTGGGCCGGCCCTGGATATT GATGCATACTTGCACAAATCACACCACTTGACATCTGTACATATTCTGTGCAACTTTTACTTCCCACAATAA 

CDS sequence (LotjaGi5g1v0268100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGGTTCAGAGAAGGGTCATGAGTTGGAGAAGGGTCGCCAAAGCCTTCCAAGCTCTGCTAGCTCATGCCTTGCTCTT CTGCTTCACTCTTCTTCTTGCTCTCAAGCTTGATGGGACCTTGCTTTCTTCATGGTGGACTGTATTTTTTCCTCTATGGC TTTTTCATGCTGTGGTGGCTCGAGGCCGATTTTCATTGCCTGCTCCTTCAATGCCTCATGGTCGCCAATGGGCTCCTTGT CATTCAATCATAGCAGCACCTGTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTCAGCAGCAGTTATGACGTGAA TTTAAAGATTGTATTCATACCTCTGATAGCTTTTGAAGTGGTGATTTTGATTGATAACGTCAGGATGTGTAGGGCTTTGA TGCCTGGAGATGATGAAAATTTGACCGACGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTC TTCTTTATTGCTGCCACAGTGTTCACCCTCCTAAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTAT TAACTTTGGCATTGCACAGTGCTTTGCGTTTCTTGTTTGTACGAAGTGGCACAATCCAACAATTCATGGAAGCTGTCAGA TTACCGAACCATGTTCGTCGTCGAATTCCATAAGATACCTGGACTGGAGTAGAGGAGGCATAGTTGTTTCTACAGATGAA GATAGGCAGCAAAATAGGTTATGCAATCTGCAGGACATTGGCGGGCATATTATGAAAATTCCATTTGTTGGTTTCCAAAT ACTTCTTTTTATGCATTTAGAGGGAACACCATCCAATGCAAAGGATATACCCAATTGGGTCATTTTTTTCCCTCTTATTT TATTGCAAGGAGCTGGGGTTTTATTTGCAGTATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACACTGGAGATATT CCTAGAAGCTACTCATCTATAGCATCTAAATCTTGTGACTGCTTCGGGTTCTTTCGTCGTGGGTCAAGGTTGCTAGGTTG GTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTATTGTGCTGGGAATTCTGGGTATAATACTTTCTCTC CTGATACGGTGAAGAAAATGCCTAGAGCAGATCTTGTTGAGGAGATTTGGAGACTTCAAGCTGCATTGGGTGAGCAGACA GAAGTTACAATATCTAGCCAGGAGGAGTATGAAAAACTTCAAAACGAGAAGATCTTATGTAGAATTTGCTTCGAAGAGCA AATTAATGTGGTCCTACTTCCCTGCAAGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCGATCT GCCGTAGCACCATTGAAGAAAAGATGCCAGTGTATGATGTGTAG 

Protein sequence (LotjaGi5g1v0268100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLVQRRVMSWRRVAKAFQALLAHALLFCFTLLLALKLDGTLLSSWWTVFFPLWLFHAVVARGRFSLPAPSMPHGRQWAPC HSIIAAPVLVAFELLLCIHLSSSYDVNLKIVFIPLIAFEVVILIDNVRMCRALMPGDDENLTDEAVWETLPHFWISISMV FFIAATVFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGSCQITEPCSSSNSIRYLDWSRGGIVVSTDE DRQQNRLCNLQDIGGHIMKIPFVGFQILLFMHLEGTPSNAKDIPNWVIFFPLILLQGAGVLFAVYRLIEKIVLLLYTGDI PRSYSSIASKSCDCFGFFRRGSRLLGWWSIDEGSREEEARLYCAGNSGYNTFSPDTVKKMPRADLVEEIWRLQAALGEQT EVTISSQEEYEKLQNEKILCRICFEEQINVVLLPCKHHILCSTCCEKCKRCPICRSTIEEKMPVYDV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 18 18 -
Phobius 1 34 34 -
PANTHER 4 467 464 2.1E-274
PANTHER 4 467 464 2.1E-274
TMHMM 13 35 23 -
Phobius 19 29 11 -
Phobius 30 34 5 -
Pfam 35 295 261 2.9E-90
Phobius 35 43 9 -
Phobius 44 62 19 -
Phobius 63 82 20 -
TMHMM 81 103 23 -
Phobius 83 101 19 -
Phobius 102 106 5 -
Phobius 107 124 18 -
TMHMM 110 129 20 -
Phobius 125 152 28 -
TMHMM 149 171 23 -
Phobius 153 173 21 -
Phobius 174 178 5 -
TMHMM 178 200 23 -
Phobius 179 200 22 -
Phobius 201 252 52 -
Phobius 253 273 21 -
Phobius 274 284 11 -
Phobius 285 305 21 -
TMHMM 286 308 23 -
Phobius 306 467 162 -
Gene3D 394 466 73 9.1E-17
SUPERFAMILY 410 463 54 9.19E-9
Pfam 419 460 42 1.4E-10
ProSiteProfiles 420 455 36 11.102

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0268100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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